Re-running LINCS pipeline on PSP for: LINCS_GCP_Plate79_annotated_minimized_2019-08-14

Re-running LINCS pipeline on PSP for: LINCS_GCP_Plate79_annotated_minimized_2019-08-14_12-08-47

GCP

Job Status

Created:

2019-08-14 15:24:58

Modified:

2020-06-01 16:36:20

Email:

vsharma@uw.edu

Status:

ERROR

Info:

Description:

Re-running LINCS pipeline on PSP for: LINCS_GCP_Plate79_annotated_minimized_2019-08-14_12-08-47

File Path:

/data/labkey/files/LINCS/GCP/@files/LincsPSP_rerun_LINCS_GCP_Plate79_annotated_minimized_2019-08-14_12-08-47_2019-08-14_15-24-57.log

Files:

LincsPSP_rerun_LINCS_GCP_Plate79_annotated_minimized_2019-08-14_12-08-47_2019-08-14_15-24-57.log

Join job:

Status	Description

Split jobs:

Status	Description

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Log File

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14 Aug 2019 15:24:58,143 INFO : Re-running LINCS pipeline on PSP for:  LINCS_GCP_Plate79_annotated_minimized_2019-08-14_12-08-47

14 Aug 2019 15:24:58,143 INFO : =======================================

14 Aug 2019 15:24:58,620 INFO : Starting to run task 'org.labkey.lincs.psp.LincsPspTask' at location 'webserver-high-priority'

14 Aug 2019 15:24:58,621 INFO : Running LINCS PSP pipeline for LINCS_GCP_Plate79_annotated_minimized_2019-08-14_12-08-47

14 Aug 2019 15:24:58,621 INFO : Resubmitting job for runId: 72749, name: LINCS_GCP_Plate79_annotated_minimized_2019-08-14_12-08-47

14 Aug 2019 15:24:58,622 INFO : Old job details:

14 Aug 2019 15:24:58,622 INFO : Id: 149

14 Aug 2019 15:24:58,622 INFO : Pipeline job Id: 73265

14 Aug 2019 15:24:58,622 INFO : Run Id: 72749

14 Aug 2019 15:24:58,623 INFO : PSP Job Id: 5d54391f544166e8be584efe

14 Aug 2019 15:24:58,623 INFO : PSP Job name: LINCS_GCP_Plate79_annotated_minimized_2019-08-14_12-08-47

14 Aug 2019 15:24:58,623 INFO : PSP Job status: Waiting_To_Download

14 Aug 2019 15:24:58,624 INFO : JSON: {"level 4":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate79_annotated_minimized_2019-08-14_12-08-47_LVL4.gct"}},"assay":"GCP","created":"2019-08-14T16:38:55.586Z","name":"LINCS_GCP_Plate79_annotated_minimized_2019-08-14_12-08-47","id":"5d54391f544166e8be584efe","last_modified":"2019-08-14T16:38:55.586Z","config":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate79_annotated_minimized_2019-08-14_12-08-47.cfg"}},"level 2":{"panorama":{"method":"GET","url":"https://panoramaweb.org/lincs/LINCS/GCP/runGCTReportApi.view?runId=72749&remote=true&reportName=GCT%20File%20GCP"}},"status":"Waiting_To_Download","level 3":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate79_annotated_minimized_2019-08-14_12-08-47_LVL3.gct"}}}

14 Aug 2019 15:24:58,624 INFO : Resubmitting...

14 Aug 2019 15:24:58,627 INFO : Looking for existing job with name LINCS_GCP_Plate79_annotated_minimized_2019-08-14_12-08-47

14 Aug 2019 15:24:59,072 INFO : Job with name LINCS_GCP_Plate79_annotated_minimized_2019-08-14_12-08-47exists.

14 Aug 2019 15:24:59,072 INFO : Looking for existing job with name LINCS_GCP_Plate79_annotated_minimized_2019-08-14_12-08-47_2

14 Aug 2019 15:24:59,189 INFO : PSP job name: LINCS_GCP_Plate79_annotated_minimized_2019-08-14_12-08-47_2

14 Aug 2019 15:24:59,190 INFO : Sending JSON:

14 Aug 2019 15:24:59,191 INFO : {
  "level 4": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate79_annotated_minimized_2019-08-14_12-08-47_LVL4.gct"
  }},
  "assay": "GCP",
  "name": "LINCS_GCP_Plate79_annotated_minimized_2019-08-14_12-08-47_2",
  "config": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate79_annotated_minimized_2019-08-14_12-08-47.cfg"
  }},
  "level 2": {"panorama": {
    "method": "GET",
    "url": "https://panoramaweb.org/lincs/LINCS/GCP/runGCTReportApi.view?runId=72749&remote=true&reportName=GCT%20File%20GCP"
  }},
  "level 3": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate79_annotated_minimized_2019-08-14_12-08-47_LVL3.gct"
  }}
}

14 Aug 2019 15:24:59,191 INFO : Sending POST request to https://api.clue.io/api/psp

14 Aug 2019 15:24:59,513 INFO : Response code - 200

14 Aug 2019 15:24:59,514 INFO : Response from server: {"name":"LINCS_GCP_Plate79_annotated_minimized_2019-08-14_12-08-47_2","assay":"GCP","status":"Waiting_To_Download","id":"5d548a3b544166e8be584f38","created":"2019-08-14T22:24:59.262Z","last_modified":"2019-08-14T22:24:59.263Z","level 2":{"panorama":{"method":"GET","url":"https://panoramaweb.org/lincs/LINCS/GCP/runGCTReportApi.view?runId=72749&remote=true&reportName=GCT%20File%20GCP"}},"level 3":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate79_annotated_minimized_2019-08-14_12-08-47_LVL3.gct"}},"level 4":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate79_annotated_minimized_2019-08-14_12-08-47_LVL4.gct"}},"config":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate79_annotated_minimized_2019-08-14_12-08-47.cfg"}}}

14 Aug 2019 15:24:59,514 INFO : Sent POST request to https://api.clue.io/api/psp

14 Aug 2019 15:24:59,516 INFO : Checking status of job 5d548a3b544166e8be584f38

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14 Aug 2019 15:55:50,992 ERROR: Exceeded 30 minute wait time.

14 Aug 2019 15:55:51,139 INFO : Finished running LINCS PSP pipeline.

14 Aug 2019 15:55:51,139 INFO : Successfully completed task 'org.labkey.lincs.psp.LincsPspTask'

PanoramaWeb

PanoramaWeb

Re-running LINCS pipeline on PSP for: LINCS_GCP_Plate79_annotated_minimized_2019-08-14_12-08-47

Job Status

Log File