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Running LINCS pipeline on PSP for: LINCS_GCP_Plate87_annotated_minimized_2019-10-16_17-59-07

GCP

Job Status

Created: 2019-10-16 15:04:25
Modified: 2020-06-01 16:36:20
Email: karen@broadinstitute.org
Status: COMPLETE
Info:
Description: Running LINCS pipeline on PSP for: LINCS_GCP_Plate87_annotated_minimized_2019-10-16_17-59-07
File Path: /data/labkey/files/LINCS/GCP/@files/LincsPSP_LINCS_GCP_Plate87_annotated_minimized_2019-10-16_17-59-07_2019-10-16_15-04-24.log
Files: LincsPSP_LINCS_GCP_Plate87_annotated_minimized_2019-10-16_17-59-07_2019-10-16_15-04-24.log
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Log File


16 Oct 2019 15:04:25,032 INFO : Running LINCS pipeline on PSP for:  LINCS_GCP_Plate87_annotated_minimized_2019-10-16_17-59-07
16 Oct 2019 15:04:25,032 INFO : =======================================
16 Oct 2019 15:04:41,125 INFO : Starting to run task 'org.labkey.lincs.psp.LincsPspTask' at location 'webserver-high-priority'
16 Oct 2019 15:04:41,125 INFO : Running LINCS PSP pipeline for LINCS_GCP_Plate87_annotated_minimized_2019-10-16_17-59-07
16 Oct 2019 15:04:41,126 INFO : Submitting job for runId: 76798, name: LINCS_GCP_Plate87_annotated_minimized_2019-10-16_17-59-07
16 Oct 2019 15:04:41,131 INFO : Looking for existing job with name LINCS_GCP_Plate87_annotated_minimized_2019-10-16_17-59-07
16 Oct 2019 15:04:41,390 INFO : PSP job name: LINCS_GCP_Plate87_annotated_minimized_2019-10-16_17-59-07
16 Oct 2019 15:04:41,391 INFO : Sending JSON:
16 Oct 2019 15:04:41,392 INFO : {
  "level 4": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate87_annotated_minimized_2019-10-16_17-59-07_LVL4.gct"
  }},
  "assay": "GCP",
  "name": "LINCS_GCP_Plate87_annotated_minimized_2019-10-16_17-59-07",
  "config": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate87_annotated_minimized_2019-10-16_17-59-07.cfg"
  }},
  "level 2": {"panorama": {
    "method": "GET",
    "url": "https://panoramaweb.org/lincs/LINCS/GCP/runGCTReportApi.view?runId=76798&remote=true&reportName=GCT%20File%20GCP"
  }},
  "level 3": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate87_annotated_minimized_2019-10-16_17-59-07_LVL3.gct"
  }}
}
16 Oct 2019 15:04:41,392 INFO : Sending POST request to https://api.clue.io/api/psp
16 Oct 2019 15:04:41,604 INFO : Response code - 200
16 Oct 2019 15:04:41,605 INFO : Response from server: {"name":"LINCS_GCP_Plate87_annotated_minimized_2019-10-16_17-59-07","assay":"GCP","status":"Waiting_To_Download","id":"5da793f9d7148a0019927b9c","created":"2019-10-16T22:04:41.455Z","last_modified":"2019-10-16T22:04:41.455Z","level 2":{"panorama":{"method":"GET","url":"https://panoramaweb.org/lincs/LINCS/GCP/runGCTReportApi.view?runId=76798&remote=true&reportName=GCT%20File%20GCP"}},"level 3":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate87_annotated_minimized_2019-10-16_17-59-07_LVL3.gct"}},"level 4":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate87_annotated_minimized_2019-10-16_17-59-07_LVL4.gct"}},"config":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate87_annotated_minimized_2019-10-16_17-59-07.cfg"}}}
16 Oct 2019 15:04:41,606 INFO : Sent POST request to https://api.clue.io/api/psp
16 Oct 2019 15:04:41,608 INFO : Checking status of job 5da793f9d7148a0019927b9c
16 Oct 2019 15:04:41,714 INFO : Status: Waiting_To_Download
16 Oct 2019 15:05:01,715 INFO : Checking status of job 5da793f9d7148a0019927b9c
16 Oct 2019 15:05:01,975 INFO : Status: Waiting_To_Download
16 Oct 2019 15:05:21,975 INFO : Checking status of job 5da793f9d7148a0019927b9c
16 Oct 2019 15:05:22,224 INFO : Status: Waiting_To_Download
16 Oct 2019 15:05:42,224 INFO : Checking status of job 5da793f9d7148a0019927b9c
16 Oct 2019 15:05:42,476 INFO : Status: Waiting_To_Download
16 Oct 2019 15:06:02,477 INFO : Checking status of job 5da793f9d7148a0019927b9c
16 Oct 2019 15:06:02,802 INFO : Status: Waiting_To_Download
16 Oct 2019 15:06:22,803 INFO : Checking status of job 5da793f9d7148a0019927b9c
16 Oct 2019 15:06:23,052 INFO : Status: created LVL2 GCT
16 Oct 2019 15:06:43,053 INFO : Checking status of job 5da793f9d7148a0019927b9c
16 Oct 2019 15:06:43,307 INFO : Status: created LVL2 GCT
16 Oct 2019 15:07:03,308 INFO : Checking status of job 5da793f9d7148a0019927b9c
16 Oct 2019 15:07:03,561 INFO : Status: created LVL2 GCT
16 Oct 2019 15:07:23,562 INFO : Checking status of job 5da793f9d7148a0019927b9c
16 Oct 2019 15:07:23,895 INFO : Status: created LVL2 GCT
16 Oct 2019 15:07:43,896 INFO : Checking status of job 5da793f9d7148a0019927b9c
16 Oct 2019 15:07:44,147 INFO : Status: created LVL2 GCT
16 Oct 2019 15:08:04,147 INFO : Checking status of job 5da793f9d7148a0019927b9c
16 Oct 2019 15:08:04,401 INFO : Status: created LVL2 GCT
16 Oct 2019 15:08:24,402 INFO : Checking status of job 5da793f9d7148a0019927b9c
16 Oct 2019 15:08:24,653 INFO : Status: created LVL2 GCT
16 Oct 2019 15:08:44,654 INFO : Checking status of job 5da793f9d7148a0019927b9c
16 Oct 2019 15:08:44,988 INFO : Status: created LVL2 GCT
16 Oct 2019 15:09:04,988 INFO : Checking status of job 5da793f9d7148a0019927b9c
16 Oct 2019 15:09:05,241 INFO : Status: created LVL2 GCT
16 Oct 2019 15:09:25,242 INFO : Checking status of job 5da793f9d7148a0019927b9c
16 Oct 2019 15:09:25,497 INFO : Status: created LVL2 GCT
16 Oct 2019 15:09:45,498 INFO : Checking status of job 5da793f9d7148a0019927b9c
16 Oct 2019 15:09:45,753 INFO : Status: created LVL2 GCT
16 Oct 2019 15:10:05,753 INFO : Checking status of job 5da793f9d7148a0019927b9c
16 Oct 2019 15:10:06,144 INFO : Status: created LVL 4 GCT
16 Oct 2019 15:10:26,145 INFO : Checking status of job 5da793f9d7148a0019927b9c
16 Oct 2019 15:10:26,396 INFO : Status: POUR : succeeded in uploading all GCTs to Panorama
16 Oct 2019 15:10:26,396 INFO : PSP job completed with status: POUR : succeeded in uploading all GCTs to Panorama
16 Oct 2019 15:10:26,396 INFO : Finished running LINCS PSP pipeline.
16 Oct 2019 15:10:26,397 INFO : Successfully completed task 'org.labkey.lincs.psp.LincsPspTask'