Running LINCS pipeline on PSP for: LINCS_GCP_Plate70_annotated_minimized_metadataupdate_2019-12-16_17-22-40

GCP

Job Status

Created: 2019-12-16 14:28:35
Modified: 2020-06-01 16:36:20
Email: jmulla@broadinstitute.org
Status: ERROR
Info:
Description: Running LINCS pipeline on PSP for: LINCS_GCP_Plate70_annotated_minimized_metadataupdate_2019-12-16_17-22-40
File Path: /data/labkey/files/LINCS/GCP/@files/LincsPSP_LINCS_GCP_Plate70_annotated_minimized_metadataupdate_2019-12-16_17-22-40_2019-12-16_14-28-35.log
Files: LincsPSP_LINCS_GCP_Plate70_annotated_minimized_metadataupdate_2019-12-16_17-22-40_2019-12-16_14-28-35.log

Log File


16 Dec 2019 14:28:35,270 INFO : Running LINCS pipeline on PSP for: LINCS_GCP_Plate70_annotated_minimized_metadataupdate_2019-12-16_17-22-40
16 Dec 2019 14:28:35,270 INFO : =======================================
16 Dec 2019 14:28:36,211 INFO : Starting to run task 'org.labkey.lincs.psp.LincsPspTask' at location 'webserver-high-priority'
16 Dec 2019 14:28:36,212 INFO : Running LINCS PSP pipeline for LINCS_GCP_Plate70_annotated_minimized_metadataupdate_2019-12-16_17-22-40
16 Dec 2019 14:28:36,212 INFO : Submitting job for runId: 79928, name: LINCS_GCP_Plate70_annotated_minimized_metadataupdate_2019-12-16_17-22-40
16 Dec 2019 14:28:36,214 INFO : Looking for existing job with name LINCS_GCP_Plate70_annotated_minimized_metadataupdate_2019-12-16_17-22-40
16 Dec 2019 14:28:36,560 INFO : PSP job name: LINCS_GCP_Plate70_annotated_minimized_metadataupdate_2019-12-16_17-22-40
16 Dec 2019 14:28:36,560 INFO : Sending JSON:
16 Dec 2019 14:28:36,561 INFO : { "level 4": {"panorama": { "method": "PUT", "url": "https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate70_annotated_minimized_metadataupdate_2019-12-16_17-22-40_LVL4.gct" }}, "assay": "GCP", "name": "LINCS_GCP_Plate70_annotated_minimized_metadataupdate_2019-12-16_17-22-40", "config": {"panorama": { "method": "PUT", "url": "https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate70_annotated_minimized_metadataupdate_2019-12-16_17-22-40.cfg" }}, "level 2": {"panorama": { "method": "GET", "url": "https://panoramaweb.org/lincs/LINCS/GCP/runGCTReportApi.view?runId=79928&remote=true&reportName=GCT%20File%20GCP" }}, "level 3": {"panorama": { "method": "PUT", "url": "https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate70_annotated_minimized_metadataupdate_2019-12-16_17-22-40_LVL3.gct" }} }
16 Dec 2019 14:28:36,561 INFO : Sending POST request to https://api.clue.io/api/psp
16 Dec 2019 14:28:36,790 INFO : Response code - 200
16 Dec 2019 14:28:36,791 INFO : Response from server: {"name":"LINCS_GCP_Plate70_annotated_minimized_metadataupdate_2019-12-16_17-22-40","assay":"GCP","status":"Waiting_To_Download","id":"5df805145beec6001388dbfd","created":"2019-12-16T22:28:36.628Z","last_modified":"2019-12-16T22:28:36.628Z","level 2":{"panorama":{"method":"GET","url":"https://panoramaweb.org/lincs/LINCS/GCP/runGCTReportApi.view?runId=79928&remote=true&reportName=GCT%20File%20GCP"}},"level 3":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate70_annotated_minimized_metadataupdate_2019-12-16_17-22-40_LVL3.gct"}},"level 4":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate70_annotated_minimized_metadataupdate_2019-12-16_17-22-40_LVL4.gct"}},"config":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate70_annotated_minimized_metadataupdate_2019-12-16_17-22-40.cfg"}}}
16 Dec 2019 14:28:36,791 INFO : Sent POST request to https://api.clue.io/api/psp
16 Dec 2019 14:28:36,793 INFO : Checking status of job 5df805145beec6001388dbfd
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16 Dec 2019 14:59:23,522 ERROR: Exceeded 30 minute wait time.
16 Dec 2019 14:59:23,739 INFO : Finished running LINCS PSP pipeline.
16 Dec 2019 14:59:23,739 INFO : Successfully completed task 'org.labkey.lincs.psp.LincsPspTask'