Re-running LINCS pipeline on PSP for: LINCS_GCP_Plate82_annotated_minimized_2019-09-23

Re-running LINCS pipeline on PSP for: LINCS_GCP_Plate82_annotated_minimized_2019-09-23_11-24-24

GCP

Job Status

Created:

2019-10-01 08:48:39

Modified:

2020-06-01 16:36:20

Email:

vsharma@uw.edu

Status:

COMPLETE

Info:

Description:

Re-running LINCS pipeline on PSP for: LINCS_GCP_Plate82_annotated_minimized_2019-09-23_11-24-24

File Path:

/data/labkey/files/LINCS/GCP/@files/LincsPSP_rerun_LINCS_GCP_Plate82_annotated_minimized_2019-09-23_11-24-24_2019-10-01_08-48-38.log

Files:

LincsPSP_rerun_LINCS_GCP_Plate82_annotated_minimized_2019-09-23_11-24-24_2019-10-01_08-48-38.log

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Split jobs:

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Log File

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01 Oct 2019 08:48:39,035 INFO : Re-running LINCS pipeline on PSP for:  LINCS_GCP_Plate82_annotated_minimized_2019-09-23_11-24-24

01 Oct 2019 08:48:39,035 INFO : =======================================

01 Oct 2019 08:48:39,454 INFO : Starting to run task 'org.labkey.lincs.psp.LincsPspTask' at location 'webserver-high-priority'

01 Oct 2019 08:48:39,454 INFO : Running LINCS PSP pipeline for LINCS_GCP_Plate82_annotated_minimized_2019-09-23_11-24-24

01 Oct 2019 08:48:39,455 INFO : Resubmitting job for runId: 75542, name: LINCS_GCP_Plate82_annotated_minimized_2019-09-23_11-24-24

01 Oct 2019 08:48:39,455 INFO : Old job details:

01 Oct 2019 08:48:39,455 INFO : Id: 229

01 Oct 2019 08:48:39,456 INFO : Pipeline job Id: 76551

01 Oct 2019 08:48:39,456 INFO : Run Id: 75542

01 Oct 2019 08:48:39,456 INFO : PSP Job Id: 5d924685d7148a0019926913

01 Oct 2019 08:48:39,457 INFO : PSP Job name: LINCS_GCP_Plate82_annotated_minimized_2019-09-23_11-24-24

01 Oct 2019 08:48:39,457 INFO : PSP Job status: created LVL2 GCT

01 Oct 2019 08:48:39,458 INFO : JSON: {"level 4":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate82_annotated_minimized_2019-09-23_11-24-24_LVL4.gct"}},"assay":"GCP","created":"2019-09-30T18:16:37.615Z","name":"LINCS_GCP_Plate82_annotated_minimized_2019-09-23_11-24-24","id":"5d924685d7148a0019926913","last_modified":"2019-09-30T18:16:43.440Z","config":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate82_annotated_minimized_2019-09-23_11-24-24.cfg"}},"level 2":{"s3":{"url":"s3://proteomics.clue.io/psp/level2/LINCS_GCP_Plate82_annotated_minimized_2019-09-23_11-24-24_LVL2.gct"},"panorama":{"method":"GET","url":"https://panoramaweb.org/lincs/LINCS/GCP/runGCTReportApi.view?runId=75542&remote=true&reportName=GCT%20File%20GCP"}},"status":"created LVL2 GCT","level 3":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate82_annotated_minimized_2019-09-23_11-24-24_LVL3.gct"}}}

01 Oct 2019 08:48:39,458 INFO : Resubmitting...

01 Oct 2019 08:48:39,461 INFO : Looking for existing job with name LINCS_GCP_Plate82_annotated_minimized_2019-09-23_11-24-24

01 Oct 2019 08:48:39,716 INFO : Job with name LINCS_GCP_Plate82_annotated_minimized_2019-09-23_11-24-24exists.

01 Oct 2019 08:48:39,717 INFO : Looking for existing job with name LINCS_GCP_Plate82_annotated_minimized_2019-09-23_11-24-24_2

01 Oct 2019 08:48:39,822 INFO : PSP job name: LINCS_GCP_Plate82_annotated_minimized_2019-09-23_11-24-24_2

01 Oct 2019 08:48:39,823 INFO : Sending JSON:

01 Oct 2019 08:48:39,823 INFO : {
  "level 4": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate82_annotated_minimized_2019-09-23_11-24-24_LVL4.gct"
  }},
  "assay": "GCP",
  "name": "LINCS_GCP_Plate82_annotated_minimized_2019-09-23_11-24-24_2",
  "config": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate82_annotated_minimized_2019-09-23_11-24-24.cfg"
  }},
  "level 2": {"panorama": {
    "method": "GET",
    "url": "https://panoramaweb.org/lincs/LINCS/GCP/runGCTReportApi.view?runId=75542&remote=true&reportName=GCT%20File%20GCP"
  }},
  "level 3": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate82_annotated_minimized_2019-09-23_11-24-24_LVL3.gct"
  }}
}

01 Oct 2019 08:48:39,824 INFO : Sending POST request to https://api.clue.io/api/psp

01 Oct 2019 08:48:40,077 INFO : Response code - 200

01 Oct 2019 08:48:40,078 INFO : Response from server: {"name":"LINCS_GCP_Plate82_annotated_minimized_2019-09-23_11-24-24_2","assay":"GCP","status":"Waiting_To_Download","id":"5d937557d7148a0019926a04","created":"2019-10-01T15:48:39.887Z","last_modified":"2019-10-01T15:48:39.887Z","level 2":{"panorama":{"method":"GET","url":"https://panoramaweb.org/lincs/LINCS/GCP/runGCTReportApi.view?runId=75542&remote=true&reportName=GCT%20File%20GCP"}},"level 3":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate82_annotated_minimized_2019-09-23_11-24-24_LVL3.gct"}},"level 4":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate82_annotated_minimized_2019-09-23_11-24-24_LVL4.gct"}},"config":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate82_annotated_minimized_2019-09-23_11-24-24.cfg"}}}

01 Oct 2019 08:48:40,078 INFO : Sent POST request to https://api.clue.io/api/psp

01 Oct 2019 08:48:40,081 INFO : Checking status of job 5d937557d7148a0019926a04

01 Oct 2019 08:48:40,193 INFO : Status: Waiting_To_Download

01 Oct 2019 08:49:00,194 INFO : Checking status of job 5d937557d7148a0019926a04

01 Oct 2019 08:49:00,452 INFO : Status: created LVL2 GCT

01 Oct 2019 08:49:20,453 INFO : Checking status of job 5d937557d7148a0019926a04

01 Oct 2019 08:49:20,707 INFO : Status: created LVL2 GCT

01 Oct 2019 08:49:40,707 INFO : Checking status of job 5d937557d7148a0019926a04

01 Oct 2019 08:49:40,959 INFO : Status: created LVL2 GCT

01 Oct 2019 08:50:00,960 INFO : Checking status of job 5d937557d7148a0019926a04

01 Oct 2019 08:50:01,301 INFO : Status: created LVL2 GCT

01 Oct 2019 08:50:21,302 INFO : Checking status of job 5d937557d7148a0019926a04

01 Oct 2019 08:50:21,556 INFO : Status: created LVL2 GCT

01 Oct 2019 08:50:41,556 INFO : Checking status of job 5d937557d7148a0019926a04

01 Oct 2019 08:50:41,889 INFO : Status: created LVL2 GCT

01 Oct 2019 08:51:01,889 INFO : Checking status of job 5d937557d7148a0019926a04

01 Oct 2019 08:51:02,147 INFO : Status: created LVL2 GCT

01 Oct 2019 08:51:22,148 INFO : Checking status of job 5d937557d7148a0019926a04

01 Oct 2019 08:51:22,488 INFO : Status: created LVL2 GCT

01 Oct 2019 08:51:42,489 INFO : Checking status of job 5d937557d7148a0019926a04

01 Oct 2019 08:51:42,743 INFO : Status: created LVL2 GCT

01 Oct 2019 08:52:02,743 INFO : Checking status of job 5d937557d7148a0019926a04

01 Oct 2019 08:52:03,077 INFO : Status: created LVL2 GCT

01 Oct 2019 08:52:23,078 INFO : Checking status of job 5d937557d7148a0019926a04

01 Oct 2019 08:52:23,334 INFO : Status: created LVL2 GCT

01 Oct 2019 08:52:43,335 INFO : Checking status of job 5d937557d7148a0019926a04

01 Oct 2019 08:52:43,670 INFO : Status: created LVL2 GCT

01 Oct 2019 08:53:03,670 INFO : Checking status of job 5d937557d7148a0019926a04

01 Oct 2019 08:53:03,925 INFO : Status: created LVL2 GCT

01 Oct 2019 08:53:23,926 INFO : Checking status of job 5d937557d7148a0019926a04

01 Oct 2019 08:53:24,278 INFO : Status: created LVL2 GCT

01 Oct 2019 08:53:44,279 INFO : Checking status of job 5d937557d7148a0019926a04

01 Oct 2019 08:53:44,572 INFO : Status: created LVL2 GCT

01 Oct 2019 08:54:04,572 INFO : Checking status of job 5d937557d7148a0019926a04

01 Oct 2019 08:54:04,828 INFO : Status: created LVL2 GCT

01 Oct 2019 08:54:24,828 INFO : Checking status of job 5d937557d7148a0019926a04

01 Oct 2019 08:54:25,079 INFO : Status: created LVL2 GCT

01 Oct 2019 08:54:45,080 INFO : Checking status of job 5d937557d7148a0019926a04

01 Oct 2019 08:54:45,418 INFO : Status: created LVL2 GCT

01 Oct 2019 08:55:05,419 INFO : Checking status of job 5d937557d7148a0019926a04

01 Oct 2019 08:55:05,672 INFO : Status: created LVL2 GCT

01 Oct 2019 08:55:25,673 INFO : Checking status of job 5d937557d7148a0019926a04

01 Oct 2019 08:55:26,008 INFO : Status: created LVL2 GCT

01 Oct 2019 08:55:46,009 INFO : Checking status of job 5d937557d7148a0019926a04

01 Oct 2019 08:55:46,263 INFO : Status: created LVL2 GCT

01 Oct 2019 08:56:06,264 INFO : Checking status of job 5d937557d7148a0019926a04

01 Oct 2019 08:56:06,601 INFO : Status: created LVL2 GCT

01 Oct 2019 08:56:26,601 INFO : Checking status of job 5d937557d7148a0019926a04

01 Oct 2019 08:56:26,850 INFO : Status: created LVL 4 GCT

01 Oct 2019 08:56:46,851 INFO : Checking status of job 5d937557d7148a0019926a04

01 Oct 2019 08:56:47,189 INFO : Status: POUR : succeeded in uploading all GCTs to Panorama

01 Oct 2019 08:56:47,190 INFO : PSP job completed with status: POUR : succeeded in uploading all GCTs to Panorama

01 Oct 2019 08:56:47,190 INFO : Finished running LINCS PSP pipeline.

01 Oct 2019 08:56:47,191 INFO : Successfully completed task 'org.labkey.lincs.psp.LincsPspTask'

PanoramaWeb

PanoramaWeb

Re-running LINCS pipeline on PSP for: LINCS_GCP_Plate82_annotated_minimized_2019-09-23_11-24-24

Job Status

Log File