Running LINCS pipeline on PSP for: LINCS_GCP_Plate72_annotated_minimized_2019-12-16_16-53-04

GCP

Job Status

Created: 2019-12-16 13:56:11
Modified: 2020-06-01 16:36:20
Email: jmulla@broadinstitute.org
Status: ERROR
Info:
Description: Running LINCS pipeline on PSP for: LINCS_GCP_Plate72_annotated_minimized_2019-12-16_16-53-04
File Path: /data/labkey/files/LINCS/GCP/@files/LincsPSP_LINCS_GCP_Plate72_annotated_minimized_2019-12-16_16-53-04_2019-12-16_13-56-10.log
Files: LincsPSP_LINCS_GCP_Plate72_annotated_minimized_2019-12-16_16-53-04_2019-12-16_13-56-10.log

Log File


16 Dec 2019 13:56:11,152 INFO : Running LINCS pipeline on PSP for: LINCS_GCP_Plate72_annotated_minimized_2019-12-16_16-53-04
16 Dec 2019 13:56:11,153 INFO : =======================================
16 Dec 2019 13:56:12,064 INFO : Starting to run task 'org.labkey.lincs.psp.LincsPspTask' at location 'webserver-high-priority'
16 Dec 2019 13:56:12,065 INFO : Running LINCS PSP pipeline for LINCS_GCP_Plate72_annotated_minimized_2019-12-16_16-53-04
16 Dec 2019 13:56:12,065 INFO : Submitting job for runId: 79926, name: LINCS_GCP_Plate72_annotated_minimized_2019-12-16_16-53-04
16 Dec 2019 13:56:12,068 INFO : Looking for existing job with name LINCS_GCP_Plate72_annotated_minimized_2019-12-16_16-53-04
16 Dec 2019 13:56:12,454 INFO : PSP job name: LINCS_GCP_Plate72_annotated_minimized_2019-12-16_16-53-04
16 Dec 2019 13:56:12,455 INFO : Sending JSON:
16 Dec 2019 13:56:12,456 INFO : { "level 4": {"panorama": { "method": "PUT", "url": "https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate72_annotated_minimized_2019-12-16_16-53-04_LVL4.gct" }}, "assay": "GCP", "name": "LINCS_GCP_Plate72_annotated_minimized_2019-12-16_16-53-04", "config": {"panorama": { "method": "PUT", "url": "https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate72_annotated_minimized_2019-12-16_16-53-04.cfg" }}, "level 2": {"panorama": { "method": "GET", "url": "https://panoramaweb.org/lincs/LINCS/GCP/runGCTReportApi.view?runId=79926&remote=true&reportName=GCT%20File%20GCP" }}, "level 3": {"panorama": { "method": "PUT", "url": "https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate72_annotated_minimized_2019-12-16_16-53-04_LVL3.gct" }} }
16 Dec 2019 13:56:12,456 INFO : Sending POST request to https://api.clue.io/api/psp
16 Dec 2019 13:56:12,666 INFO : Response code - 200
16 Dec 2019 13:56:12,667 INFO : Response from server: {"name":"LINCS_GCP_Plate72_annotated_minimized_2019-12-16_16-53-04","assay":"GCP","status":"Waiting_To_Download","id":"5df7fd7c5beec6001388dbfa","created":"2019-12-16T21:56:12.528Z","last_modified":"2019-12-16T21:56:12.528Z","level 2":{"panorama":{"method":"GET","url":"https://panoramaweb.org/lincs/LINCS/GCP/runGCTReportApi.view?runId=79926&remote=true&reportName=GCT%20File%20GCP"}},"level 3":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate72_annotated_minimized_2019-12-16_16-53-04_LVL3.gct"}},"level 4":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate72_annotated_minimized_2019-12-16_16-53-04_LVL4.gct"}},"config":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate72_annotated_minimized_2019-12-16_16-53-04.cfg"}}}
16 Dec 2019 13:56:12,668 INFO : Sent POST request to https://api.clue.io/api/psp
16 Dec 2019 13:56:12,671 INFO : Checking status of job 5df7fd7c5beec6001388dbfa
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16 Dec 2019 14:26:59,769 ERROR: Exceeded 30 minute wait time.
16 Dec 2019 14:27:00,313 INFO : Finished running LINCS PSP pipeline.
16 Dec 2019 14:27:00,313 INFO : Successfully completed task 'org.labkey.lincs.psp.LincsPspTask'