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Running LINCS pipeline on PSP for: LINCS_GCP_Plate85_annotated_minimized_2019-11-15_15-03-53

GCP

Job Status

Created: 2019-11-15 12:39:50
Modified: 2020-06-01 16:36:20
Email: karen@broadinstitute.org
Status: ERROR
Info:
Description: Running LINCS pipeline on PSP for: LINCS_GCP_Plate85_annotated_minimized_2019-11-15_15-03-53
File Path: /data/labkey/files/LINCS/GCP/@files/LincsPSP_LINCS_GCP_Plate85_annotated_minimized_2019-11-15_15-03-53_2019-11-15_12-39-50.log
Files: LincsPSP_LINCS_GCP_Plate85_annotated_minimized_2019-11-15_15-03-53_2019-11-15_12-39-50.log
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Log File


15 Nov 2019 12:39:50,547 INFO : Running LINCS pipeline on PSP for:  LINCS_GCP_Plate85_annotated_minimized_2019-11-15_15-03-53
15 Nov 2019 12:39:50,548 INFO : =======================================
15 Nov 2019 12:59:09,373 INFO : Starting to run task 'org.labkey.lincs.psp.LincsPspTask' at location 'webserver-high-priority'
15 Nov 2019 12:59:09,391 INFO : Running LINCS PSP pipeline for LINCS_GCP_Plate85_annotated_minimized_2019-11-15_15-03-53
15 Nov 2019 12:59:09,391 INFO : Submitting job for runId: 78304, name: LINCS_GCP_Plate85_annotated_minimized_2019-11-15_15-03-53
15 Nov 2019 12:59:09,394 INFO : Looking for existing job with name LINCS_GCP_Plate85_annotated_minimized_2019-11-15_15-03-53
15 Nov 2019 12:59:09,772 INFO : PSP job name: LINCS_GCP_Plate85_annotated_minimized_2019-11-15_15-03-53
15 Nov 2019 12:59:09,773 INFO : Sending JSON:
15 Nov 2019 12:59:09,773 INFO : {
  "level 4": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate85_annotated_minimized_2019-11-15_15-03-53_LVL4.gct"
  }},
  "assay": "GCP",
  "name": "LINCS_GCP_Plate85_annotated_minimized_2019-11-15_15-03-53",
  "config": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate85_annotated_minimized_2019-11-15_15-03-53.cfg"
  }},
  "level 2": {"panorama": {
    "method": "GET",
    "url": "https://panoramaweb.org/lincs/LINCS/GCP/runGCTReportApi.view?runId=78304&remote=true&reportName=GCT%20File%20GCP"
  }},
  "level 3": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate85_annotated_minimized_2019-11-15_15-03-53_LVL3.gct"
  }}
}
15 Nov 2019 12:59:09,800 INFO : Sending POST request to https://api.clue.io/api/psp
15 Nov 2019 12:59:10,026 INFO : Response code - 200
15 Nov 2019 12:59:10,027 INFO : Response from server: {"name":"LINCS_GCP_Plate85_annotated_minimized_2019-11-15_15-03-53","assay":"GCP","status":"Waiting_To_Download","id":"5dcf119d6174be0019044108","created":"2019-11-15T20:59:09.861Z","last_modified":"2019-11-15T20:59:09.861Z","level 2":{"panorama":{"method":"GET","url":"https://panoramaweb.org/lincs/LINCS/GCP/runGCTReportApi.view?runId=78304&remote=true&reportName=GCT%20File%20GCP"}},"level 3":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate85_annotated_minimized_2019-11-15_15-03-53_LVL3.gct"}},"level 4":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate85_annotated_minimized_2019-11-15_15-03-53_LVL4.gct"}},"config":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate85_annotated_minimized_2019-11-15_15-03-53.cfg"}}}
15 Nov 2019 12:59:10,028 INFO : Sent POST request to https://api.clue.io/api/psp
15 Nov 2019 12:59:10,082 INFO : Checking status of job 5dcf119d6174be0019044108
15 Nov 2019 12:59:10,225 INFO : Status: Waiting_To_Download
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15 Nov 2019 13:29:58,753 ERROR: Exceeded 30 minute wait time.
15 Nov 2019 13:29:59,989 INFO : Finished running LINCS PSP pipeline.
15 Nov 2019 13:29:59,989 INFO : Successfully completed task 'org.labkey.lincs.psp.LincsPspTask'