Running LINCS pipeline on PSP for: LINCS_GCP_Plate79_annotated_minimized_2019-08-14_12-08-47

GCP

Job Status

Created: 2019-08-14 09:37:51
Modified: 2020-06-01 16:36:20
Email: karen@broadinstitute.org
Status: ERROR
Info:
Description: Running LINCS pipeline on PSP for: LINCS_GCP_Plate79_annotated_minimized_2019-08-14_12-08-47
File Path: /data/labkey/files/LINCS/GCP/@files/LincsPSP_LINCS_GCP_Plate79_annotated_minimized_2019-08-14_12-08-47_2019-08-14_09-37-51.log
Files: LincsPSP_LINCS_GCP_Plate79_annotated_minimized_2019-08-14_12-08-47_2019-08-14_09-37-51.log

Log File


14 Aug 2019 09:37:51,479 INFO : Running LINCS pipeline on PSP for: LINCS_GCP_Plate79_annotated_minimized_2019-08-14_12-08-47
14 Aug 2019 09:37:51,479 INFO : =======================================
14 Aug 2019 09:38:55,265 INFO : Starting to run task 'org.labkey.lincs.psp.LincsPspTask' at location 'webserver-high-priority'
14 Aug 2019 09:38:55,266 INFO : Running LINCS PSP pipeline for LINCS_GCP_Plate79_annotated_minimized_2019-08-14_12-08-47
14 Aug 2019 09:38:55,266 INFO : Submitting job for runId: 72749, name: LINCS_GCP_Plate79_annotated_minimized_2019-08-14_12-08-47
14 Aug 2019 09:38:55,267 INFO : Looking for existing job with name LINCS_GCP_Plate79_annotated_minimized_2019-08-14_12-08-47
14 Aug 2019 09:38:55,515 INFO : PSP job name: LINCS_GCP_Plate79_annotated_minimized_2019-08-14_12-08-47
14 Aug 2019 09:38:55,516 INFO : Sending JSON:
14 Aug 2019 09:38:55,516 INFO : { "level 4": {"panorama": { "method": "PUT", "url": "https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate79_annotated_minimized_2019-08-14_12-08-47_LVL4.gct" }}, "assay": "GCP", "name": "LINCS_GCP_Plate79_annotated_minimized_2019-08-14_12-08-47", "config": {"panorama": { "method": "PUT", "url": "https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate79_annotated_minimized_2019-08-14_12-08-47.cfg" }}, "level 2": {"panorama": { "method": "GET", "url": "https://panoramaweb.org/lincs/LINCS/GCP/runGCTReportApi.view?runId=72749&remote=true&reportName=GCT%20File%20GCP" }}, "level 3": {"panorama": { "method": "PUT", "url": "https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate79_annotated_minimized_2019-08-14_12-08-47_LVL3.gct" }} }
14 Aug 2019 09:38:55,517 INFO : Sending POST request to https://api.clue.io/api/psp
14 Aug 2019 09:38:55,725 INFO : Response code - 200
14 Aug 2019 09:38:55,725 INFO : Response from server: {"name":"LINCS_GCP_Plate79_annotated_minimized_2019-08-14_12-08-47","assay":"GCP","status":"Waiting_To_Download","id":"5d54391f544166e8be584efe","created":"2019-08-14T16:38:55.586Z","last_modified":"2019-08-14T16:38:55.586Z","level 2":{"panorama":{"method":"GET","url":"https://panoramaweb.org/lincs/LINCS/GCP/runGCTReportApi.view?runId=72749&remote=true&reportName=GCT%20File%20GCP"}},"level 3":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate79_annotated_minimized_2019-08-14_12-08-47_LVL3.gct"}},"level 4":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate79_annotated_minimized_2019-08-14_12-08-47_LVL4.gct"}},"config":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate79_annotated_minimized_2019-08-14_12-08-47.cfg"}}}
14 Aug 2019 09:38:55,726 INFO : Sent POST request to https://api.clue.io/api/psp
14 Aug 2019 09:38:55,728 INFO : Checking status of job 5d54391f544166e8be584efe
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14 Aug 2019 10:09:40,392 ERROR: Exceeded 30 minute wait time.
14 Aug 2019 10:09:42,364 INFO : Finished running LINCS PSP pipeline.
14 Aug 2019 10:09:42,364 INFO : Successfully completed task 'org.labkey.lincs.psp.LincsPspTask'