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Re-running LINCS pipeline on PSP for: LINCS_GCP_Plate82_annotated_minimized_2019-09-23_11-24-24

GCP

Job Status

Created: 2019-09-23 09:59:50
Modified: 2020-06-01 16:36:20
Email: vsharma@uw.edu
Status: ERROR
Info:
Description: Re-running LINCS pipeline on PSP for: LINCS_GCP_Plate82_annotated_minimized_2019-09-23_11-24-24
File Path: /data/labkey/files/LINCS/GCP/@files/LincsPSP_rerun_LINCS_GCP_Plate82_annotated_minimized_2019-09-23_11-24-24_2019-09-23_09-59-49.log
Files: LincsPSP_rerun_LINCS_GCP_Plate82_annotated_minimized_2019-09-23_11-24-24_2019-09-23_09-59-49.log
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Log File


23 Sep 2019 09:59:50,712 INFO : Re-running LINCS pipeline on PSP for:  LINCS_GCP_Plate82_annotated_minimized_2019-09-23_11-24-24
23 Sep 2019 09:59:50,712 INFO : =======================================
23 Sep 2019 09:59:51,060 INFO : Starting to run task 'org.labkey.lincs.psp.LincsPspTask' at location 'webserver-high-priority'
23 Sep 2019 09:59:51,061 INFO : Running LINCS PSP pipeline for LINCS_GCP_Plate82_annotated_minimized_2019-09-23_11-24-24
23 Sep 2019 09:59:51,062 INFO : Resubmitting job for runId: 75542, name: LINCS_GCP_Plate82_annotated_minimized_2019-09-23_11-24-24
23 Sep 2019 09:59:51,062 INFO : Old job details: 
23 Sep 2019 09:59:51,062 INFO : Id: 222
23 Sep 2019 09:59:51,063 INFO : Pipeline job Id: 76134
23 Sep 2019 09:59:51,063 INFO : Run Id: 75542
23 Sep 2019 09:59:51,064 INFO : PSP Job Id: 5d88e477d7148a00199261b8
23 Sep 2019 09:59:51,064 INFO : PSP Job name: LINCS_GCP_Plate82_annotated_minimized_2019-09-23_11-24-24
23 Sep 2019 09:59:51,065 INFO : PSP Job status: Waiting_To_Download
23 Sep 2019 09:59:51,065 INFO : JSON: {"level 4":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate82_annotated_minimized_2019-09-23_11-24-24_LVL4.gct"}},"assay":"GCP","created":"2019-09-23T15:27:51.661Z","name":"LINCS_GCP_Plate82_annotated_minimized_2019-09-23_11-24-24","id":"5d88e477d7148a00199261b8","last_modified":"2019-09-23T15:27:51.661Z","config":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate82_annotated_minimized_2019-09-23_11-24-24.cfg"}},"level 2":{"panorama":{"method":"GET","url":"https://panoramaweb.org/lincs/LINCS/GCP/runGCTReportApi.view?runId=75542&remote=true&reportName=GCT%20File%20GCP"}},"status":"Waiting_To_Download","level 3":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate82_annotated_minimized_2019-09-23_11-24-24_LVL3.gct"}}}
23 Sep 2019 09:59:51,065 INFO : Resubmitting...
23 Sep 2019 09:59:51,068 INFO : Looking for existing job with name LINCS_GCP_Plate82_annotated_minimized_2019-09-23_11-24-24
23 Sep 2019 09:59:51,432 INFO : Job with name LINCS_GCP_Plate82_annotated_minimized_2019-09-23_11-24-24exists.
23 Sep 2019 09:59:51,436 INFO : Looking for existing job with name LINCS_GCP_Plate82_annotated_minimized_2019-09-23_11-24-24_2
23 Sep 2019 09:59:51,540 INFO : PSP job name: LINCS_GCP_Plate82_annotated_minimized_2019-09-23_11-24-24_2
23 Sep 2019 09:59:51,541 INFO : Sending JSON:
23 Sep 2019 09:59:51,542 INFO : {
  "level 4": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate82_annotated_minimized_2019-09-23_11-24-24_LVL4.gct"
  }},
  "assay": "GCP",
  "name": "LINCS_GCP_Plate82_annotated_minimized_2019-09-23_11-24-24_2",
  "config": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate82_annotated_minimized_2019-09-23_11-24-24.cfg"
  }},
  "level 2": {"panorama": {
    "method": "GET",
    "url": "https://panoramaweb.org/lincs/LINCS/GCP/runGCTReportApi.view?runId=75542&remote=true&reportName=GCT%20File%20GCP"
  }},
  "level 3": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate82_annotated_minimized_2019-09-23_11-24-24_LVL3.gct"
  }}
}
23 Sep 2019 09:59:51,542 INFO : Sending POST request to https://api.clue.io/api/psp
23 Sep 2019 09:59:51,747 INFO : Response code - 200
23 Sep 2019 09:59:51,747 INFO : Response from server: {"name":"LINCS_GCP_Plate82_annotated_minimized_2019-09-23_11-24-24_2","assay":"GCP","status":"Waiting_To_Download","id":"5d88fa07d7148a00199261ce","created":"2019-09-23T16:59:51.607Z","last_modified":"2019-09-23T16:59:51.607Z","level 2":{"panorama":{"method":"GET","url":"https://panoramaweb.org/lincs/LINCS/GCP/runGCTReportApi.view?runId=75542&remote=true&reportName=GCT%20File%20GCP"}},"level 3":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate82_annotated_minimized_2019-09-23_11-24-24_LVL3.gct"}},"level 4":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate82_annotated_minimized_2019-09-23_11-24-24_LVL4.gct"}},"config":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate82_annotated_minimized_2019-09-23_11-24-24.cfg"}}}
23 Sep 2019 09:59:51,748 INFO : Sent POST request to https://api.clue.io/api/psp
23 Sep 2019 09:59:51,751 INFO : Checking status of job 5d88fa07d7148a00199261ce
23 Sep 2019 09:59:51,857 INFO : Status: Waiting_To_Download
23 Sep 2019 10:00:11,857 INFO : Checking status of job 5d88fa07d7148a00199261ce
23 Sep 2019 10:00:12,127 INFO : Status: created LVL2 GCT
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23 Sep 2019 10:30:36,732 ERROR: Exceeded 30 minute wait time.
23 Sep 2019 10:30:36,851 INFO : Finished running LINCS PSP pipeline.
23 Sep 2019 10:30:36,851 INFO : Successfully completed task 'org.labkey.lincs.psp.LincsPspTask'