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Running LINCS pipeline on PSP for: LINCS_GCP_Plate71a_annotated_minimized_2019-04-29_17-10-54

GCP

Job Status

Created: 2019-06-09 11:20:12
Modified: 2020-06-01 16:36:20
Email: vsharma@uw.edu
Status: ERROR
Info:
Description: Running LINCS pipeline on PSP for: LINCS_GCP_Plate71a_annotated_minimized_2019-04-29_17-10-54
File Path: /data/labkey/files/LINCS/GCP/@files/LincsPSP_LINCS_GCP_Plate71a_annotated_minimized_2019-04-29_17-10-54_2019-06-09_11-20-11.log
Files: LincsPSP_LINCS_GCP_Plate71a_annotated_minimized_2019-04-29_17-10-54_2019-06-09_11-20-11.log
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Log File


09 Jun 2019 11:20:11,955 INFO : Running LINCS pipeline on PSP for:  LINCS_GCP_Plate71a_annotated_minimized_2019-04-29_17-10-54
09 Jun 2019 11:20:11,956 INFO : =======================================
09 Jun 2019 11:25:48,883 INFO : Starting to run task 'org.labkey.lincs.psp.LincsPspTask' at location 'webserver-high-priority'
09 Jun 2019 11:25:48,884 INFO : Running LINCS PSP pipeline for LINCS_GCP_Plate71a_annotated_minimized_2019-04-29_17-10-54
09 Jun 2019 11:25:48,884 INFO : Submitting job for runId: 65034, name: LINCS_GCP_Plate71a_annotated_minimized_2019-04-29_17-10-54
09 Jun 2019 11:25:48,886 INFO : Looking for existing job with name LINCS_GCP_Plate71a_annotated_minimized_2019-04-29_17-10-54
09 Jun 2019 11:25:48,991 INFO : PSP job name: LINCS_GCP_Plate71a_annotated_minimized_2019-04-29_17-10-54
09 Jun 2019 11:25:48,992 INFO : Sending JSON:
09 Jun 2019 11:25:48,993 INFO : {
  "level 4": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate71a_annotated_minimized_2019-04-29_17-10-54_LVL4.gct"
  }},
  "assay": "GCP",
  "name": "LINCS_GCP_Plate71a_annotated_minimized_2019-04-29_17-10-54",
  "config": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate71a_annotated_minimized_2019-04-29_17-10-54.cfg"
  }},
  "level 2": {"panorama": {
    "method": "GET",
    "url": "https://panoramaweb.org/lincs/LINCS/GCP/runGCTReportApi.view?runId=65034&remote=true&reportName=GCT%20File%20GCP"
  }},
  "level 3": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate71a_annotated_minimized_2019-04-29_17-10-54_LVL3.gct"
  }}
}
09 Jun 2019 11:25:48,993 INFO : Sending POST request to https://api.clue.io/api/psp
09 Jun 2019 11:25:49,156 INFO : Response code - 200
09 Jun 2019 11:25:49,156 INFO : Response from server: {"name":"LINCS_GCP_Plate71a_annotated_minimized_2019-04-29_17-10-54","assay":"GCP","status":"Waiting_To_Download","id":"5cfd4f2d344c151e38c98d7e","created":"2019-06-09T18:25:49.052Z","last_modified":"2019-06-09T18:25:49.052Z","level 2":{"panorama":{"method":"GET","url":"https://panoramaweb.org/lincs/LINCS/GCP/runGCTReportApi.view?runId=65034&remote=true&reportName=GCT%20File%20GCP"}},"level 3":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate71a_annotated_minimized_2019-04-29_17-10-54_LVL3.gct"}},"level 4":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate71a_annotated_minimized_2019-04-29_17-10-54_LVL4.gct"}},"config":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate71a_annotated_minimized_2019-04-29_17-10-54.cfg"}}}
09 Jun 2019 11:25:49,157 INFO : Sent POST request to https://api.clue.io/api/psp
09 Jun 2019 11:25:49,159 INFO : Checking status of job 5cfd4f2d344c151e38c98d7e
09 Jun 2019 11:25:49,266 INFO : Status: Waiting_To_Download
09 Jun 2019 11:26:09,267 INFO : Checking status of job 5cfd4f2d344c151e38c98d7e
09 Jun 2019 11:26:09,575 INFO : Status: created LVL2 GCT
09 Jun 2019 11:26:09,576 ERROR: Error in PSP job. Error: level 3: dry error: The assay type is not a recognized P100 or GCP assay. assay_type: NA, p100_assays: ['P100', 'PR1', 'DIA1', 'PRM'], gcp_assays: ['GCP', 'GR1', 'GR2', 'EPI']
09 Jun 2019 11:26:10,277 INFO : Finished running LINCS PSP pipeline.
09 Jun 2019 11:26:10,277 INFO : Successfully completed task 'org.labkey.lincs.psp.LincsPspTask'