• Sign In
  1. Pipeline Jobs

Running LINCS pipeline on PSP for: LINCS_GCP_Plate84_annotated_minimized_2019-10-16_15-41-56

GCP

Job Status

Created: 2019-10-16 13:13:20
Modified: 2020-06-01 16:36:20
Email: karen@broadinstitute.org
Status: COMPLETE
Info:
Description: Running LINCS pipeline on PSP for: LINCS_GCP_Plate84_annotated_minimized_2019-10-16_15-41-56
File Path: /data/labkey/files/LINCS/GCP/@files/LincsPSP_LINCS_GCP_Plate84_annotated_minimized_2019-10-16_15-41-56_2019-10-16_13-13-19.log
Files: LincsPSP_LINCS_GCP_Plate84_annotated_minimized_2019-10-16_15-41-56_2019-10-16_13-13-19.log
Show Grid Browse Files

Log File


16 Oct 2019 13:13:19,928 INFO : Running LINCS pipeline on PSP for:  LINCS_GCP_Plate84_annotated_minimized_2019-10-16_15-41-56
16 Oct 2019 13:13:19,928 INFO : =======================================
16 Oct 2019 13:25:27,559 INFO : Starting to run task 'org.labkey.lincs.psp.LincsPspTask' at location 'webserver-high-priority'
16 Oct 2019 13:25:27,568 INFO : Running LINCS PSP pipeline for LINCS_GCP_Plate84_annotated_minimized_2019-10-16_15-41-56
16 Oct 2019 13:25:27,569 INFO : Submitting job for runId: 76782, name: LINCS_GCP_Plate84_annotated_minimized_2019-10-16_15-41-56
16 Oct 2019 13:25:27,571 INFO : Looking for existing job with name LINCS_GCP_Plate84_annotated_minimized_2019-10-16_15-41-56
16 Oct 2019 13:25:27,911 INFO : PSP job name: LINCS_GCP_Plate84_annotated_minimized_2019-10-16_15-41-56
16 Oct 2019 13:25:27,912 INFO : Sending JSON:
16 Oct 2019 13:25:27,912 INFO : {
  "level 4": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate84_annotated_minimized_2019-10-16_15-41-56_LVL4.gct"
  }},
  "assay": "GCP",
  "name": "LINCS_GCP_Plate84_annotated_minimized_2019-10-16_15-41-56",
  "config": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate84_annotated_minimized_2019-10-16_15-41-56.cfg"
  }},
  "level 2": {"panorama": {
    "method": "GET",
    "url": "https://panoramaweb.org/lincs/LINCS/GCP/runGCTReportApi.view?runId=76782&remote=true&reportName=GCT%20File%20GCP"
  }},
  "level 3": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate84_annotated_minimized_2019-10-16_15-41-56_LVL3.gct"
  }}
}
16 Oct 2019 13:25:27,913 INFO : Sending POST request to https://api.clue.io/api/psp
16 Oct 2019 13:25:28,134 INFO : Response code - 200
16 Oct 2019 13:25:28,134 INFO : Response from server: {"name":"LINCS_GCP_Plate84_annotated_minimized_2019-10-16_15-41-56","assay":"GCP","status":"Waiting_To_Download","id":"5da77cb7d7148a0019927b87","created":"2019-10-16T20:25:27.976Z","last_modified":"2019-10-16T20:25:27.976Z","level 2":{"panorama":{"method":"GET","url":"https://panoramaweb.org/lincs/LINCS/GCP/runGCTReportApi.view?runId=76782&remote=true&reportName=GCT%20File%20GCP"}},"level 3":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate84_annotated_minimized_2019-10-16_15-41-56_LVL3.gct"}},"level 4":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate84_annotated_minimized_2019-10-16_15-41-56_LVL4.gct"}},"config":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate84_annotated_minimized_2019-10-16_15-41-56.cfg"}}}
16 Oct 2019 13:25:28,135 INFO : Sent POST request to https://api.clue.io/api/psp
16 Oct 2019 13:25:28,153 INFO : Checking status of job 5da77cb7d7148a0019927b87
16 Oct 2019 13:25:28,275 INFO : Status: Waiting_To_Download
16 Oct 2019 13:25:48,276 INFO : Checking status of job 5da77cb7d7148a0019927b87
16 Oct 2019 13:25:48,527 INFO : Status: Waiting_To_Download
16 Oct 2019 13:26:08,527 INFO : Checking status of job 5da77cb7d7148a0019927b87
16 Oct 2019 13:26:08,781 INFO : Status: Waiting_To_Download
16 Oct 2019 13:26:28,781 INFO : Checking status of job 5da77cb7d7148a0019927b87
16 Oct 2019 13:26:29,030 INFO : Status: Waiting_To_Download
16 Oct 2019 13:26:49,030 INFO : Checking status of job 5da77cb7d7148a0019927b87
16 Oct 2019 13:26:49,360 INFO : Status: Waiting_To_Download
16 Oct 2019 13:27:09,361 INFO : Checking status of job 5da77cb7d7148a0019927b87
16 Oct 2019 13:27:09,612 INFO : Status: Waiting_To_Download
16 Oct 2019 13:27:29,613 INFO : Checking status of job 5da77cb7d7148a0019927b87
16 Oct 2019 13:27:29,866 INFO : Status: Waiting_To_Download
16 Oct 2019 13:27:49,867 INFO : Checking status of job 5da77cb7d7148a0019927b87
16 Oct 2019 13:27:50,623 INFO : Status: Waiting_To_Download
16 Oct 2019 13:28:10,624 INFO : Checking status of job 5da77cb7d7148a0019927b87
16 Oct 2019 13:28:10,959 INFO : Status: Waiting_To_Download
16 Oct 2019 13:28:30,959 INFO : Checking status of job 5da77cb7d7148a0019927b87
16 Oct 2019 13:28:31,212 INFO : Status: Waiting_To_Download
16 Oct 2019 13:28:51,213 INFO : Checking status of job 5da77cb7d7148a0019927b87
16 Oct 2019 13:28:51,469 INFO : Status: Waiting_To_Download
16 Oct 2019 13:29:11,469 INFO : Checking status of job 5da77cb7d7148a0019927b87
16 Oct 2019 13:29:11,720 INFO : Status: Waiting_To_Download
16 Oct 2019 13:29:31,720 INFO : Checking status of job 5da77cb7d7148a0019927b87
16 Oct 2019 13:29:32,044 INFO : Status: Waiting_To_Download
16 Oct 2019 13:29:52,045 INFO : Checking status of job 5da77cb7d7148a0019927b87
16 Oct 2019 13:29:52,299 INFO : Status: Waiting_To_Download
16 Oct 2019 13:30:12,299 INFO : Checking status of job 5da77cb7d7148a0019927b87
16 Oct 2019 13:30:12,553 INFO : Status: Waiting_To_Download
16 Oct 2019 13:30:32,554 INFO : Checking status of job 5da77cb7d7148a0019927b87
16 Oct 2019 13:30:32,807 INFO : Status: Waiting_To_Download
16 Oct 2019 13:30:52,808 INFO : Checking status of job 5da77cb7d7148a0019927b87
16 Oct 2019 13:30:53,140 INFO : Status: Waiting_To_Download
16 Oct 2019 13:31:13,140 INFO : Checking status of job 5da77cb7d7148a0019927b87
16 Oct 2019 13:31:13,393 INFO : Status: Waiting_To_Download
16 Oct 2019 13:31:33,394 INFO : Checking status of job 5da77cb7d7148a0019927b87
16 Oct 2019 13:31:33,648 INFO : Status: Waiting_To_Download
16 Oct 2019 13:31:53,649 INFO : Checking status of job 5da77cb7d7148a0019927b87
16 Oct 2019 13:31:53,900 INFO : Status: Waiting_To_Download
16 Oct 2019 13:32:13,901 INFO : Checking status of job 5da77cb7d7148a0019927b87
16 Oct 2019 13:32:14,232 INFO : Status: created LVL2 GCT
16 Oct 2019 13:32:34,233 INFO : Checking status of job 5da77cb7d7148a0019927b87
16 Oct 2019 13:32:34,484 INFO : Status: created LVL2 GCT
16 Oct 2019 13:32:54,485 INFO : Checking status of job 5da77cb7d7148a0019927b87
16 Oct 2019 13:32:54,826 INFO : Status: created LVL2 GCT
16 Oct 2019 13:33:14,827 INFO : Checking status of job 5da77cb7d7148a0019927b87
16 Oct 2019 13:33:15,082 INFO : Status: created LVL2 GCT
16 Oct 2019 13:33:35,083 INFO : Checking status of job 5da77cb7d7148a0019927b87
16 Oct 2019 13:33:35,335 INFO : Status: created LVL2 GCT
16 Oct 2019 13:33:55,336 INFO : Checking status of job 5da77cb7d7148a0019927b87
16 Oct 2019 13:33:55,587 INFO : Status: created LVL2 GCT
16 Oct 2019 13:34:15,587 INFO : Checking status of job 5da77cb7d7148a0019927b87
16 Oct 2019 13:34:15,922 INFO : Status: created LVL2 GCT
16 Oct 2019 13:34:35,923 INFO : Checking status of job 5da77cb7d7148a0019927b87
16 Oct 2019 13:34:36,178 INFO : Status: created LVL2 GCT
16 Oct 2019 13:34:56,178 INFO : Checking status of job 5da77cb7d7148a0019927b87
16 Oct 2019 13:34:56,429 INFO : Status: created LVL2 GCT
16 Oct 2019 13:35:16,429 INFO : Checking status of job 5da77cb7d7148a0019927b87
16 Oct 2019 13:35:16,685 INFO : Status: created LVL2 GCT
16 Oct 2019 13:35:36,685 INFO : Checking status of job 5da77cb7d7148a0019927b87
16 Oct 2019 13:35:37,020 INFO : Status: created LVL2 GCT
16 Oct 2019 13:35:57,021 INFO : Checking status of job 5da77cb7d7148a0019927b87
16 Oct 2019 13:35:57,271 INFO : Status: created LVL2 GCT
16 Oct 2019 13:36:17,272 INFO : Checking status of job 5da77cb7d7148a0019927b87
16 Oct 2019 13:36:17,522 INFO : Status: created LVL2 GCT
16 Oct 2019 13:36:37,523 INFO : Checking status of job 5da77cb7d7148a0019927b87
16 Oct 2019 13:36:37,775 INFO : Status: created LVL2 GCT
16 Oct 2019 13:36:57,776 INFO : Checking status of job 5da77cb7d7148a0019927b87
16 Oct 2019 13:36:58,107 INFO : Status: created LVL2 GCT
16 Oct 2019 13:37:18,108 INFO : Checking status of job 5da77cb7d7148a0019927b87
16 Oct 2019 13:37:18,361 INFO : Status: created LVL2 GCT
16 Oct 2019 13:37:38,361 INFO : Checking status of job 5da77cb7d7148a0019927b87
16 Oct 2019 13:37:38,615 INFO : Status: created LVL2 GCT
16 Oct 2019 13:37:58,616 INFO : Checking status of job 5da77cb7d7148a0019927b87
16 Oct 2019 13:37:58,870 INFO : Status: created LVL2 GCT
16 Oct 2019 13:38:18,871 INFO : Checking status of job 5da77cb7d7148a0019927b87
16 Oct 2019 13:38:19,127 INFO : Status: created LVL2 GCT
16 Oct 2019 13:38:39,128 INFO : Checking status of job 5da77cb7d7148a0019927b87
16 Oct 2019 13:38:39,381 INFO : Status: created LVL2 GCT
16 Oct 2019 13:38:59,382 INFO : Checking status of job 5da77cb7d7148a0019927b87
16 Oct 2019 13:38:59,705 INFO : Status: created LVL2 GCT
16 Oct 2019 13:39:19,706 INFO : Checking status of job 5da77cb7d7148a0019927b87
16 Oct 2019 13:39:19,961 INFO : Status: created LVL2 GCT
16 Oct 2019 13:39:39,961 INFO : Checking status of job 5da77cb7d7148a0019927b87
16 Oct 2019 13:39:40,217 INFO : Status: created LVL2 GCT
16 Oct 2019 13:40:00,217 INFO : Checking status of job 5da77cb7d7148a0019927b87
16 Oct 2019 13:40:00,474 INFO : Status: created LVL2 GCT
16 Oct 2019 13:40:20,475 INFO : Checking status of job 5da77cb7d7148a0019927b87
16 Oct 2019 13:40:20,815 INFO : Status: created LVL2 GCT
16 Oct 2019 13:40:40,815 INFO : Checking status of job 5da77cb7d7148a0019927b87
16 Oct 2019 13:40:41,071 INFO : Status: created LVL2 GCT
16 Oct 2019 13:41:01,072 INFO : Checking status of job 5da77cb7d7148a0019927b87
16 Oct 2019 13:41:01,327 INFO : Status: created LVL2 GCT
16 Oct 2019 13:41:21,328 INFO : Checking status of job 5da77cb7d7148a0019927b87
16 Oct 2019 13:41:21,579 INFO : Status: created LVL2 GCT
16 Oct 2019 13:41:41,579 INFO : Checking status of job 5da77cb7d7148a0019927b87
16 Oct 2019 13:41:41,913 INFO : Status: created LVL2 GCT
16 Oct 2019 13:42:01,914 INFO : Checking status of job 5da77cb7d7148a0019927b87
16 Oct 2019 13:42:02,191 INFO : Status: created LVL 3 GCT
16 Oct 2019 13:42:22,191 INFO : Checking status of job 5da77cb7d7148a0019927b87
16 Oct 2019 13:42:22,444 INFO : Status: POUR : succeeded in uploading all GCTs to Panorama
16 Oct 2019 13:42:22,444 INFO : PSP job completed with status: POUR : succeeded in uploading all GCTs to Panorama
16 Oct 2019 13:42:22,445 INFO : Finished running LINCS PSP pipeline.
16 Oct 2019 13:42:22,445 INFO : Successfully completed task 'org.labkey.lincs.psp.LincsPspTask'