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Re-running LINCS pipeline on PSP for: LINCS_GCP_Plate86_annotated_minimized_2019-10-30_11-14-22

GCP

Job Status

Created: 2019-10-30 09:12:21
Modified: 2020-06-01 16:36:20
Email: vsharma@uw.edu
Status: COMPLETE
Info:
Description: Re-running LINCS pipeline on PSP for: LINCS_GCP_Plate86_annotated_minimized_2019-10-30_11-14-22
File Path: /data/labkey/files/LINCS/GCP/@files/LincsPSP_rerun_LINCS_GCP_Plate86_annotated_minimized_2019-10-30_11-14-22_2019-10-30_09-12-20.log
Files: LincsPSP_rerun_LINCS_GCP_Plate86_annotated_minimized_2019-10-30_11-14-22_2019-10-30_09-12-20.log
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Log File


30 Oct 2019 09:12:21,238 INFO : Re-running LINCS pipeline on PSP for:  LINCS_GCP_Plate86_annotated_minimized_2019-10-30_11-14-22
30 Oct 2019 09:12:21,238 INFO : =======================================
30 Oct 2019 09:12:21,581 INFO : Starting to run task 'org.labkey.lincs.psp.LincsPspTask' at location 'webserver-high-priority'
30 Oct 2019 09:12:21,582 INFO : Running LINCS PSP pipeline for LINCS_GCP_Plate86_annotated_minimized_2019-10-30_11-14-22
30 Oct 2019 09:12:21,582 INFO : Resubmitting job for runId: 77577, name: LINCS_GCP_Plate86_annotated_minimized_2019-10-30_11-14-22
30 Oct 2019 09:12:21,582 INFO : Old job details: 
30 Oct 2019 09:12:21,582 INFO : Id: 259
30 Oct 2019 09:12:21,582 INFO : Pipeline job Id: 78215
30 Oct 2019 09:12:21,582 INFO : Run Id: 77577
30 Oct 2019 09:12:21,582 INFO : PSP Job Id: 5db9a999d7148a0019928aca
30 Oct 2019 09:12:21,583 INFO : PSP Job name: LINCS_GCP_Plate86_annotated_minimized_2019-10-30_11-14-22
30 Oct 2019 09:12:21,583 INFO : PSP Job status: Waiting_To_Download
30 Oct 2019 09:12:21,583 INFO : JSON: {"level 4":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate86_annotated_minimized_2019-10-30_11-14-22_LVL4.gct"}},"assay":"GCP","created":"2019-10-30T15:17:45.219Z","name":"LINCS_GCP_Plate86_annotated_minimized_2019-10-30_11-14-22","id":"5db9a999d7148a0019928aca","last_modified":"2019-10-30T15:17:45.219Z","config":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate86_annotated_minimized_2019-10-30_11-14-22.cfg"}},"level 2":{"panorama":{"method":"GET","url":"https://panoramaweb.org/lincs/LINCS/GCP/runGCTReportApi.view?runId=77577&remote=true&reportName=GCT%20File%20GCP"}},"status":"Waiting_To_Download","level 3":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate86_annotated_minimized_2019-10-30_11-14-22_LVL3.gct"}}}
30 Oct 2019 09:12:21,583 INFO : Resubmitting...
30 Oct 2019 09:12:21,585 INFO : Looking for existing job with name LINCS_GCP_Plate86_annotated_minimized_2019-10-30_11-14-22
30 Oct 2019 09:12:21,957 INFO : Job with name LINCS_GCP_Plate86_annotated_minimized_2019-10-30_11-14-22exists.
30 Oct 2019 09:12:21,957 INFO : Looking for existing job with name LINCS_GCP_Plate86_annotated_minimized_2019-10-30_11-14-22_2
30 Oct 2019 09:12:22,064 INFO : PSP job name: LINCS_GCP_Plate86_annotated_minimized_2019-10-30_11-14-22_2
30 Oct 2019 09:12:22,064 INFO : Sending JSON:
30 Oct 2019 09:12:22,064 INFO : {
  "level 4": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate86_annotated_minimized_2019-10-30_11-14-22_LVL4.gct"
  }},
  "assay": "GCP",
  "name": "LINCS_GCP_Plate86_annotated_minimized_2019-10-30_11-14-22_2",
  "config": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate86_annotated_minimized_2019-10-30_11-14-22.cfg"
  }},
  "level 2": {"panorama": {
    "method": "GET",
    "url": "https://panoramaweb.org/lincs/LINCS/GCP/runGCTReportApi.view?runId=77577&remote=true&reportName=GCT%20File%20GCP"
  }},
  "level 3": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate86_annotated_minimized_2019-10-30_11-14-22_LVL3.gct"
  }}
}
30 Oct 2019 09:12:22,065 INFO : Sending POST request to https://api.clue.io/api/psp
30 Oct 2019 09:12:22,282 INFO : Response code - 200
30 Oct 2019 09:12:22,282 INFO : Response from server: {"name":"LINCS_GCP_Plate86_annotated_minimized_2019-10-30_11-14-22_2","assay":"GCP","status":"Waiting_To_Download","id":"5db9b666d7148a0019928aef","created":"2019-10-30T16:12:22.122Z","last_modified":"2019-10-30T16:12:22.122Z","level 2":{"panorama":{"method":"GET","url":"https://panoramaweb.org/lincs/LINCS/GCP/runGCTReportApi.view?runId=77577&remote=true&reportName=GCT%20File%20GCP"}},"level 3":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate86_annotated_minimized_2019-10-30_11-14-22_LVL3.gct"}},"level 4":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate86_annotated_minimized_2019-10-30_11-14-22_LVL4.gct"}},"config":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate86_annotated_minimized_2019-10-30_11-14-22.cfg"}}}
30 Oct 2019 09:12:22,282 INFO : Sent POST request to https://api.clue.io/api/psp
30 Oct 2019 09:12:22,284 INFO : Checking status of job 5db9b666d7148a0019928aef
30 Oct 2019 09:12:22,394 INFO : Status: Waiting_To_Download
30 Oct 2019 09:12:42,395 INFO : Checking status of job 5db9b666d7148a0019928aef
30 Oct 2019 09:12:42,656 INFO : Status: created LVL2 GCT
30 Oct 2019 09:13:02,657 INFO : Checking status of job 5db9b666d7148a0019928aef
30 Oct 2019 09:13:02,919 INFO : Status: created LVL2 GCT
30 Oct 2019 09:13:22,920 INFO : Checking status of job 5db9b666d7148a0019928aef
30 Oct 2019 09:13:23,178 INFO : Status: created LVL2 GCT
30 Oct 2019 09:13:43,178 INFO : Checking status of job 5db9b666d7148a0019928aef
30 Oct 2019 09:13:43,517 INFO : Status: created LVL2 GCT
30 Oct 2019 09:14:03,517 INFO : Checking status of job 5db9b666d7148a0019928aef
30 Oct 2019 09:14:03,785 INFO : Status: created LVL2 GCT
30 Oct 2019 09:14:23,785 INFO : Checking status of job 5db9b666d7148a0019928aef
30 Oct 2019 09:14:24,047 INFO : Status: created LVL2 GCT
30 Oct 2019 09:14:44,047 INFO : Checking status of job 5db9b666d7148a0019928aef
30 Oct 2019 09:14:44,318 INFO : Status: created LVL2 GCT
30 Oct 2019 09:15:04,319 INFO : Checking status of job 5db9b666d7148a0019928aef
30 Oct 2019 09:15:04,650 INFO : Status: created LVL2 GCT
30 Oct 2019 09:15:24,651 INFO : Checking status of job 5db9b666d7148a0019928aef
30 Oct 2019 09:15:24,909 INFO : Status: created LVL2 GCT
30 Oct 2019 09:15:44,910 INFO : Checking status of job 5db9b666d7148a0019928aef
30 Oct 2019 09:15:45,171 INFO : Status: created LVL2 GCT
30 Oct 2019 09:16:05,171 INFO : Checking status of job 5db9b666d7148a0019928aef
30 Oct 2019 09:16:05,432 INFO : Status: created LVL 3 GCT
30 Oct 2019 09:16:25,432 INFO : Checking status of job 5db9b666d7148a0019928aef
30 Oct 2019 09:16:25,764 INFO : Status: POUR : succeeded in uploading all GCTs to Panorama
30 Oct 2019 09:16:25,765 INFO : PSP job completed with status: POUR : succeeded in uploading all GCTs to Panorama
30 Oct 2019 09:16:25,765 INFO : Finished running LINCS PSP pipeline.
30 Oct 2019 09:16:25,765 INFO : Successfully completed task 'org.labkey.lincs.psp.LincsPspTask'