Re-running LINCS pipeline on PSP for: LINCS_GCP_Plate59_annotated_minimized_2019-09-26

Re-running LINCS pipeline on PSP for: LINCS_GCP_Plate59_annotated_minimized_2019-09-26_16-33-28

GCP

Job Status

Created:

2019-09-26 17:00:50

Modified:

2020-06-01 16:36:20

Email:

vsharma@uw.edu

Status:

ERROR

Info:

Description:

Re-running LINCS pipeline on PSP for: LINCS_GCP_Plate59_annotated_minimized_2019-09-26_16-33-28

File Path:

/data/labkey/files/LINCS/GCP/@files/LincsPSP_rerun_LINCS_GCP_Plate59_annotated_minimized_2019-09-26_16-33-28_2019-09-26_17-00-49.log

Files:

LincsPSP_rerun_LINCS_GCP_Plate59_annotated_minimized_2019-09-26_16-33-28_2019-09-26_17-00-49.log

Join job:

Status	Description

Split jobs:

Status	Description

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Log File

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26 Sep 2019 17:00:50,206 INFO : Re-running LINCS pipeline on PSP for:  LINCS_GCP_Plate59_annotated_minimized_2019-09-26_16-33-28

26 Sep 2019 17:00:50,206 INFO : =======================================

26 Sep 2019 17:00:50,632 INFO : Starting to run task 'org.labkey.lincs.psp.LincsPspTask' at location 'webserver-high-priority'

26 Sep 2019 17:00:50,632 INFO : Running LINCS PSP pipeline for LINCS_GCP_Plate59_annotated_minimized_2019-09-26_16-33-28

26 Sep 2019 17:00:50,632 INFO : Resubmitting job for runId: 75754, name: LINCS_GCP_Plate59_annotated_minimized_2019-09-26_16-33-28

26 Sep 2019 17:00:50,633 INFO : Old job details:

26 Sep 2019 17:00:50,633 INFO : Id: 226

26 Sep 2019 17:00:50,633 INFO : Pipeline job Id: 76353

26 Sep 2019 17:00:50,634 INFO : Run Id: 75754

26 Sep 2019 17:00:50,634 INFO : PSP Job Id: 5d8d2302d7148a0019926585

26 Sep 2019 17:00:50,634 INFO : PSP Job name: LINCS_GCP_Plate59_annotated_minimized_2019-09-26_16-33-28

26 Sep 2019 17:00:50,635 INFO : PSP Job status: Waiting_To_Download

26 Sep 2019 17:00:50,635 INFO : JSON: {"level 4":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate59_annotated_minimized_2019-09-26_16-33-28_LVL4.gct"}},"assay":"GCP","created":"2019-09-26T20:43:46.387Z","name":"LINCS_GCP_Plate59_annotated_minimized_2019-09-26_16-33-28","id":"5d8d2302d7148a0019926585","last_modified":"2019-09-26T20:43:46.387Z","config":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate59_annotated_minimized_2019-09-26_16-33-28.cfg"}},"level 2":{"panorama":{"method":"GET","url":"https://panoramaweb.org/lincs/LINCS/GCP/runGCTReportApi.view?runId=75754&remote=true&reportName=GCT%20File%20GCP"}},"status":"Waiting_To_Download","level 3":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate59_annotated_minimized_2019-09-26_16-33-28_LVL3.gct"}}}

26 Sep 2019 17:00:50,635 INFO : Resubmitting...

26 Sep 2019 17:00:50,638 INFO : Looking for existing job with name LINCS_GCP_Plate59_annotated_minimized_2019-09-26_16-33-28

26 Sep 2019 17:00:50,978 INFO : Job with name LINCS_GCP_Plate59_annotated_minimized_2019-09-26_16-33-28exists.

26 Sep 2019 17:00:50,979 INFO : Looking for existing job with name LINCS_GCP_Plate59_annotated_minimized_2019-09-26_16-33-28_2

26 Sep 2019 17:00:51,086 INFO : PSP job name: LINCS_GCP_Plate59_annotated_minimized_2019-09-26_16-33-28_2

26 Sep 2019 17:00:51,087 INFO : Sending JSON:

26 Sep 2019 17:00:51,088 INFO : {
  "level 4": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate59_annotated_minimized_2019-09-26_16-33-28_LVL4.gct"
  }},
  "assay": "GCP",
  "name": "LINCS_GCP_Plate59_annotated_minimized_2019-09-26_16-33-28_2",
  "config": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate59_annotated_minimized_2019-09-26_16-33-28.cfg"
  }},
  "level 2": {"panorama": {
    "method": "GET",
    "url": "https://panoramaweb.org/lincs/LINCS/GCP/runGCTReportApi.view?runId=75754&remote=true&reportName=GCT%20File%20GCP"
  }},
  "level 3": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate59_annotated_minimized_2019-09-26_16-33-28_LVL3.gct"
  }}
}

26 Sep 2019 17:00:51,107 INFO : Sending POST request to https://api.clue.io/api/psp

26 Sep 2019 17:00:51,375 INFO : Response code - 200

26 Sep 2019 17:00:51,376 INFO : Response from server: {"name":"LINCS_GCP_Plate59_annotated_minimized_2019-09-26_16-33-28_2","assay":"GCP","status":"Waiting_To_Download","id":"5d8d5133d7148a00199265ae","created":"2019-09-27T00:00:51.169Z","last_modified":"2019-09-27T00:00:51.169Z","level 2":{"panorama":{"method":"GET","url":"https://panoramaweb.org/lincs/LINCS/GCP/runGCTReportApi.view?runId=75754&remote=true&reportName=GCT%20File%20GCP"}},"level 3":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate59_annotated_minimized_2019-09-26_16-33-28_LVL3.gct"}},"level 4":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate59_annotated_minimized_2019-09-26_16-33-28_LVL4.gct"}},"config":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate59_annotated_minimized_2019-09-26_16-33-28.cfg"}}}

26 Sep 2019 17:00:51,377 INFO : Sent POST request to https://api.clue.io/api/psp

26 Sep 2019 17:00:51,379 INFO : Checking status of job 5d8d5133d7148a00199265ae

26 Sep 2019 17:00:51,486 INFO : Status: Waiting_To_Download

26 Sep 2019 17:01:11,486 INFO : Checking status of job 5d8d5133d7148a00199265ae

26 Sep 2019 17:01:11,738 INFO : Status: created LVL2 GCT

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26 Sep 2019 17:31:36,414 ERROR: Exceeded 30 minute wait time.

26 Sep 2019 17:31:37,173 INFO : Finished running LINCS PSP pipeline.

26 Sep 2019 17:31:37,174 INFO : Successfully completed task 'org.labkey.lincs.psp.LincsPspTask'

PanoramaWeb

PanoramaWeb

Re-running LINCS pipeline on PSP for: LINCS_GCP_Plate59_annotated_minimized_2019-09-26_16-33-28

Job Status

Log File