Re-running LINCS pipeline on PSP for: LINCS_GCP_Plate59_annotated_minimized_2019-09-26

Re-running LINCS pipeline on PSP for: LINCS_GCP_Plate59_annotated_minimized_2019-09-26_16-33-28

GCP

Job Status

Created:

2019-09-30 10:43:31

Modified:

2020-06-01 16:36:20

Email:

vsharma@uw.edu

Status:

ERROR

Info:

Description:

Re-running LINCS pipeline on PSP for: LINCS_GCP_Plate59_annotated_minimized_2019-09-26_16-33-28

File Path:

/data/labkey/files/LINCS/GCP/@files/LincsPSP_rerun_LINCS_GCP_Plate59_annotated_minimized_2019-09-26_16-33-28_2019-09-30_10-43-30.log

Files:

LincsPSP_rerun_LINCS_GCP_Plate59_annotated_minimized_2019-09-26_16-33-28_2019-09-30_10-43-30.log

Join job:

Status	Description

Split jobs:

Status	Description

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Log File

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30 Sep 2019 10:43:31,369 INFO : Re-running LINCS pipeline on PSP for:  LINCS_GCP_Plate59_annotated_minimized_2019-09-26_16-33-28

30 Sep 2019 10:43:31,369 INFO : =======================================

30 Sep 2019 10:45:51,328 INFO : Starting to run task 'org.labkey.lincs.psp.LincsPspTask' at location 'webserver-high-priority'

30 Sep 2019 10:45:51,329 INFO : Running LINCS PSP pipeline for LINCS_GCP_Plate59_annotated_minimized_2019-09-26_16-33-28

30 Sep 2019 10:45:51,333 INFO : Resubmitting job for runId: 75754, name: LINCS_GCP_Plate59_annotated_minimized_2019-09-26_16-33-28

30 Sep 2019 10:45:51,333 INFO : Old job details:

30 Sep 2019 10:45:51,334 INFO : Id: 227

30 Sep 2019 10:45:51,334 INFO : Pipeline job Id: 76366

30 Sep 2019 10:45:51,335 INFO : Run Id: 75754

30 Sep 2019 10:45:51,335 INFO : PSP Job Id: 5d8d5133d7148a00199265ae

30 Sep 2019 10:45:51,336 INFO : PSP Job name: LINCS_GCP_Plate59_annotated_minimized_2019-09-26_16-33-28_2

30 Sep 2019 10:45:51,336 INFO : PSP Job status: created LVL 3 GCT

30 Sep 2019 10:45:51,336 INFO : JSON: {"level 4":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate59_annotated_minimized_2019-09-26_16-33-28_LVL4.gct"}},"assay":"GCP","created":"2019-09-27T00:00:51.169Z","name":"LINCS_GCP_Plate59_annotated_minimized_2019-09-26_16-33-28_2","id":"5d8d5133d7148a00199265ae","last_modified":"2019-09-30T16:41:33.713Z","config":{"s3":{"url":"s3://proteomics.clue.io/psp/config/LINCS_GCP_Plate59_annotated_minimized_2019-09-26_16-33-28_2.cfg"},"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate59_annotated_minimized_2019-09-26_16-33-28.cfg"}},"level 2":{"s3":{"url":"s3://proteomics.clue.io/psp/level2/LINCS_GCP_Plate59_annotated_minimized_2019-09-26_16-33-28_2_LVL2.gct"},"panorama":{"method":"GET","url":"https://panoramaweb.org/lincs/LINCS/GCP/runGCTReportApi.view?runId=75754&remote=true&reportName=GCT%20File%20GCP"}},"status":"created LVL 3 GCT","level 3":{"s3":{"url":"s3://proteomics.clue.io/psp/level3/LINCS_GCP_Plate59_annotated_minimized_2019-09-26_16-33-28_2_LVL3.gct"},"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate59_annotated_minimized_2019-09-26_16-33-28_LVL3.gct"}}}

30 Sep 2019 10:45:51,337 INFO : Resubmitting...

30 Sep 2019 10:45:51,340 INFO : Looking for existing job with name LINCS_GCP_Plate59_annotated_minimized_2019-09-26_16-33-28

30 Sep 2019 10:45:51,608 INFO : Job with name LINCS_GCP_Plate59_annotated_minimized_2019-09-26_16-33-28exists.

30 Sep 2019 10:45:51,612 INFO : Looking for existing job with name LINCS_GCP_Plate59_annotated_minimized_2019-09-26_16-33-28_2

30 Sep 2019 10:45:51,718 INFO : Job with name LINCS_GCP_Plate59_annotated_minimized_2019-09-26_16-33-28_2exists.

30 Sep 2019 10:45:51,719 INFO : Looking for existing job with name LINCS_GCP_Plate59_annotated_minimized_2019-09-26_16-33-28_3

30 Sep 2019 10:45:51,824 INFO : PSP job name: LINCS_GCP_Plate59_annotated_minimized_2019-09-26_16-33-28_3

30 Sep 2019 10:45:51,826 INFO : Sending JSON:

30 Sep 2019 10:45:51,826 INFO : {
  "level 4": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate59_annotated_minimized_2019-09-26_16-33-28_LVL4.gct"
  }},
  "assay": "GCP",
  "name": "LINCS_GCP_Plate59_annotated_minimized_2019-09-26_16-33-28_3",
  "config": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate59_annotated_minimized_2019-09-26_16-33-28.cfg"
  }},
  "level 2": {"panorama": {
    "method": "GET",
    "url": "https://panoramaweb.org/lincs/LINCS/GCP/runGCTReportApi.view?runId=75754&remote=true&reportName=GCT%20File%20GCP"
  }},
  "level 3": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate59_annotated_minimized_2019-09-26_16-33-28_LVL3.gct"
  }}
}

30 Sep 2019 10:45:51,828 INFO : Sending POST request to https://api.clue.io/api/psp

30 Sep 2019 10:45:51,992 INFO : Response code - 200

30 Sep 2019 10:45:51,993 INFO : Response from server: {"name":"LINCS_GCP_Plate59_annotated_minimized_2019-09-26_16-33-28_3","assay":"GCP","status":"Waiting_To_Download","id":"5d923f4fd7148a001992690e","created":"2019-09-30T17:45:51.890Z","last_modified":"2019-09-30T17:45:51.890Z","level 2":{"panorama":{"method":"GET","url":"https://panoramaweb.org/lincs/LINCS/GCP/runGCTReportApi.view?runId=75754&remote=true&reportName=GCT%20File%20GCP"}},"level 3":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate59_annotated_minimized_2019-09-26_16-33-28_LVL3.gct"}},"level 4":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate59_annotated_minimized_2019-09-26_16-33-28_LVL4.gct"}},"config":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate59_annotated_minimized_2019-09-26_16-33-28.cfg"}}}

30 Sep 2019 10:45:51,994 INFO : Sent POST request to https://api.clue.io/api/psp

30 Sep 2019 10:45:51,996 INFO : Checking status of job 5d923f4fd7148a001992690e

30 Sep 2019 10:45:52,103 INFO : Status: Waiting_To_Download

30 Sep 2019 10:46:12,103 INFO : Checking status of job 5d923f4fd7148a001992690e

30 Sep 2019 10:46:12,353 INFO : Status: created LVL2 GCT

30 Sep 2019 10:46:32,354 INFO : Checking status of job 5d923f4fd7148a001992690e

30 Sep 2019 10:46:32,607 INFO : Status: created LVL2 GCT

30 Sep 2019 10:46:52,608 INFO : Checking status of job 5d923f4fd7148a001992690e

30 Sep 2019 10:46:52,862 INFO : Status: created LVL2 GCT

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30 Sep 2019 10:47:13,119 INFO : Status: created LVL2 GCT

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30 Sep 2019 10:47:33,373 INFO : Status: created LVL2 GCT

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30 Sep 2019 10:47:53,628 INFO : Status: created LVL2 GCT

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30 Sep 2019 10:48:13,891 INFO : Status: created LVL2 GCT

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30 Sep 2019 10:48:34,143 INFO : Status: created LVL2 GCT

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30 Sep 2019 10:48:54,404 INFO : Status: created LVL2 GCT

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30 Sep 2019 10:49:34,921 INFO : Status: created LVL2 GCT

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30 Sep 2019 11:16:36,521 INFO : Status: created LVL2 GCT

30 Sep 2019 11:16:36,521 ERROR: Exceeded 30 minute wait time.

30 Sep 2019 11:16:37,098 INFO : Finished running LINCS PSP pipeline.

30 Sep 2019 11:16:37,098 INFO : Successfully completed task 'org.labkey.lincs.psp.LincsPspTask'

PanoramaWeb

PanoramaWeb

Re-running LINCS pipeline on PSP for: LINCS_GCP_Plate59_annotated_minimized_2019-09-26_16-33-28

Job Status

Log File