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Running LINCS pipeline on PSP for: LINCS_GCP_Plate30_annotated_minimized_2018-05-07_16-32-39

GCP

Job Status

Created: 2019-06-09 11:22:00
Modified: 2020-06-01 16:36:20
Email: vsharma@uw.edu
Status: COMPLETE
Info:
Description: Running LINCS pipeline on PSP for: LINCS_GCP_Plate30_annotated_minimized_2018-05-07_16-32-39
File Path: /data/labkey/files/LINCS/GCP/@files/LincsPSP_LINCS_GCP_Plate30_annotated_minimized_2018-05-07_16-32-39_2019-06-09_11-21-59.log
Files: LincsPSP_LINCS_GCP_Plate30_annotated_minimized_2018-05-07_16-32-39_2019-06-09_11-21-59.log
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Log File


09 Jun 2019 11:21:59,955 INFO : Running LINCS pipeline on PSP for:  LINCS_GCP_Plate30_annotated_minimized_2018-05-07_16-32-39
09 Jun 2019 11:21:59,955 INFO : =======================================
09 Jun 2019 11:32:02,875 INFO : Starting to run task 'org.labkey.lincs.psp.LincsPspTask' at location 'webserver-high-priority'
09 Jun 2019 11:32:02,875 INFO : Running LINCS PSP pipeline for LINCS_GCP_Plate30_annotated_minimized_2018-05-07_16-32-39
09 Jun 2019 11:32:02,876 INFO : Submitting job for runId: 31581, name: LINCS_GCP_Plate30_annotated_minimized_2018-05-07_16-32-39
09 Jun 2019 11:32:02,878 INFO : Looking for existing job with name LINCS_GCP_Plate30_annotated_minimized_2018-05-07_16-32-39
09 Jun 2019 11:32:02,988 INFO : PSP job name: LINCS_GCP_Plate30_annotated_minimized_2018-05-07_16-32-39
09 Jun 2019 11:32:02,988 INFO : Sending JSON:
09 Jun 2019 11:32:02,989 INFO : {
  "level 4": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate30_annotated_minimized_2018-05-07_16-32-39_LVL4.gct"
  }},
  "assay": "GCP",
  "name": "LINCS_GCP_Plate30_annotated_minimized_2018-05-07_16-32-39",
  "config": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate30_annotated_minimized_2018-05-07_16-32-39.cfg"
  }},
  "level 2": {"panorama": {
    "method": "GET",
    "url": "https://panoramaweb.org/lincs/LINCS/GCP/runGCTReportApi.view?runId=31581&remote=true&reportName=GCT%20File%20GCP"
  }},
  "level 3": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate30_annotated_minimized_2018-05-07_16-32-39_LVL3.gct"
  }}
}
09 Jun 2019 11:32:02,989 INFO : Sending POST request to https://api.clue.io/api/psp
09 Jun 2019 11:32:03,158 INFO : Response code - 200
09 Jun 2019 11:32:03,158 INFO : Response from server: {"name":"LINCS_GCP_Plate30_annotated_minimized_2018-05-07_16-32-39","assay":"GCP","status":"Waiting_To_Download","id":"5cfd50a3344c151e38c98d88","created":"2019-06-09T18:32:03.048Z","last_modified":"2019-06-09T18:32:03.048Z","level 2":{"panorama":{"method":"GET","url":"https://panoramaweb.org/lincs/LINCS/GCP/runGCTReportApi.view?runId=31581&remote=true&reportName=GCT%20File%20GCP"}},"level 3":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate30_annotated_minimized_2018-05-07_16-32-39_LVL3.gct"}},"level 4":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate30_annotated_minimized_2018-05-07_16-32-39_LVL4.gct"}},"config":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate30_annotated_minimized_2018-05-07_16-32-39.cfg"}}}
09 Jun 2019 11:32:03,159 INFO : Sent POST request to https://api.clue.io/api/psp
09 Jun 2019 11:32:03,161 INFO : Checking status of job 5cfd50a3344c151e38c98d88
09 Jun 2019 11:32:03,266 INFO : Status: Waiting_To_Download
09 Jun 2019 11:32:23,266 INFO : Checking status of job 5cfd50a3344c151e38c98d88
09 Jun 2019 11:32:23,525 INFO : Status: created LVL 3 GCT
09 Jun 2019 11:32:43,526 INFO : Checking status of job 5cfd50a3344c151e38c98d88
09 Jun 2019 11:32:43,919 INFO : Status: POUR : succeeded in uploading all GCTs to Panorama
09 Jun 2019 11:32:43,920 INFO : PSP job completed with status: POUR : succeeded in uploading all GCTs to Panorama
09 Jun 2019 11:32:43,920 INFO : Finished running LINCS PSP pipeline.
09 Jun 2019 11:32:43,920 INFO : Successfully completed task 'org.labkey.lincs.psp.LincsPspTask'