19 Apr 2021 05:47:07,710 INFO : Re-running LINCS pipeline for: LINCS_GCP_Plate64_annotated_minimized_2018-04-20_14-41-08
19 Apr 2021 05:47:07,712 INFO : =======================================
19 Apr 2021 05:52:44,470 INFO : Starting to run task 'org.labkey.lincs.cromwell.CromwellGctTask' at location 'webserver-high-priority'
19 Apr 2021 05:52:44,470 INFO : Starting task to create L2 GCT for LINCS_GCP_Plate64_annotated_minimized_2018-04-20_14-41-08.sky.zip
19 Apr 2021 05:52:44,475 INFO : Submitting job to http://m002.grid.gs.washington.edu:8000/api/workflows/v1
19 Apr 2021 05:52:44,497 INFO : Checking status of job at http://m002.grid.gs.washington.edu:8000/api/workflows/v1/f9ff6d93-7cc9-4a3c-aee3-faddc7496a80/status
19 Apr 2021 05:53:04,518 INFO : Cromwell job status: Running
19 Apr 2021 05:53:44,562 INFO : Cromwell job status: Succeeded
19 Apr 2021 05:53:44,562 INFO : Cromwell job completed successfully
19 Apr 2021 05:53:44,563 INFO : Successfully completed task 'org.labkey.lincs.cromwell.CromwellGctTask'
19 Apr 2021 06:36:26,428 INFO : Starting to run task 'org.labkey.lincs.psp.LincsPspTask' at location 'webserver-high-priority'
19 Apr 2021 06:36:26,430 INFO : Running LINCS PSP pipeline for LINCS_GCP_Plate64_annotated_minimized_2018-04-20_14-41-08
19 Apr 2021 06:36:26,430 INFO : Resubmitting job for runId: 30549, name: LINCS_GCP_Plate64_annotated_minimized_2018-04-20_14-41-08
19 Apr 2021 06:36:26,430 INFO : Old job details:
19 Apr 2021 06:36:26,430 INFO : Id: 106
19 Apr 2021 06:36:26,430 INFO : Pipeline job Id: 68231
19 Apr 2021 06:36:26,430 INFO : Run Id: 30549
19 Apr 2021 06:36:26,430 INFO : PSP Job Id: 5cfd57c5344c151e38c98da6
19 Apr 2021 06:36:26,430 INFO : PSP Job name: LINCS_GCP_Plate64_annotated_minimized_2018-04-20_14-41-08
19 Apr 2021 06:36:26,431 INFO : PSP Job status: POUR : succeeded in uploading all GCTs to Panorama
19 Apr 2021 06:36:26,431 INFO : JSON: {"level 4":{"s3":{"url":"s3://proteomics.clue.io/psp/level4/LINCS_GCP_Plate64_annotated_minimized_2018-04-20_14-41-08_LVL4.gct"},"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate64_annotated_minimized_2018-04-20_14-41-08_LVL4.gct"}},"assay":"GCP","created":"2019-06-09T19:02:29.577Z","name":"LINCS_GCP_Plate64_annotated_minimized_2018-04-20_14-41-08","id":"5cfd57c5344c151e38c98da6","last_modified":"2019-06-09T19:02:58.348Z","config":{"s3":{"url":"s3://proteomics.clue.io/psp/config/LINCS_GCP_Plate64_annotated_minimized_2018-04-20_14-41-08.cfg"},"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate64_annotated_minimized_2018-04-20_14-41-08.cfg"}},"level 2":{"s3":{"url":"s3://proteomics.clue.io/psp/level2/LINCS_GCP_Plate64_annotated_minimized_2018-04-20_14-41-08_LVL2.gct"},"panorama":{"method":"GET","url":"https://panoramaweb.org/lincs/LINCS/GCP/runGCTReportApi.view?runId=30549&remote=true&reportName=GCT%20File%20GCP"}},"status":"POUR : succeeded in uploading all GCTs to Panorama","level 3":{"s3":{"url":"s3://proteomics.clue.io/psp/level3/LINCS_GCP_Plate64_annotated_minimized_2018-04-20_14-41-08_LVL3.gct"},"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate64_annotated_minimized_2018-04-20_14-41-08_LVL3.gct"}}}
19 Apr 2021 06:36:26,431 INFO : Resubmitting...
19 Apr 2021 06:36:26,432 INFO : Looking for existing job with name LINCS_GCP_Plate64_annotated_minimized_2018-04-20_14-41-08
19 Apr 2021 06:36:26,649 INFO : Job with name LINCS_GCP_Plate64_annotated_minimized_2018-04-20_14-41-08exists.
19 Apr 2021 06:36:26,649 INFO : Looking for existing job with name LINCS_GCP_Plate64_annotated_minimized_2018-04-20_14-41-08_2
19 Apr 2021 06:36:26,780 INFO : Job with name LINCS_GCP_Plate64_annotated_minimized_2018-04-20_14-41-08_2exists.
19 Apr 2021 06:36:26,780 INFO : Looking for existing job with name LINCS_GCP_Plate64_annotated_minimized_2018-04-20_14-41-08_3
19 Apr 2021 06:36:26,914 INFO : PSP job name: LINCS_GCP_Plate64_annotated_minimized_2018-04-20_14-41-08_3
19 Apr 2021 06:36:26,917 INFO : Sending JSON:
19 Apr 2021 06:36:26,917 INFO : {
"level 4": {"panorama": {
"method": "PUT",
"url": "https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate64_annotated_minimized_2018-04-20_14-41-08_LVL4.gct"
}},
"assay": "GCP",
"name": "LINCS_GCP_Plate64_annotated_minimized_2018-04-20_14-41-08_3",
"config": {"panorama": {
"method": "PUT",
"url": "https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate64_annotated_minimized_2018-04-20_14-41-08.cfg"
}},
"level 2": {"panorama": {
"method": "GET",
"url": "https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate64_annotated_minimized_2018-04-20_14-41-08.gct"
}},
"level 3": {"panorama": {
"method": "PUT",
"url": "https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate64_annotated_minimized_2018-04-20_14-41-08_LVL3.gct"
}}
}
19 Apr 2021 06:36:26,917 INFO : Sending POST request to https://api.clue.io/api/psp
19 Apr 2021 06:36:27,116 INFO : Response code - 200
19 Apr 2021 06:36:27,116 INFO : Response from server: {"name":"LINCS_GCP_Plate64_annotated_minimized_2018-04-20_14-41-08_3","assay":"GCP","status":"Waiting_To_Download","id":"607d875a1986780011511875","created":"2021-04-19T13:36:26.994Z","last_modified":"2021-04-19T13:36:26.994Z","level 2":{"panorama":{"method":"GET","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate64_annotated_minimized_2018-04-20_14-41-08.gct"}},"level 3":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate64_annotated_minimized_2018-04-20_14-41-08_LVL3.gct"}},"level 4":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate64_annotated_minimized_2018-04-20_14-41-08_LVL4.gct"}},"config":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate64_annotated_minimized_2018-04-20_14-41-08.cfg"}}}
19 Apr 2021 06:36:27,117 INFO : Sent POST request to https://api.clue.io/api/psp
19 Apr 2021 06:36:27,118 INFO : Checking status of job 607d875a1986780011511875
19 Apr 2021 06:36:27,255 INFO : Status: Waiting_To_Download
19 Apr 2021 06:36:47,257 INFO : Checking status of job 607d875a1986780011511875
19 Apr 2021 06:36:47,542 INFO : Status: created LVL 3 GCT
19 Apr 2021 06:37:07,548 INFO : Checking status of job 607d875a1986780011511875
19 Apr 2021 06:37:07,837 INFO : Status: created LVL 4 GCT
19 Apr 2021 06:37:27,839 INFO : Checking status of job 607d875a1986780011511875
19 Apr 2021 06:37:28,131 INFO : Status: created LVL 4 GCT
19 Apr 2021 06:37:48,134 INFO : Checking status of job 607d875a1986780011511875
19 Apr 2021 06:37:48,504 INFO : Status: created LVL 4 GCT
19 Apr 2021 06:38:08,506 INFO : Checking status of job 607d875a1986780011511875
19 Apr 2021 06:38:08,798 INFO : Status: created LVL 4 GCT
19 Apr 2021 06:38:28,801 INFO : Checking status of job 607d875a1986780011511875
19 Apr 2021 06:38:29,093 INFO : Status: created LVL 4 GCT
19 Apr 2021 06:38:49,097 INFO : Checking status of job 607d875a1986780011511875
19 Apr 2021 06:38:49,392 INFO : Status: created LVL 4 GCT
19 Apr 2021 06:39:09,394 INFO : Checking status of job 607d875a1986780011511875
19 Apr 2021 06:39:09,767 INFO : Status: created LVL 4 GCT
19 Apr 2021 06:39:29,773 INFO : Checking status of job 607d875a1986780011511875
19 Apr 2021 06:39:30,064 INFO : Status: created LVL 4 GCT
19 Apr 2021 06:39:50,066 INFO : Checking status of job 607d875a1986780011511875
19 Apr 2021 06:39:50,352 INFO : Status: created LVL 4 GCT
19 Apr 2021 06:40:10,354 INFO : Checking status of job 607d875a1986780011511875
19 Apr 2021 06:40:10,645 INFO : Status: created LVL 4 GCT
19 Apr 2021 06:40:30,649 INFO : Checking status of job 607d875a1986780011511875
19 Apr 2021 06:40:31,023 INFO : Status: created LVL 4 GCT
19 Apr 2021 06:40:51,025 INFO : Checking status of job 607d875a1986780011511875
19 Apr 2021 06:40:51,312 INFO : Status: created LVL 4 GCT
19 Apr 2021 06:41:11,316 INFO : Checking status of job 607d875a1986780011511875
19 Apr 2021 06:41:11,698 INFO : Status: created LVL 4 GCT
19 Apr 2021 06:41:31,700 INFO : Checking status of job 607d875a1986780011511875
19 Apr 2021 06:41:31,990 INFO : Status: created LVL 4 GCT
19 Apr 2021 06:41:51,992 INFO : Checking status of job 607d875a1986780011511875
19 Apr 2021 06:41:52,279 INFO : Status: created LVL 4 GCT
19 Apr 2021 06:42:12,282 INFO : Checking status of job 607d875a1986780011511875
19 Apr 2021 06:42:12,570 INFO : Status: created LVL 4 GCT
19 Apr 2021 06:42:32,573 INFO : Checking status of job 607d875a1986780011511875
19 Apr 2021 06:42:32,993 INFO : Status: created LVL 4 GCT
19 Apr 2021 06:42:53,000 INFO : Checking status of job 607d875a1986780011511875
19 Apr 2021 06:42:53,285 INFO : Status: created LVL 4 GCT
19 Apr 2021 06:43:13,288 INFO : Checking status of job 607d875a1986780011511875
19 Apr 2021 06:43:13,579 INFO : Status: created LVL 4 GCT
19 Apr 2021 06:43:33,581 INFO : Checking status of job 607d875a1986780011511875
19 Apr 2021 06:43:33,863 INFO : Status: created LVL 4 GCT
19 Apr 2021 06:43:53,865 INFO : Checking status of job 607d875a1986780011511875
19 Apr 2021 06:43:54,226 INFO : Status: created LVL 4 GCT
19 Apr 2021 06:44:14,228 INFO : Checking status of job 607d875a1986780011511875
19 Apr 2021 06:44:14,521 INFO : Status: created LVL 4 GCT
19 Apr 2021 06:44:34,523 INFO : Checking status of job 607d875a1986780011511875
19 Apr 2021 06:44:34,806 INFO : Status: created LVL 4 GCT
19 Apr 2021 06:44:54,809 INFO : Checking status of job 607d875a1986780011511875
19 Apr 2021 06:44:55,095 INFO : Status: created LVL 4 GCT
19 Apr 2021 06:45:15,099 INFO : Checking status of job 607d875a1986780011511875
19 Apr 2021 06:45:15,471 INFO : Status: created LVL 4 GCT
19 Apr 2021 06:45:35,473 INFO : Checking status of job 607d875a1986780011511875
19 Apr 2021 06:45:35,766 INFO : Status: created LVL 4 GCT
19 Apr 2021 06:45:55,768 INFO : Checking status of job 607d875a1986780011511875
19 Apr 2021 06:45:56,056 INFO : Status: created LVL 4 GCT
19 Apr 2021 06:46:16,063 INFO : Checking status of job 607d875a1986780011511875
19 Apr 2021 06:46:16,349 INFO : Status: created LVL 4 GCT
19 Apr 2021 06:46:36,351 INFO : Checking status of job 607d875a1986780011511875
19 Apr 2021 06:46:36,641 INFO : Status: created LVL 4 GCT
19 Apr 2021 06:46:56,643 INFO : Checking status of job 607d875a1986780011511875
19 Apr 2021 06:46:56,935 INFO : Status: created LVL 4 GCT
19 Apr 2021 06:47:16,938 INFO : Checking status of job 607d875a1986780011511875
19 Apr 2021 06:47:17,226 INFO : Status: created LVL 4 GCT
19 Apr 2021 06:47:37,235 INFO : Checking status of job 607d875a1986780011511875
19 Apr 2021 06:47:37,459 INFO : Failed to complete task 'org.labkey.lincs.psp.LincsPspTask'
19 Apr 2021 06:47:37,463 ERROR: An error occurred getting PSP job status
org.labkey.api.pipeline.PipelineJobException: An error occurred getting PSP job status
at org.labkey.lincs.psp.LincsPspTask.postToPsp(LincsPspTask.java:125)
at org.labkey.lincs.psp.LincsPspTask.run(LincsPspTask.java:36)
at org.labkey.api.pipeline.PipelineJob.runActiveTask(PipelineJob.java:818)
at org.labkey.api.pipeline.PipelineJob.run(PipelineJob.java:1055)
at org.labkey.pipeline.mule.PipelineJobRunner.run(PipelineJobRunner.java:40)
at jdk.internal.reflect.GeneratedMethodAccessor1683.invoke(Unknown Source)
at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.base/java.lang.reflect.Method.invoke(Method.java:564)
at org.mule.impl.model.resolvers.DynamicEntryPoint.invokeMethod(DynamicEntryPoint.java:312)
at org.mule.impl.model.resolvers.DynamicEntryPoint.invoke(DynamicEntryPoint.java:259)
at org.mule.impl.DefaultLifecycleAdapter.intercept(DefaultLifecycleAdapter.java:193)
at org.mule.impl.InterceptorsInvoker.execute(InterceptorsInvoker.java:47)
at org.mule.impl.model.DefaultMuleProxy.run(DefaultMuleProxy.java:470)
at org.mule.impl.work.WorkerContext.run(WorkerContext.java:310)
at edu.emory.mathcs.backport.java.util.concurrent.ThreadPoolExecutor$CallerRunsPolicy.rejectedExecution(ThreadPoolExecutor.java:1486)
at edu.emory.mathcs.backport.java.util.concurrent.ThreadPoolExecutor.reject(ThreadPoolExecutor.java:391)
at edu.emory.mathcs.backport.java.util.concurrent.ThreadPoolExecutor.execute(ThreadPoolExecutor.java:865)
at org.mule.impl.work.ScheduleWorkExecutor.doExecute(ScheduleWorkExecutor.java:39)
at org.mule.impl.work.MuleWorkManager.executeWork(MuleWorkManager.java:277)
at org.mule.impl.work.MuleWorkManager.scheduleWork(MuleWorkManager.java:244)
at org.mule.impl.model.seda.SedaComponent.run(SedaComponent.java:483)
at org.mule.impl.work.WorkerContext.run(WorkerContext.java:310)
at edu.emory.mathcs.backport.java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:650)
at edu.emory.mathcs.backport.java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:675)
at java.base/java.lang.Thread.run(Thread.java:832)
Caused by: java.io.IOException: Server returned HTTP response code: 502 for URL: https://api.clue.io/api/psp/607d875a1986780011511875
at java.base/jdk.internal.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at java.base/jdk.internal.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:64)
at java.base/jdk.internal.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
at java.base/java.lang.reflect.Constructor.newInstanceWithCaller(Constructor.java:500)
at java.base/java.lang.reflect.Constructor.newInstance(Constructor.java:481)
at java.base/sun.net.www.protocol.http.HttpURLConnection$10.run(HttpURLConnection.java:1982)
at java.base/sun.net.www.protocol.http.HttpURLConnection$10.run(HttpURLConnection.java:1977)
at java.base/java.security.AccessController.doPrivileged(AccessController.java:554)
at java.base/sun.net.www.protocol.http.HttpURLConnection.getChainedException(HttpURLConnection.java:1976)
at java.base/sun.net.www.protocol.http.HttpURLConnection.getInputStream0(HttpURLConnection.java:1544)
at java.base/sun.net.www.protocol.http.HttpURLConnection.getInputStream(HttpURLConnection.java:1528)
at java.base/sun.net.www.protocol.https.HttpsURLConnectionImpl.getInputStream(HttpsURLConnectionImpl.java:224)
at org.labkey.lincs.psp.LincsPspUtil.getJobStatus(LincsPspUtil.java:413)
at org.labkey.lincs.psp.LincsPspUtil.updateJobStatus(LincsPspUtil.java:265)
at org.labkey.lincs.psp.LincsPspTask.postToPsp(LincsPspTask.java:109)
... 24 more
Caused by: java.io.IOException: Server returned HTTP response code: 502 for URL: https://api.clue.io/api/psp/607d875a1986780011511875
at java.base/sun.net.www.protocol.http.HttpURLConnection.getInputStream0(HttpURLConnection.java:1932)
at java.base/sun.net.www.protocol.http.HttpURLConnection.getInputStream(HttpURLConnection.java:1528)
at java.base/java.net.HttpURLConnection.getResponseCode(HttpURLConnection.java:527)
at java.base/sun.net.www.protocol.https.HttpsURLConnectionImpl.getResponseCode(HttpsURLConnectionImpl.java:308)
at org.labkey.lincs.psp.LincsPspUtil.getJobStatus(LincsPspUtil.java:411)
... 26 more
19 Apr 2021 07:19:14,784 INFO : Retrying job.
19 Apr 2021 07:19:14,784 DEBUG: Database indicates active task ID is org.labkey.lincs.psp.LincsPspTask
19 Apr 2021 07:19:14,784 DEBUG: Retry details: Old Job ID: 1bf6e38f-833b-1039-a447-fea6ddf5a122
19 Apr 2021 07:19:14,806 INFO : Starting to run task 'org.labkey.lincs.psp.LincsPspTask' at location 'webserver-high-priority'
19 Apr 2021 07:19:14,806 INFO : Running LINCS PSP pipeline for LINCS_GCP_Plate64_annotated_minimized_2018-04-20_14-41-08
19 Apr 2021 07:19:14,806 INFO : Resubmitting job for runId: 30549, name: LINCS_GCP_Plate64_annotated_minimized_2018-04-20_14-41-08
19 Apr 2021 07:19:14,806 INFO : Old job details:
19 Apr 2021 07:19:14,806 INFO : Id: 106
19 Apr 2021 07:19:14,806 INFO : Pipeline job Id: 68231
19 Apr 2021 07:19:14,807 INFO : Run Id: 30549
19 Apr 2021 07:19:14,807 INFO : PSP Job Id: 5cfd57c5344c151e38c98da6
19 Apr 2021 07:19:14,807 INFO : PSP Job name: LINCS_GCP_Plate64_annotated_minimized_2018-04-20_14-41-08
19 Apr 2021 07:19:14,807 INFO : PSP Job status: POUR : succeeded in uploading all GCTs to Panorama
19 Apr 2021 07:19:14,807 INFO : JSON: {"level 4":{"s3":{"url":"s3://proteomics.clue.io/psp/level4/LINCS_GCP_Plate64_annotated_minimized_2018-04-20_14-41-08_LVL4.gct"},"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate64_annotated_minimized_2018-04-20_14-41-08_LVL4.gct"}},"assay":"GCP","created":"2019-06-09T19:02:29.577Z","name":"LINCS_GCP_Plate64_annotated_minimized_2018-04-20_14-41-08","id":"5cfd57c5344c151e38c98da6","last_modified":"2019-06-09T19:02:58.348Z","config":{"s3":{"url":"s3://proteomics.clue.io/psp/config/LINCS_GCP_Plate64_annotated_minimized_2018-04-20_14-41-08.cfg"},"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate64_annotated_minimized_2018-04-20_14-41-08.cfg"}},"level 2":{"s3":{"url":"s3://proteomics.clue.io/psp/level2/LINCS_GCP_Plate64_annotated_minimized_2018-04-20_14-41-08_LVL2.gct"},"panorama":{"method":"GET","url":"https://panoramaweb.org/lincs/LINCS/GCP/runGCTReportApi.view?runId=30549&remote=true&reportName=GCT%20File%20GCP"}},"status":"POUR : succeeded in uploading all GCTs to Panorama","level 3":{"s3":{"url":"s3://proteomics.clue.io/psp/level3/LINCS_GCP_Plate64_annotated_minimized_2018-04-20_14-41-08_LVL3.gct"},"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate64_annotated_minimized_2018-04-20_14-41-08_LVL3.gct"}}}
19 Apr 2021 07:19:14,807 INFO : Resubmitting...
19 Apr 2021 07:19:14,808 INFO : Looking for existing job with name LINCS_GCP_Plate64_annotated_minimized_2018-04-20_14-41-08
19 Apr 2021 07:19:15,224 INFO : Job with name LINCS_GCP_Plate64_annotated_minimized_2018-04-20_14-41-08exists.
19 Apr 2021 07:19:15,224 INFO : Looking for existing job with name LINCS_GCP_Plate64_annotated_minimized_2018-04-20_14-41-08_2
19 Apr 2021 07:19:15,364 INFO : Job with name LINCS_GCP_Plate64_annotated_minimized_2018-04-20_14-41-08_2exists.
19 Apr 2021 07:19:15,364 INFO : Looking for existing job with name LINCS_GCP_Plate64_annotated_minimized_2018-04-20_14-41-08_3
19 Apr 2021 07:19:15,501 INFO : Job with name LINCS_GCP_Plate64_annotated_minimized_2018-04-20_14-41-08_3exists.
19 Apr 2021 07:19:15,501 INFO : Looking for existing job with name LINCS_GCP_Plate64_annotated_minimized_2018-04-20_14-41-08_4
19 Apr 2021 07:19:15,640 INFO : PSP job name: LINCS_GCP_Plate64_annotated_minimized_2018-04-20_14-41-08_4
19 Apr 2021 07:19:15,640 INFO : Sending JSON:
19 Apr 2021 07:19:15,641 INFO : {
"level 4": {"panorama": {
"method": "PUT",
"url": "https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate64_annotated_minimized_2018-04-20_14-41-08_LVL4.gct"
}},
"assay": "GCP",
"name": "LINCS_GCP_Plate64_annotated_minimized_2018-04-20_14-41-08_4",
"config": {"panorama": {
"method": "PUT",
"url": "https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate64_annotated_minimized_2018-04-20_14-41-08.cfg"
}},
"level 2": {"panorama": {
"method": "GET",
"url": "https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate64_annotated_minimized_2018-04-20_14-41-08.gct"
}},
"level 3": {"panorama": {
"method": "PUT",
"url": "https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate64_annotated_minimized_2018-04-20_14-41-08_LVL3.gct"
}}
}
19 Apr 2021 07:19:15,641 INFO : Sending POST request to https://api.clue.io/api/psp
19 Apr 2021 07:19:15,838 INFO : Response code - 200
19 Apr 2021 07:19:15,838 INFO : Response from server: {"name":"LINCS_GCP_Plate64_annotated_minimized_2018-04-20_14-41-08_4","assay":"GCP","status":"Waiting_To_Download","id":"607d916377d01b0017d7908c","created":"2021-04-19T14:19:15.720Z","last_modified":"2021-04-19T14:19:15.720Z","level 2":{"panorama":{"method":"GET","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate64_annotated_minimized_2018-04-20_14-41-08.gct"}},"level 3":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate64_annotated_minimized_2018-04-20_14-41-08_LVL3.gct"}},"level 4":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate64_annotated_minimized_2018-04-20_14-41-08_LVL4.gct"}},"config":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate64_annotated_minimized_2018-04-20_14-41-08.cfg"}}}
19 Apr 2021 07:19:15,839 INFO : Sent POST request to https://api.clue.io/api/psp
19 Apr 2021 07:19:15,841 INFO : Checking status of job 607d916377d01b0017d7908c
19 Apr 2021 07:19:15,981 INFO : Status: Waiting_To_Download
19 Apr 2021 07:19:35,984 INFO : Checking status of job 607d916377d01b0017d7908c
19 Apr 2021 07:19:36,275 INFO : Status: created LVL2 GCT
19 Apr 2021 07:19:56,278 INFO : Checking status of job 607d916377d01b0017d7908c
19 Apr 2021 07:19:56,574 INFO : Status: created LVL2 GCT
19 Apr 2021 07:20:16,577 INFO : Checking status of job 607d916377d01b0017d7908c
19 Apr 2021 07:20:16,868 INFO : Status: created LVL2 GCT
19 Apr 2021 07:20:36,881 INFO : Checking status of job 607d916377d01b0017d7908c
19 Apr 2021 07:20:37,276 INFO : Status: created LVL2 GCT
19 Apr 2021 07:20:57,277 INFO : Checking status of job 607d916377d01b0017d7908c
19 Apr 2021 07:20:57,561 INFO : Status: created LVL2 GCT
19 Apr 2021 07:21:17,563 INFO : Checking status of job 607d916377d01b0017d7908c
19 Apr 2021 07:21:17,857 INFO : Status: created LVL2 GCT
19 Apr 2021 07:21:37,859 INFO : Checking status of job 607d916377d01b0017d7908c
19 Apr 2021 07:21:38,148 INFO : Status: created LVL2 GCT
19 Apr 2021 07:21:58,151 INFO : Checking status of job 607d916377d01b0017d7908c
19 Apr 2021 07:21:58,527 INFO : Status: created LVL2 GCT
19 Apr 2021 07:22:18,529 INFO : Checking status of job 607d916377d01b0017d7908c
19 Apr 2021 07:22:18,825 INFO : Status: created LVL2 GCT
19 Apr 2021 07:22:38,828 INFO : Checking status of job 607d916377d01b0017d7908c
19 Apr 2021 07:22:39,123 INFO : Status: created LVL2 GCT
19 Apr 2021 07:22:59,125 INFO : Checking status of job 607d916377d01b0017d7908c
19 Apr 2021 07:22:59,417 INFO : Status: created LVL2 GCT
19 Apr 2021 07:23:19,419 INFO : Checking status of job 607d916377d01b0017d7908c
19 Apr 2021 07:23:19,794 INFO : Status: created LVL2 GCT
19 Apr 2021 07:23:39,796 INFO : Checking status of job 607d916377d01b0017d7908c
19 Apr 2021 07:23:40,094 INFO : Status: created LVL2 GCT
19 Apr 2021 07:24:00,096 INFO : Checking status of job 607d916377d01b0017d7908c
19 Apr 2021 07:24:00,398 INFO : Status: created LVL2 GCT
19 Apr 2021 07:24:20,400 INFO : Checking status of job 607d916377d01b0017d7908c
19 Apr 2021 07:24:20,684 INFO : Status: created LVL2 GCT
19 Apr 2021 07:24:40,686 INFO : Checking status of job 607d916377d01b0017d7908c
19 Apr 2021 07:24:41,065 INFO : Status: created LVL2 GCT
19 Apr 2021 07:25:01,069 INFO : Checking status of job 607d916377d01b0017d7908c
19 Apr 2021 07:25:01,359 INFO : Status: created LVL2 GCT
19 Apr 2021 07:25:21,361 INFO : Checking status of job 607d916377d01b0017d7908c
19 Apr 2021 07:25:21,737 INFO : Status: created LVL2 GCT
19 Apr 2021 07:25:41,739 INFO : Checking status of job 607d916377d01b0017d7908c
19 Apr 2021 07:25:42,029 INFO : Status: created LVL2 GCT
19 Apr 2021 07:26:02,031 INFO : Checking status of job 607d916377d01b0017d7908c
19 Apr 2021 07:26:02,323 INFO : Status: created LVL2 GCT
19 Apr 2021 07:26:22,326 INFO : Checking status of job 607d916377d01b0017d7908c
19 Apr 2021 07:26:22,616 INFO : Status: created LVL2 GCT
19 Apr 2021 07:26:42,618 INFO : Checking status of job 607d916377d01b0017d7908c
19 Apr 2021 07:26:43,057 INFO : Status: created LVL2 GCT
19 Apr 2021 07:27:03,059 INFO : Checking status of job 607d916377d01b0017d7908c
19 Apr 2021 07:27:03,348 INFO : Status: created LVL2 GCT
19 Apr 2021 07:27:23,350 INFO : Checking status of job 607d916377d01b0017d7908c
19 Apr 2021 07:27:23,641 INFO : Status: created LVL2 GCT
19 Apr 2021 07:27:43,644 INFO : Checking status of job 607d916377d01b0017d7908c
19 Apr 2021 07:27:43,934 INFO : Status: created LVL2 GCT
19 Apr 2021 07:28:03,936 INFO : Checking status of job 607d916377d01b0017d7908c
19 Apr 2021 07:28:04,309 INFO : Status: created LVL2 GCT
19 Apr 2021 07:28:24,312 INFO : Checking status of job 607d916377d01b0017d7908c
19 Apr 2021 07:28:24,600 INFO : Status: created LVL 3 GCT
19 Apr 2021 07:28:44,602 INFO : Checking status of job 607d916377d01b0017d7908c
19 Apr 2021 07:28:44,906 INFO : Status: POUR : succeeded in uploading all GCTs to Panorama
19 Apr 2021 07:28:44,906 INFO : PSP job completed with status: POUR : succeeded in uploading all GCTs to Panorama
19 Apr 2021 07:28:44,906 INFO : Finished running LINCS PSP pipeline.
19 Apr 2021 07:28:44,906 INFO : Successfully completed task 'org.labkey.lincs.psp.LincsPspTask'