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Running LINCS pipeline on PSP for: LINCS_GCP_PlateCPTAC_annotated_minimized_2018-05-10_10-41-20

GCP

Job Status

Created: 2019-06-09 11:18:37
Modified: 2020-06-01 16:36:20
Email: vsharma@uw.edu
Status: COMPLETE
Info:
Description: Running LINCS pipeline on PSP for: LINCS_GCP_PlateCPTAC_annotated_minimized_2018-05-10_10-41-20
File Path: /data/labkey/files/LINCS/GCP/@files/LincsPSP_LINCS_GCP_PlateCPTAC_annotated_minimized_2018-05-10_10-41-20_2019-06-09_11-18-36.log
Files: LincsPSP_LINCS_GCP_PlateCPTAC_annotated_minimized_2018-05-10_10-41-20_2019-06-09_11-18-36.log
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Log File


09 Jun 2019 11:18:37,346 INFO : Running LINCS pipeline on PSP for:  LINCS_GCP_PlateCPTAC_annotated_minimized_2018-05-10_10-41-20
09 Jun 2019 11:18:37,346 INFO : =======================================
09 Jun 2019 11:18:37,899 INFO : Starting to run task 'org.labkey.lincs.psp.LincsPspTask' at location 'webserver-high-priority'
09 Jun 2019 11:18:37,899 INFO : Running LINCS PSP pipeline for LINCS_GCP_PlateCPTAC_annotated_minimized_2018-05-10_10-41-20
09 Jun 2019 11:18:37,900 INFO : Submitting job for runId: 31777, name: LINCS_GCP_PlateCPTAC_annotated_minimized_2018-05-10_10-41-20
09 Jun 2019 11:18:37,902 INFO : Looking for existing job with name LINCS_GCP_PlateCPTAC_annotated_minimized_2018-05-10_10-41-20
09 Jun 2019 11:18:38,150 INFO : PSP job name: LINCS_GCP_PlateCPTAC_annotated_minimized_2018-05-10_10-41-20
09 Jun 2019 11:18:38,151 INFO : Sending JSON:
09 Jun 2019 11:18:38,151 INFO : {
  "level 4": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_PlateCPTAC_annotated_minimized_2018-05-10_10-41-20_LVL4.gct"
  }},
  "assay": "GCP",
  "name": "LINCS_GCP_PlateCPTAC_annotated_minimized_2018-05-10_10-41-20",
  "config": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_PlateCPTAC_annotated_minimized_2018-05-10_10-41-20.cfg"
  }},
  "level 2": {"panorama": {
    "method": "GET",
    "url": "https://panoramaweb.org/lincs/LINCS/GCP/runGCTReportApi.view?runId=31777&remote=true&reportName=GCT%20File%20GCP"
  }},
  "level 3": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_PlateCPTAC_annotated_minimized_2018-05-10_10-41-20_LVL3.gct"
  }}
}
09 Jun 2019 11:18:38,152 INFO : Sending POST request to https://api.clue.io/api/psp
09 Jun 2019 11:18:38,344 INFO : Response code - 200
09 Jun 2019 11:18:38,344 INFO : Response from server: {"name":"LINCS_GCP_PlateCPTAC_annotated_minimized_2018-05-10_10-41-20","assay":"GCP","status":"Waiting_To_Download","id":"5cfd4d7e344c151e38c98d77","created":"2019-06-09T18:18:38.212Z","last_modified":"2019-06-09T18:18:38.212Z","level 2":{"panorama":{"method":"GET","url":"https://panoramaweb.org/lincs/LINCS/GCP/runGCTReportApi.view?runId=31777&remote=true&reportName=GCT%20File%20GCP"}},"level 3":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_PlateCPTAC_annotated_minimized_2018-05-10_10-41-20_LVL3.gct"}},"level 4":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_PlateCPTAC_annotated_minimized_2018-05-10_10-41-20_LVL4.gct"}},"config":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_PlateCPTAC_annotated_minimized_2018-05-10_10-41-20.cfg"}}}
09 Jun 2019 11:18:38,345 INFO : Sent POST request to https://api.clue.io/api/psp
09 Jun 2019 11:18:38,348 INFO : Checking status of job 5cfd4d7e344c151e38c98d77
09 Jun 2019 11:18:38,455 INFO : Status: Waiting_To_Download
09 Jun 2019 11:18:58,455 INFO : Checking status of job 5cfd4d7e344c151e38c98d77
09 Jun 2019 11:18:58,703 INFO : Status: created LVL 3 GCT
09 Jun 2019 11:19:18,704 INFO : Checking status of job 5cfd4d7e344c151e38c98d77
09 Jun 2019 11:19:18,953 INFO : Status: POUR : succeeded in uploading all GCTs to Panorama
09 Jun 2019 11:19:18,953 INFO : PSP job completed with status: POUR : succeeded in uploading all GCTs to Panorama
09 Jun 2019 11:19:18,953 INFO : Finished running LINCS PSP pipeline.
09 Jun 2019 11:19:18,954 INFO : Successfully completed task 'org.labkey.lincs.psp.LincsPspTask'