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Re-running LINCS pipeline on PSP for: LINCS_GCP_Plate82_annotated_minimized_2019-09-23_11-24-24

GCP

Job Status

Created: 2019-09-30 10:56:40
Modified: 2020-06-01 16:36:20
Email: vsharma@uw.edu
Status: ERROR
Info:
Description: Re-running LINCS pipeline on PSP for: LINCS_GCP_Plate82_annotated_minimized_2019-09-23_11-24-24
File Path: /data/labkey/files/LINCS/GCP/@files/LincsPSP_rerun_LINCS_GCP_Plate82_annotated_minimized_2019-09-23_11-24-24_2019-09-30_10-56-39.log
Files: LincsPSP_rerun_LINCS_GCP_Plate82_annotated_minimized_2019-09-23_11-24-24_2019-09-30_10-56-39.log
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Log File


30 Sep 2019 10:56:39,871 INFO : Re-running LINCS pipeline on PSP for:  LINCS_GCP_Plate82_annotated_minimized_2019-09-23_11-24-24
30 Sep 2019 10:56:39,872 INFO : =======================================
30 Sep 2019 11:16:37,436 INFO : Starting to run task 'org.labkey.lincs.psp.LincsPspTask' at location 'webserver-high-priority'
30 Sep 2019 11:16:37,436 INFO : Running LINCS PSP pipeline for LINCS_GCP_Plate82_annotated_minimized_2019-09-23_11-24-24
30 Sep 2019 11:16:37,437 INFO : Resubmitting job for runId: 75542, name: LINCS_GCP_Plate82_annotated_minimized_2019-09-23_11-24-24
30 Sep 2019 11:16:37,437 INFO : Old job details: 
30 Sep 2019 11:16:37,437 INFO : Id: 225
30 Sep 2019 11:16:37,438 INFO : Pipeline job Id: 76196
30 Sep 2019 11:16:37,438 INFO : Run Id: 75542
30 Sep 2019 11:16:37,438 INFO : PSP Job Id: 5d89aa68d7148a001992625d
30 Sep 2019 11:16:37,439 INFO : PSP Job name: LINCS_GCP_Plate82_annotated_minimized_2019-09-23_11-24-24_4
30 Sep 2019 11:16:37,439 INFO : PSP Job status: created LVL2 GCT
30 Sep 2019 11:16:37,439 INFO : JSON: {"level 4":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate82_annotated_minimized_2019-09-23_11-24-24_LVL4.gct"}},"assay":"GCP","created":"2019-09-24T05:32:24.226Z","name":"LINCS_GCP_Plate82_annotated_minimized_2019-09-23_11-24-24_4","id":"5d89aa68d7148a001992625d","last_modified":"2019-09-24T05:32:29.945Z","config":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate82_annotated_minimized_2019-09-23_11-24-24.cfg"}},"level 2":{"s3":{"url":"s3://proteomics.clue.io/psp/level2/LINCS_GCP_Plate82_annotated_minimized_2019-09-23_11-24-24_4_LVL2.gct"},"panorama":{"method":"GET","url":"https://panoramaweb.org/lincs/LINCS/GCP/runGCTReportApi.view?runId=75542&remote=true&reportName=GCT%20File%20GCP"}},"status":"created LVL2 GCT","level 3":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate82_annotated_minimized_2019-09-23_11-24-24_LVL3.gct"}}}
30 Sep 2019 11:16:37,440 INFO : Resubmitting...
30 Sep 2019 11:16:37,442 INFO : Looking for existing job with name LINCS_GCP_Plate82_annotated_minimized_2019-09-23_11-24-24
30 Sep 2019 11:16:37,549 INFO : PSP job name: LINCS_GCP_Plate82_annotated_minimized_2019-09-23_11-24-24
30 Sep 2019 11:16:37,550 INFO : Sending JSON:
30 Sep 2019 11:16:37,551 INFO : {
  "level 4": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate82_annotated_minimized_2019-09-23_11-24-24_LVL4.gct"
  }},
  "assay": "GCP",
  "name": "LINCS_GCP_Plate82_annotated_minimized_2019-09-23_11-24-24",
  "config": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate82_annotated_minimized_2019-09-23_11-24-24.cfg"
  }},
  "level 2": {"panorama": {
    "method": "GET",
    "url": "https://panoramaweb.org/lincs/LINCS/GCP/runGCTReportApi.view?runId=75542&remote=true&reportName=GCT%20File%20GCP"
  }},
  "level 3": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate82_annotated_minimized_2019-09-23_11-24-24_LVL3.gct"
  }}
}
30 Sep 2019 11:16:37,551 INFO : Sending POST request to https://api.clue.io/api/psp
30 Sep 2019 11:16:37,800 INFO : Response code - 200
30 Sep 2019 11:16:37,800 INFO : Response from server: {"name":"LINCS_GCP_Plate82_annotated_minimized_2019-09-23_11-24-24","assay":"GCP","status":"Waiting_To_Download","id":"5d924685d7148a0019926913","created":"2019-09-30T18:16:37.615Z","last_modified":"2019-09-30T18:16:37.615Z","level 2":{"panorama":{"method":"GET","url":"https://panoramaweb.org/lincs/LINCS/GCP/runGCTReportApi.view?runId=75542&remote=true&reportName=GCT%20File%20GCP"}},"level 3":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate82_annotated_minimized_2019-09-23_11-24-24_LVL3.gct"}},"level 4":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate82_annotated_minimized_2019-09-23_11-24-24_LVL4.gct"}},"config":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate82_annotated_minimized_2019-09-23_11-24-24.cfg"}}}
30 Sep 2019 11:16:37,801 INFO : Sent POST request to https://api.clue.io/api/psp
30 Sep 2019 11:16:37,803 INFO : Checking status of job 5d924685d7148a0019926913
30 Sep 2019 11:16:37,910 INFO : Status: Waiting_To_Download
30 Sep 2019 11:16:57,911 INFO : Checking status of job 5d924685d7148a0019926913
30 Sep 2019 11:16:58,167 INFO : Status: created LVL2 GCT
30 Sep 2019 11:17:18,168 INFO : Checking status of job 5d924685d7148a0019926913
30 Sep 2019 11:17:18,422 INFO : Status: created LVL2 GCT
30 Sep 2019 11:17:38,423 INFO : Checking status of job 5d924685d7148a0019926913
30 Sep 2019 11:17:38,755 INFO : Status: created LVL2 GCT
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30 Sep 2019 11:17:59,012 INFO : Status: created LVL2 GCT
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30 Sep 2019 11:18:19,266 INFO : Status: created LVL2 GCT
30 Sep 2019 11:18:39,266 INFO : Checking status of job 5d924685d7148a0019926913
30 Sep 2019 11:18:39,520 INFO : Status: created LVL2 GCT
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30 Sep 2019 11:47:23,598 INFO : Status: created LVL2 GCT
30 Sep 2019 11:47:23,599 ERROR: Exceeded 30 minute wait time.
30 Sep 2019 11:47:24,211 INFO : Finished running LINCS PSP pipeline.
30 Sep 2019 11:47:24,211 INFO : Successfully completed task 'org.labkey.lincs.psp.LincsPspTask'