Running LINCS pipeline on PSP for: LINCS_GCP_Plate81_annotated_minimized_2019-09-11

Running LINCS pipeline on PSP for: LINCS_GCP_Plate81_annotated_minimized_2019-09-11_09-07-54

GCP

Job Status

Created:

2019-09-11 06:11:39

Modified:

2020-06-01 16:36:20

Email:

jmulla@broadinstitute.org

Status:

ERROR

Info:

Description:

Running LINCS pipeline on PSP for: LINCS_GCP_Plate81_annotated_minimized_2019-09-11_09-07-54

File Path:

/data/labkey/files/LINCS/GCP/@files/LincsPSP_LINCS_GCP_Plate81_annotated_minimized_2019-09-11_09-07-54_2019-09-11_06-11-38.log

Files:

LincsPSP_LINCS_GCP_Plate81_annotated_minimized_2019-09-11_09-07-54_2019-09-11_06-11-38.log

Join job:

Status	Description

Split jobs:

Status	Description

Show Grid Browse Files

Log File

Show full log file Show raw log file Copy to clipboard

11 Sep 2019 06:11:39,444 INFO : Running LINCS pipeline on PSP for:  LINCS_GCP_Plate81_annotated_minimized_2019-09-11_09-07-54

11 Sep 2019 06:11:39,445 INFO : =======================================

11 Sep 2019 06:11:40,386 INFO : Starting to run task 'org.labkey.lincs.psp.LincsPspTask' at location 'webserver-high-priority'

11 Sep 2019 06:11:40,387 INFO : Running LINCS PSP pipeline for LINCS_GCP_Plate81_annotated_minimized_2019-09-11_09-07-54

11 Sep 2019 06:11:40,390 INFO : Submitting job for runId: 74161, name: LINCS_GCP_Plate81_annotated_minimized_2019-09-11_09-07-54

11 Sep 2019 06:11:40,395 INFO : Looking for existing job with name LINCS_GCP_Plate81_annotated_minimized_2019-09-11_09-07-54

11 Sep 2019 06:11:41,060 INFO : PSP job name: LINCS_GCP_Plate81_annotated_minimized_2019-09-11_09-07-54

11 Sep 2019 06:11:41,062 INFO : Sending JSON:

11 Sep 2019 06:11:41,062 INFO : {
  "level 4": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate81_annotated_minimized_2019-09-11_09-07-54_LVL4.gct"
  }},
  "assay": "GCP",
  "name": "LINCS_GCP_Plate81_annotated_minimized_2019-09-11_09-07-54",
  "config": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate81_annotated_minimized_2019-09-11_09-07-54.cfg"
  }},
  "level 2": {"panorama": {
    "method": "GET",
    "url": "https://panoramaweb.org/lincs/LINCS/GCP/runGCTReportApi.view?runId=74161&remote=true&reportName=GCT%20File%20GCP"
  }},
  "level 3": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate81_annotated_minimized_2019-09-11_09-07-54_LVL3.gct"
  }}
}

11 Sep 2019 06:11:41,063 INFO : Sending POST request to https://api.clue.io/api/psp

11 Sep 2019 06:11:41,312 INFO : Response code - 200

11 Sep 2019 06:11:41,313 INFO : Response from server: {"name":"LINCS_GCP_Plate81_annotated_minimized_2019-09-11_09-07-54","assay":"GCP","status":"Waiting_To_Download","id":"5d78f28dd6f7f500136ab13e","created":"2019-09-11T13:11:41.127Z","last_modified":"2019-09-11T13:11:41.127Z","level 2":{"panorama":{"method":"GET","url":"https://panoramaweb.org/lincs/LINCS/GCP/runGCTReportApi.view?runId=74161&remote=true&reportName=GCT%20File%20GCP"}},"level 3":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate81_annotated_minimized_2019-09-11_09-07-54_LVL3.gct"}},"level 4":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate81_annotated_minimized_2019-09-11_09-07-54_LVL4.gct"}},"config":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate81_annotated_minimized_2019-09-11_09-07-54.cfg"}}}

11 Sep 2019 06:11:41,321 INFO : Sent POST request to https://api.clue.io/api/psp

11 Sep 2019 06:11:41,325 INFO : Checking status of job 5d78f28dd6f7f500136ab13e

11 Sep 2019 06:11:41,434 INFO : Status: Waiting_To_Download

11 Sep 2019 06:12:01,435 INFO : Checking status of job 5d78f28dd6f7f500136ab13e

11 Sep 2019 06:12:01,689 INFO : Status: Waiting_To_Download

11 Sep 2019 06:12:21,690 INFO : Checking status of job 5d78f28dd6f7f500136ab13e

11 Sep 2019 06:12:21,943 INFO : Status: Waiting_To_Download

11 Sep 2019 06:12:41,944 INFO : Checking status of job 5d78f28dd6f7f500136ab13e

11 Sep 2019 06:12:42,198 INFO : Status: Waiting_To_Download

11 Sep 2019 06:13:02,198 INFO : Checking status of job 5d78f28dd6f7f500136ab13e

11 Sep 2019 06:13:02,535 INFO : Status: Waiting_To_Download

11 Sep 2019 06:13:22,536 INFO : Checking status of job 5d78f28dd6f7f500136ab13e

11 Sep 2019 06:13:22,783 INFO : Status: Waiting_To_Download

11 Sep 2019 06:13:42,783 INFO : Checking status of job 5d78f28dd6f7f500136ab13e

11 Sep 2019 06:13:43,039 INFO : Status: Waiting_To_Download

11 Sep 2019 06:14:03,039 INFO : Checking status of job 5d78f28dd6f7f500136ab13e

11 Sep 2019 06:14:03,291 INFO : Status: Waiting_To_Download

11 Sep 2019 06:14:23,291 INFO : Checking status of job 5d78f28dd6f7f500136ab13e

11 Sep 2019 06:14:23,543 INFO : Status: Waiting_To_Download

11 Sep 2019 06:14:43,543 INFO : Checking status of job 5d78f28dd6f7f500136ab13e

11 Sep 2019 06:14:43,800 INFO : Status: Waiting_To_Download

11 Sep 2019 06:15:03,800 INFO : Checking status of job 5d78f28dd6f7f500136ab13e

11 Sep 2019 06:15:04,054 INFO : Status: Waiting_To_Download

11 Sep 2019 06:15:24,055 INFO : Checking status of job 5d78f28dd6f7f500136ab13e

11 Sep 2019 06:15:24,313 INFO : Status: Waiting_To_Download

11 Sep 2019 06:15:44,314 INFO : Checking status of job 5d78f28dd6f7f500136ab13e

11 Sep 2019 06:15:44,636 INFO : Status: Waiting_To_Download

11 Sep 2019 06:16:04,637 INFO : Checking status of job 5d78f28dd6f7f500136ab13e

11 Sep 2019 06:16:04,896 INFO : Status: Waiting_To_Download

11 Sep 2019 06:16:24,897 INFO : Checking status of job 5d78f28dd6f7f500136ab13e

11 Sep 2019 06:16:25,226 INFO : Status: Waiting_To_Download

11 Sep 2019 06:16:45,227 INFO : Checking status of job 5d78f28dd6f7f500136ab13e

11 Sep 2019 06:16:45,476 INFO : Status: Waiting_To_Download

11 Sep 2019 06:17:05,477 INFO : Checking status of job 5d78f28dd6f7f500136ab13e

11 Sep 2019 06:17:05,724 INFO : Status: Waiting_To_Download

11 Sep 2019 06:17:25,725 INFO : Checking status of job 5d78f28dd6f7f500136ab13e

11 Sep 2019 06:17:25,974 INFO : Status: Waiting_To_Download

11 Sep 2019 06:17:45,975 INFO : Checking status of job 5d78f28dd6f7f500136ab13e

11 Sep 2019 06:17:46,228 INFO : Status: Waiting_To_Download

11 Sep 2019 06:18:06,229 INFO : Checking status of job 5d78f28dd6f7f500136ab13e

11 Sep 2019 06:18:06,477 INFO : Status: Waiting_To_Download

11 Sep 2019 06:18:26,478 INFO : Checking status of job 5d78f28dd6f7f500136ab13e

11 Sep 2019 06:18:26,728 INFO : Status: Waiting_To_Download

11 Sep 2019 06:18:46,729 INFO : Checking status of job 5d78f28dd6f7f500136ab13e

11 Sep 2019 06:18:47,206 INFO : Status: Waiting_To_Download

11 Sep 2019 06:19:07,207 INFO : Checking status of job 5d78f28dd6f7f500136ab13e

11 Sep 2019 06:19:07,531 INFO : Status: Waiting_To_Download

11 Sep 2019 06:19:27,531 INFO : Checking status of job 5d78f28dd6f7f500136ab13e

11 Sep 2019 06:19:27,782 INFO : Status: Waiting_To_Download

11 Sep 2019 06:19:47,782 INFO : Checking status of job 5d78f28dd6f7f500136ab13e

11 Sep 2019 06:19:48,029 INFO : Status: Waiting_To_Download

11 Sep 2019 06:20:08,029 INFO : Checking status of job 5d78f28dd6f7f500136ab13e

11 Sep 2019 06:20:08,280 INFO : Status: Waiting_To_Download

11 Sep 2019 06:20:28,280 INFO : Checking status of job 5d78f28dd6f7f500136ab13e

11 Sep 2019 06:20:28,605 INFO : Status: Waiting_To_Download

11 Sep 2019 06:20:48,605 INFO : Checking status of job 5d78f28dd6f7f500136ab13e

11 Sep 2019 06:20:48,851 INFO : Status: Waiting_To_Download

11 Sep 2019 06:21:08,852 INFO : Checking status of job 5d78f28dd6f7f500136ab13e

11 Sep 2019 06:21:09,106 INFO : Status: Waiting_To_Download

11 Sep 2019 06:21:29,107 INFO : Checking status of job 5d78f28dd6f7f500136ab13e

11 Sep 2019 06:21:29,360 INFO : Status: Waiting_To_Download

11 Sep 2019 06:21:49,360 INFO : Checking status of job 5d78f28dd6f7f500136ab13e

11 Sep 2019 06:21:49,689 INFO : Status: Waiting_To_Download

11 Sep 2019 06:22:09,689 INFO : Checking status of job 5d78f28dd6f7f500136ab13e

11 Sep 2019 06:22:09,937 INFO : Status: Waiting_To_Download

11 Sep 2019 06:22:29,938 INFO : Checking status of job 5d78f28dd6f7f500136ab13e

11 Sep 2019 06:22:30,269 INFO : Status: Waiting_To_Download

11 Sep 2019 06:22:50,270 INFO : Checking status of job 5d78f28dd6f7f500136ab13e

11 Sep 2019 06:22:50,525 INFO : Status: Waiting_To_Download

11 Sep 2019 06:23:10,526 INFO : Checking status of job 5d78f28dd6f7f500136ab13e

11 Sep 2019 06:23:10,772 INFO : Status: Waiting_To_Download

11 Sep 2019 06:23:30,773 INFO : Checking status of job 5d78f28dd6f7f500136ab13e

11 Sep 2019 06:23:31,021 INFO : Status: Waiting_To_Download

11 Sep 2019 06:23:51,021 INFO : Checking status of job 5d78f28dd6f7f500136ab13e

11 Sep 2019 06:23:51,346 INFO : Status: Waiting_To_Download

11 Sep 2019 06:24:11,347 INFO : Checking status of job 5d78f28dd6f7f500136ab13e

11 Sep 2019 06:24:11,607 INFO : Status: Waiting_To_Download

11 Sep 2019 06:24:31,607 INFO : Checking status of job 5d78f28dd6f7f500136ab13e

11 Sep 2019 06:24:31,861 INFO : Status: Waiting_To_Download

11 Sep 2019 06:24:51,862 INFO : Checking status of job 5d78f28dd6f7f500136ab13e

11 Sep 2019 06:24:52,107 INFO : Status: Waiting_To_Download

11 Sep 2019 06:25:12,108 INFO : Checking status of job 5d78f28dd6f7f500136ab13e

11 Sep 2019 06:25:12,436 INFO : Status: Waiting_To_Download

11 Sep 2019 06:25:32,436 INFO : Checking status of job 5d78f28dd6f7f500136ab13e

11 Sep 2019 06:25:32,684 INFO : Status: Waiting_To_Download

11 Sep 2019 06:25:52,685 INFO : Checking status of job 5d78f28dd6f7f500136ab13e

11 Sep 2019 06:25:52,936 INFO : Status: Waiting_To_Download

11 Sep 2019 06:26:12,936 INFO : Checking status of job 5d78f28dd6f7f500136ab13e

11 Sep 2019 06:26:13,188 INFO : Status: Waiting_To_Download

11 Sep 2019 06:26:33,188 INFO : Checking status of job 5d78f28dd6f7f500136ab13e

11 Sep 2019 06:26:33,513 INFO : Status: Waiting_To_Download

11 Sep 2019 06:26:53,514 INFO : Checking status of job 5d78f28dd6f7f500136ab13e

11 Sep 2019 06:26:53,851 INFO : Status: Waiting_To_Download

11 Sep 2019 06:27:13,852 INFO : Checking status of job 5d78f28dd6f7f500136ab13e

11 Sep 2019 06:27:14,114 INFO : Status: Waiting_To_Download

11 Sep 2019 06:27:34,115 INFO : Checking status of job 5d78f28dd6f7f500136ab13e

11 Sep 2019 06:27:34,367 INFO : Status: Waiting_To_Download

11 Sep 2019 06:27:54,368 INFO : Checking status of job 5d78f28dd6f7f500136ab13e

11 Sep 2019 06:27:54,695 INFO : Status: Waiting_To_Download

11 Sep 2019 06:28:14,695 INFO : Checking status of job 5d78f28dd6f7f500136ab13e

11 Sep 2019 06:28:14,948 INFO : Status: Waiting_To_Download

11 Sep 2019 06:28:34,948 INFO : Checking status of job 5d78f28dd6f7f500136ab13e

11 Sep 2019 06:28:35,203 INFO : Status: Waiting_To_Download

11 Sep 2019 06:28:55,203 INFO : Checking status of job 5d78f28dd6f7f500136ab13e

11 Sep 2019 06:28:55,454 INFO : Status: Waiting_To_Download

11 Sep 2019 06:29:15,455 INFO : Checking status of job 5d78f28dd6f7f500136ab13e

11 Sep 2019 06:29:15,704 INFO : Status: Waiting_To_Download

11 Sep 2019 06:29:35,705 INFO : Checking status of job 5d78f28dd6f7f500136ab13e

11 Sep 2019 06:29:35,956 INFO : Status: Waiting_To_Download

11 Sep 2019 06:29:55,957 INFO : Checking status of job 5d78f28dd6f7f500136ab13e

11 Sep 2019 06:29:56,280 INFO : Status: Waiting_To_Download

11 Sep 2019 06:30:16,281 INFO : Checking status of job 5d78f28dd6f7f500136ab13e

11 Sep 2019 06:30:16,531 INFO : Status: Waiting_To_Download

11 Sep 2019 06:30:36,531 INFO : Checking status of job 5d78f28dd6f7f500136ab13e

11 Sep 2019 06:30:36,781 INFO : Status: Waiting_To_Download

11 Sep 2019 06:30:56,782 INFO : Checking status of job 5d78f28dd6f7f500136ab13e

11 Sep 2019 06:30:57,034 INFO : Status: Waiting_To_Download

11 Sep 2019 06:31:17,035 INFO : Checking status of job 5d78f28dd6f7f500136ab13e

11 Sep 2019 06:31:17,286 INFO : Status: Waiting_To_Download

11 Sep 2019 06:31:37,286 INFO : Checking status of job 5d78f28dd6f7f500136ab13e

11 Sep 2019 06:31:37,537 INFO : Status: Waiting_To_Download

11 Sep 2019 06:31:57,538 INFO : Checking status of job 5d78f28dd6f7f500136ab13e

11 Sep 2019 06:31:57,788 INFO : Status: Waiting_To_Download

11 Sep 2019 06:32:17,788 INFO : Checking status of job 5d78f28dd6f7f500136ab13e

11 Sep 2019 06:32:18,038 INFO : Status: Waiting_To_Download

11 Sep 2019 06:32:38,039 INFO : Checking status of job 5d78f28dd6f7f500136ab13e

11 Sep 2019 06:32:38,363 INFO : Status: Waiting_To_Download

11 Sep 2019 06:32:58,363 INFO : Checking status of job 5d78f28dd6f7f500136ab13e

11 Sep 2019 06:32:58,613 INFO : Status: Waiting_To_Download

11 Sep 2019 06:33:18,614 INFO : Checking status of job 5d78f28dd6f7f500136ab13e

11 Sep 2019 06:33:18,945 INFO : Status: Waiting_To_Download

11 Sep 2019 06:33:38,946 INFO : Checking status of job 5d78f28dd6f7f500136ab13e

11 Sep 2019 06:33:39,202 INFO : Status: Waiting_To_Download

11 Sep 2019 06:33:59,203 INFO : Checking status of job 5d78f28dd6f7f500136ab13e

11 Sep 2019 06:33:59,453 INFO : Status: Waiting_To_Download

11 Sep 2019 06:34:19,453 INFO : Checking status of job 5d78f28dd6f7f500136ab13e

11 Sep 2019 06:34:19,710 INFO : Status: Waiting_To_Download

11 Sep 2019 06:34:39,710 INFO : Checking status of job 5d78f28dd6f7f500136ab13e

11 Sep 2019 06:34:39,964 INFO : Status: Waiting_To_Download

11 Sep 2019 06:34:59,964 INFO : Checking status of job 5d78f28dd6f7f500136ab13e

11 Sep 2019 06:35:00,216 INFO : Status: Waiting_To_Download

11 Sep 2019 06:35:20,216 INFO : Checking status of job 5d78f28dd6f7f500136ab13e

11 Sep 2019 06:35:20,472 INFO : Status: Waiting_To_Download

11 Sep 2019 06:35:40,472 INFO : Checking status of job 5d78f28dd6f7f500136ab13e

11 Sep 2019 06:35:40,724 INFO : Status: Waiting_To_Download

11 Sep 2019 06:36:00,725 INFO : Checking status of job 5d78f28dd6f7f500136ab13e

11 Sep 2019 06:36:01,057 INFO : Status: Waiting_To_Download

11 Sep 2019 06:36:21,057 INFO : Checking status of job 5d78f28dd6f7f500136ab13e

11 Sep 2019 06:36:21,309 INFO : Status: Waiting_To_Download

11 Sep 2019 06:36:41,310 INFO : Checking status of job 5d78f28dd6f7f500136ab13e

11 Sep 2019 06:36:41,563 INFO : Status: Waiting_To_Download

11 Sep 2019 06:37:01,564 INFO : Checking status of job 5d78f28dd6f7f500136ab13e

11 Sep 2019 06:37:01,812 INFO : Status: Waiting_To_Download

11 Sep 2019 06:37:21,812 INFO : Checking status of job 5d78f28dd6f7f500136ab13e

11 Sep 2019 06:37:22,140 INFO : Status: Waiting_To_Download

11 Sep 2019 06:37:42,140 INFO : Checking status of job 5d78f28dd6f7f500136ab13e

11 Sep 2019 06:37:42,387 INFO : Status: Waiting_To_Download

11 Sep 2019 06:38:02,388 INFO : Checking status of job 5d78f28dd6f7f500136ab13e

11 Sep 2019 06:38:02,637 INFO : Status: Waiting_To_Download

11 Sep 2019 06:38:22,637 INFO : Checking status of job 5d78f28dd6f7f500136ab13e

11 Sep 2019 06:38:22,885 INFO : Status: Waiting_To_Download

11 Sep 2019 06:38:42,886 INFO : Checking status of job 5d78f28dd6f7f500136ab13e

11 Sep 2019 06:38:43,278 INFO : Status: Waiting_To_Download

11 Sep 2019 06:39:03,279 INFO : Checking status of job 5d78f28dd6f7f500136ab13e

11 Sep 2019 06:39:03,530 INFO : Status: Waiting_To_Download

11 Sep 2019 06:39:23,530 INFO : Checking status of job 5d78f28dd6f7f500136ab13e

11 Sep 2019 06:39:23,859 INFO : Status: Waiting_To_Download

11 Sep 2019 06:39:43,860 INFO : Checking status of job 5d78f28dd6f7f500136ab13e

11 Sep 2019 06:39:44,113 INFO : Status: Waiting_To_Download

11 Sep 2019 06:40:04,113 INFO : Checking status of job 5d78f28dd6f7f500136ab13e

11 Sep 2019 06:40:04,364 INFO : Status: Waiting_To_Download

11 Sep 2019 06:40:24,364 INFO : Checking status of job 5d78f28dd6f7f500136ab13e

11 Sep 2019 06:40:24,616 INFO : Status: Waiting_To_Download

11 Sep 2019 06:40:44,617 INFO : Checking status of job 5d78f28dd6f7f500136ab13e

11 Sep 2019 06:40:44,942 INFO : Status: Waiting_To_Download

11 Sep 2019 06:41:04,943 INFO : Checking status of job 5d78f28dd6f7f500136ab13e

11 Sep 2019 06:41:05,195 INFO : Status: Waiting_To_Download

11 Sep 2019 06:41:25,195 INFO : Checking status of job 5d78f28dd6f7f500136ab13e

11 Sep 2019 06:41:25,442 INFO : Status: Waiting_To_Download

11 Sep 2019 06:41:45,443 INFO : Checking status of job 5d78f28dd6f7f500136ab13e

11 Sep 2019 06:41:45,692 INFO : Status: Waiting_To_Download

11 Sep 2019 06:42:05,692 INFO : Checking status of job 5d78f28dd6f7f500136ab13e

11 Sep 2019 06:42:06,017 INFO : Status: Waiting_To_Download

11 Sep 2019 06:42:26,017 INFO : Checking status of job 5d78f28dd6f7f500136ab13e

11 Sep 2019 06:42:26,660 INFO : Status: Waiting_To_Download

11 Sep 2019 06:42:26,661 ERROR: Exceeded 30 minute wait time.

11 Sep 2019 06:42:27,237 INFO : Finished running LINCS PSP pipeline.

11 Sep 2019 06:42:27,237 INFO : Successfully completed task 'org.labkey.lincs.psp.LincsPspTask'

PanoramaWeb

PanoramaWeb

Running LINCS pipeline on PSP for: LINCS_GCP_Plate81_annotated_minimized_2019-09-11_09-07-54

Job Status

Log File