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Running LINCS pipeline on PSP for: LINCS_GCP_Plate65_annotated_minimized_2019-10-17_15-57-42

GCP

Job Status

Created: 2019-10-17 13:02:46
Modified: 2020-06-01 16:36:20
Email: karen@broadinstitute.org
Status: COMPLETE
Info:
Description: Running LINCS pipeline on PSP for: LINCS_GCP_Plate65_annotated_minimized_2019-10-17_15-57-42
File Path: /data/labkey/files/LINCS/GCP/@files/LincsPSP_LINCS_GCP_Plate65_annotated_minimized_2019-10-17_15-57-42_2019-10-17_13-02-45.log
Files: LincsPSP_LINCS_GCP_Plate65_annotated_minimized_2019-10-17_15-57-42_2019-10-17_13-02-45.log
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Log File


17 Oct 2019 13:02:45,945 INFO : Running LINCS pipeline on PSP for:  LINCS_GCP_Plate65_annotated_minimized_2019-10-17_15-57-42
17 Oct 2019 13:02:45,945 INFO : =======================================
17 Oct 2019 13:02:46,652 INFO : Starting to run task 'org.labkey.lincs.psp.LincsPspTask' at location 'webserver-high-priority'
17 Oct 2019 13:02:46,653 INFO : Running LINCS PSP pipeline for LINCS_GCP_Plate65_annotated_minimized_2019-10-17_15-57-42
17 Oct 2019 13:02:46,653 INFO : Submitting job for runId: 76856, name: LINCS_GCP_Plate65_annotated_minimized_2019-10-17_15-57-42
17 Oct 2019 13:02:46,654 INFO : Looking for existing job with name LINCS_GCP_Plate65_annotated_minimized_2019-10-17_15-57-42
17 Oct 2019 13:02:47,053 INFO : PSP job name: LINCS_GCP_Plate65_annotated_minimized_2019-10-17_15-57-42
17 Oct 2019 13:02:47,053 INFO : Sending JSON:
17 Oct 2019 13:02:47,053 INFO : {
  "level 4": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate65_annotated_minimized_2019-10-17_15-57-42_LVL4.gct"
  }},
  "assay": "GCP",
  "name": "LINCS_GCP_Plate65_annotated_minimized_2019-10-17_15-57-42",
  "config": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate65_annotated_minimized_2019-10-17_15-57-42.cfg"
  }},
  "level 2": {"panorama": {
    "method": "GET",
    "url": "https://panoramaweb.org/lincs/LINCS/GCP/runGCTReportApi.view?runId=76856&remote=true&reportName=GCT%20File%20GCP"
  }},
  "level 3": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate65_annotated_minimized_2019-10-17_15-57-42_LVL3.gct"
  }}
}
17 Oct 2019 13:02:47,054 INFO : Sending POST request to https://api.clue.io/api/psp
17 Oct 2019 13:02:47,248 INFO : Response code - 200
17 Oct 2019 13:02:47,248 INFO : Response from server: {"name":"LINCS_GCP_Plate65_annotated_minimized_2019-10-17_15-57-42","assay":"GCP","status":"Waiting_To_Download","id":"5da8c8e7d7148a0019927ca0","created":"2019-10-17T20:02:47.117Z","last_modified":"2019-10-17T20:02:47.117Z","level 2":{"panorama":{"method":"GET","url":"https://panoramaweb.org/lincs/LINCS/GCP/runGCTReportApi.view?runId=76856&remote=true&reportName=GCT%20File%20GCP"}},"level 3":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate65_annotated_minimized_2019-10-17_15-57-42_LVL3.gct"}},"level 4":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate65_annotated_minimized_2019-10-17_15-57-42_LVL4.gct"}},"config":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate65_annotated_minimized_2019-10-17_15-57-42.cfg"}}}
17 Oct 2019 13:02:47,248 INFO : Sent POST request to https://api.clue.io/api/psp
17 Oct 2019 13:02:47,250 INFO : Checking status of job 5da8c8e7d7148a0019927ca0
17 Oct 2019 13:02:47,352 INFO : Status: Waiting_To_Download
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17 Oct 2019 13:26:05,546 INFO : Checking status of job 5da8c8e7d7148a0019927ca0
17 Oct 2019 13:26:05,794 INFO : Status: created LVL2 GCT
17 Oct 2019 13:26:25,794 INFO : Checking status of job 5da8c8e7d7148a0019927ca0
17 Oct 2019 13:26:26,123 INFO : Status: created LVL2 GCT
17 Oct 2019 13:26:46,123 INFO : Checking status of job 5da8c8e7d7148a0019927ca0
17 Oct 2019 13:26:46,374 INFO : Status: created LVL2 GCT
17 Oct 2019 13:27:06,375 INFO : Checking status of job 5da8c8e7d7148a0019927ca0
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17 Oct 2019 13:28:47,894 INFO : Status: created LVL2 GCT
17 Oct 2019 13:29:07,895 INFO : Checking status of job 5da8c8e7d7148a0019927ca0
17 Oct 2019 13:29:08,214 INFO : Status: created LVL2 GCT
17 Oct 2019 13:29:28,214 INFO : Checking status of job 5da8c8e7d7148a0019927ca0
17 Oct 2019 13:29:28,462 INFO : Status: created LVL 3 GCT
17 Oct 2019 13:29:48,462 INFO : Checking status of job 5da8c8e7d7148a0019927ca0
17 Oct 2019 13:29:48,706 INFO : Status: POUR : succeeded in uploading all GCTs to Panorama
17 Oct 2019 13:29:48,706 INFO : PSP job completed with status: POUR : succeeded in uploading all GCTs to Panorama
17 Oct 2019 13:29:48,707 INFO : Finished running LINCS PSP pipeline.
17 Oct 2019 13:29:48,707 INFO : Successfully completed task 'org.labkey.lincs.psp.LincsPspTask'