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Running LINCS pipeline on PSP for: LINCS_GCP_Plate71a_annotated_minimized_2019-06-10_18-10-31

GCP

Job Status

Created: 2019-06-10 15:11:08
Modified: 2020-06-01 16:36:20
Email: jmulla@broadinstitute.org
Status: COMPLETE
Info:
Description: Running LINCS pipeline on PSP for: LINCS_GCP_Plate71a_annotated_minimized_2019-06-10_18-10-31
File Path: /data/labkey/files/LINCS/GCP/@files/LincsPSP_LINCS_GCP_Plate71a_annotated_minimized_2019-06-10_18-10-31_2019-06-10_15-11-07.log
Files: LincsPSP_LINCS_GCP_Plate71a_annotated_minimized_2019-06-10_18-10-31_2019-06-10_15-11-07.log
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Log File


10 Jun 2019 15:11:07,853 INFO : Running LINCS pipeline on PSP for:  LINCS_GCP_Plate71a_annotated_minimized_2019-06-10_18-10-31
10 Jun 2019 15:11:07,853 INFO : =======================================
10 Jun 2019 15:11:09,115 INFO : Starting to run task 'org.labkey.lincs.psp.LincsPspTask' at location 'webserver-high-priority'
10 Jun 2019 15:11:09,115 INFO : Running LINCS PSP pipeline for LINCS_GCP_Plate71a_annotated_minimized_2019-06-10_18-10-31
10 Jun 2019 15:11:09,116 INFO : Submitting job for runId: 67804, name: LINCS_GCP_Plate71a_annotated_minimized_2019-06-10_18-10-31
10 Jun 2019 15:11:09,118 INFO : Looking for existing job with name LINCS_GCP_Plate71a_annotated_minimized_2019-06-10_18-10-31
10 Jun 2019 15:11:09,467 INFO : PSP job name: LINCS_GCP_Plate71a_annotated_minimized_2019-06-10_18-10-31
10 Jun 2019 15:11:09,468 INFO : Sending JSON:
10 Jun 2019 15:11:09,468 INFO : {
  "level 4": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate71a_annotated_minimized_2019-06-10_18-10-31_LVL4.gct"
  }},
  "assay": "GCP",
  "name": "LINCS_GCP_Plate71a_annotated_minimized_2019-06-10_18-10-31",
  "config": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate71a_annotated_minimized_2019-06-10_18-10-31.cfg"
  }},
  "level 2": {"panorama": {
    "method": "GET",
    "url": "https://panoramaweb.org/lincs/LINCS/GCP/runGCTReportApi.view?runId=67804&remote=true&reportName=GCT%20File%20GCP"
  }},
  "level 3": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate71a_annotated_minimized_2019-06-10_18-10-31_LVL3.gct"
  }}
}
10 Jun 2019 15:11:09,469 INFO : Sending POST request to https://api.clue.io/api/psp
10 Jun 2019 15:11:09,683 INFO : Response code - 200
10 Jun 2019 15:11:09,684 INFO : Response from server: {"name":"LINCS_GCP_Plate71a_annotated_minimized_2019-06-10_18-10-31","assay":"GCP","status":"Waiting_To_Download","id":"5cfed57d344c151e38c98f02","created":"2019-06-10T22:11:09.531Z","last_modified":"2019-06-10T22:11:09.531Z","level 2":{"panorama":{"method":"GET","url":"https://panoramaweb.org/lincs/LINCS/GCP/runGCTReportApi.view?runId=67804&remote=true&reportName=GCT%20File%20GCP"}},"level 3":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate71a_annotated_minimized_2019-06-10_18-10-31_LVL3.gct"}},"level 4":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate71a_annotated_minimized_2019-06-10_18-10-31_LVL4.gct"}},"config":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate71a_annotated_minimized_2019-06-10_18-10-31.cfg"}}}
10 Jun 2019 15:11:09,684 INFO : Sent POST request to https://api.clue.io/api/psp
10 Jun 2019 15:11:09,686 INFO : Checking status of job 5cfed57d344c151e38c98f02
10 Jun 2019 15:11:09,792 INFO : Status: Waiting_To_Download
10 Jun 2019 15:11:29,793 INFO : Checking status of job 5cfed57d344c151e38c98f02
10 Jun 2019 15:11:30,042 INFO : Status: created LVL2 GCT
10 Jun 2019 15:11:50,043 INFO : Checking status of job 5cfed57d344c151e38c98f02
10 Jun 2019 15:11:50,292 INFO : Status: created LVL2 GCT
10 Jun 2019 15:12:10,293 INFO : Checking status of job 5cfed57d344c151e38c98f02
10 Jun 2019 15:12:10,541 INFO : Status: created LVL2 GCT
10 Jun 2019 15:12:30,542 INFO : Checking status of job 5cfed57d344c151e38c98f02
10 Jun 2019 15:12:30,824 INFO : Status: created LVL2 GCT
10 Jun 2019 15:12:50,825 INFO : Checking status of job 5cfed57d344c151e38c98f02
10 Jun 2019 15:12:51,074 INFO : Status: created LVL2 GCT
10 Jun 2019 15:13:11,074 INFO : Checking status of job 5cfed57d344c151e38c98f02
10 Jun 2019 15:13:11,327 INFO : Status: created LVL2 GCT
10 Jun 2019 15:13:31,328 INFO : Checking status of job 5cfed57d344c151e38c98f02
10 Jun 2019 15:13:31,578 INFO : Status: created LVL2 GCT
10 Jun 2019 15:13:51,578 INFO : Checking status of job 5cfed57d344c151e38c98f02
10 Jun 2019 15:13:51,849 INFO : Status: created LVL2 GCT
10 Jun 2019 15:14:11,850 INFO : Checking status of job 5cfed57d344c151e38c98f02
10 Jun 2019 15:14:12,096 INFO : Status: created LVL 3 GCT
10 Jun 2019 15:14:32,096 INFO : Checking status of job 5cfed57d344c151e38c98f02
10 Jun 2019 15:14:32,347 INFO : Status: POUR : succeeded in uploading all GCTs to Panorama
10 Jun 2019 15:14:32,348 INFO : PSP job completed with status: POUR : succeeded in uploading all GCTs to Panorama
10 Jun 2019 15:14:32,348 INFO : Finished running LINCS PSP pipeline.
10 Jun 2019 15:14:32,348 INFO : Successfully completed task 'org.labkey.lincs.psp.LincsPspTask'