Running LINCS pipeline on PSP for: LINCS_GCP_Plate63_annotated_minimized_2019-09-12_11-57-23

GCP

Job Status

Created: 2019-09-12 09:05:40
Modified: 2020-06-01 16:36:20
Email: karen@broadinstitute.org
Status: ERROR
Info:
Description: Running LINCS pipeline on PSP for: LINCS_GCP_Plate63_annotated_minimized_2019-09-12_11-57-23
File Path: /data/labkey/files/LINCS/GCP/@files/LincsPSP_LINCS_GCP_Plate63_annotated_minimized_2019-09-12_11-57-23_2019-09-12_09-05-40.log
Files: LincsPSP_LINCS_GCP_Plate63_annotated_minimized_2019-09-12_11-57-23_2019-09-12_09-05-40.log

Log File


12 Sep 2019 09:05:40,540 INFO : Running LINCS pipeline on PSP for: LINCS_GCP_Plate63_annotated_minimized_2019-09-12_11-57-23
12 Sep 2019 09:05:40,540 INFO : =======================================
12 Sep 2019 09:05:41,315 INFO : Starting to run task 'org.labkey.lincs.psp.LincsPspTask' at location 'webserver-high-priority'
12 Sep 2019 09:05:41,315 INFO : Running LINCS PSP pipeline for LINCS_GCP_Plate63_annotated_minimized_2019-09-12_11-57-23
12 Sep 2019 09:05:41,315 INFO : Submitting job for runId: 74230, name: LINCS_GCP_Plate63_annotated_minimized_2019-09-12_11-57-23
12 Sep 2019 09:05:41,317 INFO : Looking for existing job with name LINCS_GCP_Plate63_annotated_minimized_2019-09-12_11-57-23
12 Sep 2019 09:05:41,613 INFO : PSP job name: LINCS_GCP_Plate63_annotated_minimized_2019-09-12_11-57-23
12 Sep 2019 09:05:41,614 INFO : Sending JSON:
12 Sep 2019 09:05:41,614 INFO : { "level 4": {"panorama": { "method": "PUT", "url": "https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate63_annotated_minimized_2019-09-12_11-57-23_LVL4.gct" }}, "assay": "GCP", "name": "LINCS_GCP_Plate63_annotated_minimized_2019-09-12_11-57-23", "config": {"panorama": { "method": "PUT", "url": "https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate63_annotated_minimized_2019-09-12_11-57-23.cfg" }}, "level 2": {"panorama": { "method": "GET", "url": "https://panoramaweb.org/lincs/LINCS/GCP/runGCTReportApi.view?runId=74230&remote=true&reportName=GCT%20File%20GCP" }}, "level 3": {"panorama": { "method": "PUT", "url": "https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate63_annotated_minimized_2019-09-12_11-57-23_LVL3.gct" }} }
12 Sep 2019 09:05:41,614 INFO : Sending POST request to https://api.clue.io/api/psp
12 Sep 2019 09:05:41,794 INFO : Response code - 200
12 Sep 2019 09:05:41,795 INFO : Response from server: {"name":"LINCS_GCP_Plate63_annotated_minimized_2019-09-12_11-57-23","assay":"GCP","status":"Waiting_To_Download","id":"5d7a6cd5df6ca20013c3edc9","created":"2019-09-12T16:05:41.677Z","last_modified":"2019-09-12T16:05:41.677Z","level 2":{"panorama":{"method":"GET","url":"https://panoramaweb.org/lincs/LINCS/GCP/runGCTReportApi.view?runId=74230&remote=true&reportName=GCT%20File%20GCP"}},"level 3":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate63_annotated_minimized_2019-09-12_11-57-23_LVL3.gct"}},"level 4":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate63_annotated_minimized_2019-09-12_11-57-23_LVL4.gct"}},"config":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate63_annotated_minimized_2019-09-12_11-57-23.cfg"}}}
12 Sep 2019 09:05:41,795 INFO : Sent POST request to https://api.clue.io/api/psp
12 Sep 2019 09:05:41,797 INFO : Checking status of job 5d7a6cd5df6ca20013c3edc9
12 Sep 2019 09:05:41,902 INFO : Status: Waiting_To_Download
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12 Sep 2019 09:36:29,295 ERROR: Exceeded 30 minute wait time.
12 Sep 2019 09:36:29,892 INFO : Finished running LINCS PSP pipeline.
12 Sep 2019 09:36:29,892 INFO : Successfully completed task 'org.labkey.lincs.psp.LincsPspTask'