Re-running LINCS pipeline on PSP for: LINCS_GCP_Plate80_annotated_minimized_2019-08-14

Re-running LINCS pipeline on PSP for: LINCS_GCP_Plate80_annotated_minimized_2019-08-14_12-13-02

GCP

Job Status

Created:

2019-08-14 22:15:05

Modified:

2020-06-01 16:36:20

Email:

vsharma@uw.edu

Status:

ERROR

Info:

Description:

Re-running LINCS pipeline on PSP for: LINCS_GCP_Plate80_annotated_minimized_2019-08-14_12-13-02

File Path:

/data/labkey/files/LINCS/GCP/@files/LincsPSP_rerun_LINCS_GCP_Plate80_annotated_minimized_2019-08-14_12-13-02_2019-08-14_22-15-04.log

Files:

LincsPSP_rerun_LINCS_GCP_Plate80_annotated_minimized_2019-08-14_12-13-02_2019-08-14_22-15-04.log

Join job:

Status	Description

Split jobs:

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Log File

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14 Aug 2019 22:15:05,427 INFO : Re-running LINCS pipeline on PSP for:  LINCS_GCP_Plate80_annotated_minimized_2019-08-14_12-13-02

14 Aug 2019 22:15:05,428 INFO : =======================================

14 Aug 2019 22:17:08,208 INFO : Starting to run task 'org.labkey.lincs.psp.LincsPspTask' at location 'webserver-high-priority'

14 Aug 2019 22:17:08,208 INFO : Running LINCS PSP pipeline for LINCS_GCP_Plate80_annotated_minimized_2019-08-14_12-13-02

14 Aug 2019 22:17:08,209 INFO : Resubmitting job for runId: 72750, name: LINCS_GCP_Plate80_annotated_minimized_2019-08-14_12-13-02

14 Aug 2019 22:17:08,209 INFO : Old job details:

14 Aug 2019 22:17:08,209 INFO : Id: 150

14 Aug 2019 22:17:08,210 INFO : Pipeline job Id: 73266

14 Aug 2019 22:17:08,210 INFO : Run Id: 72750

14 Aug 2019 22:17:08,210 INFO : PSP Job Id: 5d544056544166e8be584f02

14 Aug 2019 22:17:08,211 INFO : PSP Job name: LINCS_GCP_Plate80_annotated_minimized_2019-08-14_12-13-02

14 Aug 2019 22:17:08,211 INFO : PSP Job status: Waiting_To_Download

14 Aug 2019 22:17:08,211 INFO : JSON: {"level 4":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate80_annotated_minimized_2019-08-14_12-13-02_LVL4.gct"}},"assay":"GCP","created":"2019-08-14T17:09:42.887Z","name":"LINCS_GCP_Plate80_annotated_minimized_2019-08-14_12-13-02","id":"5d544056544166e8be584f02","last_modified":"2019-08-14T17:09:42.888Z","config":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate80_annotated_minimized_2019-08-14_12-13-02.cfg"}},"level 2":{"panorama":{"method":"GET","url":"https://panoramaweb.org/lincs/LINCS/GCP/runGCTReportApi.view?runId=72750&remote=true&reportName=GCT%20File%20GCP"}},"status":"Waiting_To_Download","level 3":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate80_annotated_minimized_2019-08-14_12-13-02_LVL3.gct"}}}

14 Aug 2019 22:17:08,212 INFO : Resubmitting...

14 Aug 2019 22:17:08,214 INFO : Looking for existing job with name LINCS_GCP_Plate80_annotated_minimized_2019-08-14_12-13-02

14 Aug 2019 22:17:08,323 INFO : Job with name LINCS_GCP_Plate80_annotated_minimized_2019-08-14_12-13-02exists.

14 Aug 2019 22:17:08,323 INFO : Looking for existing job with name LINCS_GCP_Plate80_annotated_minimized_2019-08-14_12-13-02_2

14 Aug 2019 22:17:08,429 INFO : PSP job name: LINCS_GCP_Plate80_annotated_minimized_2019-08-14_12-13-02_2

14 Aug 2019 22:17:08,430 INFO : Sending JSON:

14 Aug 2019 22:17:08,431 INFO : {
  "level 4": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate80_annotated_minimized_2019-08-14_12-13-02_LVL4.gct"
  }},
  "assay": "GCP",
  "name": "LINCS_GCP_Plate80_annotated_minimized_2019-08-14_12-13-02_2",
  "config": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate80_annotated_minimized_2019-08-14_12-13-02.cfg"
  }},
  "level 2": {"panorama": {
    "method": "GET",
    "url": "https://panoramaweb.org/lincs/LINCS/GCP/runGCTReportApi.view?runId=72750&remote=true&reportName=GCT%20File%20GCP"
  }},
  "level 3": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate80_annotated_minimized_2019-08-14_12-13-02_LVL3.gct"
  }}
}

14 Aug 2019 22:17:08,431 INFO : Sending POST request to https://api.clue.io/api/psp

14 Aug 2019 22:17:08,631 INFO : Response code - 200

14 Aug 2019 22:17:08,632 INFO : Response from server: {"name":"LINCS_GCP_Plate80_annotated_minimized_2019-08-14_12-13-02_2","assay":"GCP","status":"Waiting_To_Download","id":"5d54ead4544166e8be584f57","created":"2019-08-15T05:17:08.498Z","last_modified":"2019-08-15T05:17:08.498Z","level 2":{"panorama":{"method":"GET","url":"https://panoramaweb.org/lincs/LINCS/GCP/runGCTReportApi.view?runId=72750&remote=true&reportName=GCT%20File%20GCP"}},"level 3":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate80_annotated_minimized_2019-08-14_12-13-02_LVL3.gct"}},"level 4":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate80_annotated_minimized_2019-08-14_12-13-02_LVL4.gct"}},"config":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate80_annotated_minimized_2019-08-14_12-13-02.cfg"}}}

14 Aug 2019 22:17:08,632 INFO : Sent POST request to https://api.clue.io/api/psp

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14 Aug 2019 22:47:52,274 ERROR: Exceeded 30 minute wait time.

14 Aug 2019 22:47:53,088 INFO : Finished running LINCS PSP pipeline.

14 Aug 2019 22:47:53,088 INFO : Successfully completed task 'org.labkey.lincs.psp.LincsPspTask'

PanoramaWeb

PanoramaWeb

Re-running LINCS pipeline on PSP for: LINCS_GCP_Plate80_annotated_minimized_2019-08-14_12-13-02

Job Status

Log File