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Running LINCS pipeline on PSP for: LINCS_GCP_Plate87_annotated_minimized_2019-10-15_17-19-45

GCP

Job Status

Created: 2019-10-15 14:23:01
Modified: 2020-06-01 16:36:20
Email: karen@broadinstitute.org
Status: ERROR
Info:
Description: Running LINCS pipeline on PSP for: LINCS_GCP_Plate87_annotated_minimized_2019-10-15_17-19-45
File Path: /data/labkey/files/LINCS/GCP/@files/LincsPSP_LINCS_GCP_Plate87_annotated_minimized_2019-10-15_17-19-45_2019-10-15_14-23.log
Files: LincsPSP_LINCS_GCP_Plate87_annotated_minimized_2019-10-15_17-19-45_2019-10-15_14-23.log
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Log File


15 Oct 2019 14:23:01,097 INFO : Running LINCS pipeline on PSP for:  LINCS_GCP_Plate87_annotated_minimized_2019-10-15_17-19-45
15 Oct 2019 14:23:01,097 INFO : =======================================
15 Oct 2019 14:23:02,831 INFO : Starting to run task 'org.labkey.lincs.psp.LincsPspTask' at location 'webserver-high-priority'
15 Oct 2019 14:23:02,831 INFO : Running LINCS PSP pipeline for LINCS_GCP_Plate87_annotated_minimized_2019-10-15_17-19-45
15 Oct 2019 14:23:02,831 INFO : Submitting job for runId: 76696, name: LINCS_GCP_Plate87_annotated_minimized_2019-10-15_17-19-45
15 Oct 2019 14:23:02,832 INFO : Looking for existing job with name LINCS_GCP_Plate87_annotated_minimized_2019-10-15_17-19-45
15 Oct 2019 14:23:03,174 INFO : PSP job name: LINCS_GCP_Plate87_annotated_minimized_2019-10-15_17-19-45
15 Oct 2019 14:23:03,174 INFO : Sending JSON:
15 Oct 2019 14:23:03,174 INFO : {
  "level 4": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate87_annotated_minimized_2019-10-15_17-19-45_LVL4.gct"
  }},
  "assay": "GCP",
  "name": "LINCS_GCP_Plate87_annotated_minimized_2019-10-15_17-19-45",
  "config": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate87_annotated_minimized_2019-10-15_17-19-45.cfg"
  }},
  "level 2": {"panorama": {
    "method": "GET",
    "url": "https://panoramaweb.org/lincs/LINCS/GCP/runGCTReportApi.view?runId=76696&remote=true&reportName=GCT%20File%20GCP"
  }},
  "level 3": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate87_annotated_minimized_2019-10-15_17-19-45_LVL3.gct"
  }}
}
15 Oct 2019 14:23:03,175 INFO : Sending POST request to https://api.clue.io/api/psp
15 Oct 2019 14:23:03,398 INFO : Response code - 200
15 Oct 2019 14:23:03,399 INFO : Response from server: {"name":"LINCS_GCP_Plate87_annotated_minimized_2019-10-15_17-19-45","assay":"GCP","status":"Waiting_To_Download","id":"5da638b7d7148a00199279e0","created":"2019-10-15T21:23:03.237Z","last_modified":"2019-10-15T21:23:03.237Z","level 2":{"panorama":{"method":"GET","url":"https://panoramaweb.org/lincs/LINCS/GCP/runGCTReportApi.view?runId=76696&remote=true&reportName=GCT%20File%20GCP"}},"level 3":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate87_annotated_minimized_2019-10-15_17-19-45_LVL3.gct"}},"level 4":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate87_annotated_minimized_2019-10-15_17-19-45_LVL4.gct"}},"config":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate87_annotated_minimized_2019-10-15_17-19-45.cfg"}}}
15 Oct 2019 14:23:03,399 INFO : Sent POST request to https://api.clue.io/api/psp
15 Oct 2019 14:23:03,402 INFO : Checking status of job 5da638b7d7148a00199279e0
15 Oct 2019 14:23:03,508 INFO : Status: Waiting_To_Download
15 Oct 2019 14:23:23,509 INFO : Checking status of job 5da638b7d7148a00199279e0
15 Oct 2019 14:23:23,761 INFO : Status: Waiting_To_Download
15 Oct 2019 14:23:43,762 INFO : Checking status of job 5da638b7d7148a00199279e0
15 Oct 2019 14:23:44,012 INFO : Status: created LVL2 GCT
15 Oct 2019 14:24:04,012 INFO : Checking status of job 5da638b7d7148a00199279e0
15 Oct 2019 14:24:04,264 INFO : Status: created LVL2 GCT
15 Oct 2019 14:24:24,265 INFO : Checking status of job 5da638b7d7148a00199279e0
15 Oct 2019 14:24:24,594 INFO : Status: created LVL2 GCT
15 Oct 2019 14:24:44,595 INFO : Checking status of job 5da638b7d7148a00199279e0
15 Oct 2019 14:24:44,844 INFO : Status: created LVL2 GCT
15 Oct 2019 14:25:04,845 INFO : Checking status of job 5da638b7d7148a00199279e0
15 Oct 2019 14:25:05,093 INFO : Status: created LVL2 GCT
15 Oct 2019 14:25:25,094 INFO : Checking status of job 5da638b7d7148a00199279e0
15 Oct 2019 14:25:25,355 INFO : Status: created LVL2 GCT
15 Oct 2019 14:25:45,356 INFO : Checking status of job 5da638b7d7148a00199279e0
15 Oct 2019 14:25:45,682 INFO : Status: created LVL2 GCT
15 Oct 2019 14:26:05,683 INFO : Checking status of job 5da638b7d7148a00199279e0
15 Oct 2019 14:26:05,932 INFO : Status: created LVL2 GCT
15 Oct 2019 14:26:25,933 INFO : Checking status of job 5da638b7d7148a00199279e0
15 Oct 2019 14:26:26,181 INFO : Status: created LVL2 GCT
15 Oct 2019 14:26:46,182 INFO : Checking status of job 5da638b7d7148a00199279e0
15 Oct 2019 14:26:46,438 INFO : Status: created LVL2 GCT
15 Oct 2019 14:27:06,438 INFO : Checking status of job 5da638b7d7148a00199279e0
15 Oct 2019 14:27:06,686 INFO : Status: created LVL2 GCT
15 Oct 2019 14:27:26,687 INFO : Checking status of job 5da638b7d7148a00199279e0
15 Oct 2019 14:27:26,941 INFO : Status: created LVL2 GCT
15 Oct 2019 14:27:26,942 ERROR: Error in PSP job. Error: level 3: dry error: All samples were filtered out. Try reducing the threshold.
15 Oct 2019 14:27:27,669 INFO : Finished running LINCS PSP pipeline.
15 Oct 2019 14:27:27,670 INFO : Successfully completed task 'org.labkey.lincs.psp.LincsPspTask'