Re-running LINCS pipeline on PSP for: LINCS_GCP_Plate59_annotated_minimized_2019-09-26

Re-running LINCS pipeline on PSP for: LINCS_GCP_Plate59_annotated_minimized_2019-09-26_16-33-28

GCP

Job Status

Created:

2019-10-01 08:32:18

Modified:

2020-06-01 16:36:20

Email:

vsharma@uw.edu

Status:

COMPLETE

Info:

Description:

Re-running LINCS pipeline on PSP for: LINCS_GCP_Plate59_annotated_minimized_2019-09-26_16-33-28

File Path:

/data/labkey/files/LINCS/GCP/@files/LincsPSP_rerun_LINCS_GCP_Plate59_annotated_minimized_2019-09-26_16-33-28_2019-10-01_08-32-18.log

Files:

LincsPSP_rerun_LINCS_GCP_Plate59_annotated_minimized_2019-09-26_16-33-28_2019-10-01_08-32-18.log

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Log File

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01 Oct 2019 08:32:18,414 INFO : Re-running LINCS pipeline on PSP for:  LINCS_GCP_Plate59_annotated_minimized_2019-09-26_16-33-28

01 Oct 2019 08:32:18,414 INFO : =======================================

01 Oct 2019 08:32:18,980 INFO : Starting to run task 'org.labkey.lincs.psp.LincsPspTask' at location 'webserver-high-priority'

01 Oct 2019 08:32:18,980 INFO : Running LINCS PSP pipeline for LINCS_GCP_Plate59_annotated_minimized_2019-09-26_16-33-28

01 Oct 2019 08:32:18,980 INFO : Resubmitting job for runId: 75754, name: LINCS_GCP_Plate59_annotated_minimized_2019-09-26_16-33-28

01 Oct 2019 08:32:18,981 INFO : Old job details:

01 Oct 2019 08:32:18,981 INFO : Id: 228

01 Oct 2019 08:32:18,982 INFO : Pipeline job Id: 76550

01 Oct 2019 08:32:18,982 INFO : Run Id: 75754

01 Oct 2019 08:32:18,982 INFO : PSP Job Id: 5d923f4fd7148a001992690e

01 Oct 2019 08:32:18,983 INFO : PSP Job name: LINCS_GCP_Plate59_annotated_minimized_2019-09-26_16-33-28_3

01 Oct 2019 08:32:18,983 INFO : PSP Job status: created LVL2 GCT

01 Oct 2019 08:32:18,983 INFO : JSON: {"level 4":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate59_annotated_minimized_2019-09-26_16-33-28_LVL4.gct"}},"assay":"GCP","created":"2019-09-30T17:45:51.890Z","name":"LINCS_GCP_Plate59_annotated_minimized_2019-09-26_16-33-28_3","id":"5d923f4fd7148a001992690e","last_modified":"2019-09-30T17:45:57.478Z","config":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate59_annotated_minimized_2019-09-26_16-33-28.cfg"}},"level 2":{"s3":{"url":"s3://proteomics.clue.io/psp/level2/LINCS_GCP_Plate59_annotated_minimized_2019-09-26_16-33-28_3_LVL2.gct"},"panorama":{"method":"GET","url":"https://panoramaweb.org/lincs/LINCS/GCP/runGCTReportApi.view?runId=75754&remote=true&reportName=GCT%20File%20GCP"}},"status":"created LVL2 GCT","level 3":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate59_annotated_minimized_2019-09-26_16-33-28_LVL3.gct"}}}

01 Oct 2019 08:32:18,984 INFO : Resubmitting...

01 Oct 2019 08:32:18,987 INFO : Looking for existing job with name LINCS_GCP_Plate59_annotated_minimized_2019-09-26_16-33-28

01 Oct 2019 08:32:19,380 INFO : Job with name LINCS_GCP_Plate59_annotated_minimized_2019-09-26_16-33-28exists.

01 Oct 2019 08:32:19,381 INFO : Looking for existing job with name LINCS_GCP_Plate59_annotated_minimized_2019-09-26_16-33-28_2

01 Oct 2019 08:32:19,489 INFO : Job with name LINCS_GCP_Plate59_annotated_minimized_2019-09-26_16-33-28_2exists.

01 Oct 2019 08:32:19,489 INFO : Looking for existing job with name LINCS_GCP_Plate59_annotated_minimized_2019-09-26_16-33-28_3

01 Oct 2019 08:32:19,594 INFO : Job with name LINCS_GCP_Plate59_annotated_minimized_2019-09-26_16-33-28_3exists.

01 Oct 2019 08:32:19,594 INFO : Looking for existing job with name LINCS_GCP_Plate59_annotated_minimized_2019-09-26_16-33-28_4

01 Oct 2019 08:32:19,701 INFO : PSP job name: LINCS_GCP_Plate59_annotated_minimized_2019-09-26_16-33-28_4

01 Oct 2019 08:32:19,702 INFO : Sending JSON:

01 Oct 2019 08:32:19,703 INFO : {
  "level 4": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate59_annotated_minimized_2019-09-26_16-33-28_LVL4.gct"
  }},
  "assay": "GCP",
  "name": "LINCS_GCP_Plate59_annotated_minimized_2019-09-26_16-33-28_4",
  "config": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate59_annotated_minimized_2019-09-26_16-33-28.cfg"
  }},
  "level 2": {"panorama": {
    "method": "GET",
    "url": "https://panoramaweb.org/lincs/LINCS/GCP/runGCTReportApi.view?runId=75754&remote=true&reportName=GCT%20File%20GCP"
  }},
  "level 3": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate59_annotated_minimized_2019-09-26_16-33-28_LVL3.gct"
  }}
}

01 Oct 2019 08:32:19,703 INFO : Sending POST request to https://api.clue.io/api/psp

01 Oct 2019 08:32:19,934 INFO : Response code - 200

01 Oct 2019 08:32:19,934 INFO : Response from server: {"name":"LINCS_GCP_Plate59_annotated_minimized_2019-09-26_16-33-28_4","assay":"GCP","status":"Waiting_To_Download","id":"5d937183d7148a0019926a00","created":"2019-10-01T15:32:19.765Z","last_modified":"2019-10-01T15:32:19.765Z","level 2":{"panorama":{"method":"GET","url":"https://panoramaweb.org/lincs/LINCS/GCP/runGCTReportApi.view?runId=75754&remote=true&reportName=GCT%20File%20GCP"}},"level 3":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate59_annotated_minimized_2019-09-26_16-33-28_LVL3.gct"}},"level 4":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate59_annotated_minimized_2019-09-26_16-33-28_LVL4.gct"}},"config":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate59_annotated_minimized_2019-09-26_16-33-28.cfg"}}}

01 Oct 2019 08:32:19,935 INFO : Sent POST request to https://api.clue.io/api/psp

01 Oct 2019 08:32:19,939 INFO : Checking status of job 5d937183d7148a0019926a00

01 Oct 2019 08:32:20,722 INFO : Status: Waiting_To_Download

01 Oct 2019 08:32:40,723 INFO : Checking status of job 5d937183d7148a0019926a00

01 Oct 2019 08:32:40,974 INFO : Status: created LVL2 GCT

01 Oct 2019 08:33:00,975 INFO : Checking status of job 5d937183d7148a0019926a00

01 Oct 2019 08:33:01,232 INFO : Status: created LVL2 GCT

01 Oct 2019 08:33:21,232 INFO : Checking status of job 5d937183d7148a0019926a00

01 Oct 2019 08:33:21,485 INFO : Status: created LVL2 GCT

01 Oct 2019 08:33:41,486 INFO : Checking status of job 5d937183d7148a0019926a00

01 Oct 2019 08:33:41,741 INFO : Status: created LVL2 GCT

01 Oct 2019 08:34:01,742 INFO : Checking status of job 5d937183d7148a0019926a00

01 Oct 2019 08:34:01,999 INFO : Status: created LVL2 GCT

01 Oct 2019 08:34:22,000 INFO : Checking status of job 5d937183d7148a0019926a00

01 Oct 2019 08:34:22,262 INFO : Status: created LVL2 GCT

01 Oct 2019 08:34:42,262 INFO : Checking status of job 5d937183d7148a0019926a00

01 Oct 2019 08:34:42,516 INFO : Status: created LVL2 GCT

01 Oct 2019 08:35:02,517 INFO : Checking status of job 5d937183d7148a0019926a00

01 Oct 2019 08:35:02,852 INFO : Status: created LVL2 GCT

01 Oct 2019 08:35:22,853 INFO : Checking status of job 5d937183d7148a0019926a00

01 Oct 2019 08:35:23,104 INFO : Status: created LVL 3 GCT

01 Oct 2019 08:35:43,105 INFO : Checking status of job 5d937183d7148a0019926a00

01 Oct 2019 08:35:43,356 INFO : Status: POUR : succeeded in uploading all GCTs to Panorama

01 Oct 2019 08:35:43,357 INFO : PSP job completed with status: POUR : succeeded in uploading all GCTs to Panorama

01 Oct 2019 08:35:43,357 INFO : Finished running LINCS PSP pipeline.

01 Oct 2019 08:35:43,358 INFO : Successfully completed task 'org.labkey.lincs.psp.LincsPspTask'

PanoramaWeb

PanoramaWeb

Re-running LINCS pipeline on PSP for: LINCS_GCP_Plate59_annotated_minimized_2019-09-26_16-33-28

Job Status

Log File