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Re-running LINCS pipeline for: LINCS_GCP_Plate15_annotated_minimized_2018-05-02_22-46-29

GCP

Job Status

Created: 2021-04-19 05:46:54
Modified: 2021-04-19 06:36:26
Email: vsharma@uw.edu
Status: COMPLETE
Info:
Description: Re-running LINCS pipeline for: LINCS_GCP_Plate15_annotated_minimized_2018-05-02_22-46-29
File Path: /data/labkey/files/LINCS/GCP/@files/LincsPSP_rerun_LINCS_GCP_Plate15_annotated_minimized_2018-05-02_22-46-29_2021-04-19_05-46-53.log
Files: LincsPSP_rerun_LINCS_GCP_Plate15_annotated_minimized_2018-05-02_22-46-29_2021-04-19_05-46-53.log
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Log File


19 Apr 2021 05:46:54,237 INFO : Re-running LINCS pipeline for:  LINCS_GCP_Plate15_annotated_minimized_2018-05-02_22-46-29
19 Apr 2021 05:46:54,239 INFO : =======================================
19 Apr 2021 05:51:24,351 INFO : Starting to run task 'org.labkey.lincs.cromwell.CromwellGctTask' at location 'webserver-high-priority'
19 Apr 2021 05:51:24,351 INFO : Starting task to create L2 GCT for LINCS_GCP_Plate15_annotated_minimized_2018-05-02_22-46-29.sky.zip
19 Apr 2021 05:51:24,358 INFO : Submitting job to http://m002.grid.gs.washington.edu:8000/api/workflows/v1
19 Apr 2021 05:51:24,380 INFO : Checking status of job at http://m002.grid.gs.washington.edu:8000/api/workflows/v1/e274140b-9c90-40f5-a2f8-39575a5f3d88/status
19 Apr 2021 05:51:44,394 INFO : Cromwell job status: Running
19 Apr 2021 05:52:44,453 INFO : Cromwell job status: Succeeded
19 Apr 2021 05:52:44,453 INFO : Cromwell job completed successfully
19 Apr 2021 05:52:44,454 INFO : Successfully completed task 'org.labkey.lincs.cromwell.CromwellGctTask'
19 Apr 2021 06:30:59,948 INFO : Starting to run task 'org.labkey.lincs.psp.LincsPspTask' at location 'webserver-high-priority'
19 Apr 2021 06:30:59,949 INFO : Running LINCS PSP pipeline for LINCS_GCP_Plate15_annotated_minimized_2018-05-02_22-46-29
19 Apr 2021 06:30:59,949 INFO : Resubmitting job for runId: 31274, name: LINCS_GCP_Plate15_annotated_minimized_2018-05-02_22-46-29
19 Apr 2021 06:30:59,949 INFO : Old job details: 
19 Apr 2021 06:30:59,950 INFO : Id: 65
19 Apr 2021 06:30:59,950 INFO : Pipeline job Id: 68190
19 Apr 2021 06:30:59,950 INFO : Run Id: 31274
19 Apr 2021 06:30:59,950 INFO : PSP Job Id: 5cfd4dd0344c151e38c98d79
19 Apr 2021 06:30:59,950 INFO : PSP Job name: LINCS_GCP_Plate15_annotated_minimized_2018-05-02_22-46-29
19 Apr 2021 06:30:59,950 INFO : PSP Job status: POUR : succeeded in uploading all GCTs to Panorama
19 Apr 2021 06:30:59,950 INFO : JSON: {"level 4":{"s3":{"url":"s3://proteomics.clue.io/psp/level4/LINCS_GCP_Plate15_annotated_minimized_2018-05-02_22-46-29_LVL4.gct"},"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate15_annotated_minimized_2018-05-02_22-46-29_LVL4.gct"}},"assay":"GCP","created":"2019-06-09T18:20:00.860Z","name":"LINCS_GCP_Plate15_annotated_minimized_2018-05-02_22-46-29","id":"5cfd4dd0344c151e38c98d79","last_modified":"2019-06-09T18:20:33.069Z","config":{"s3":{"url":"s3://proteomics.clue.io/psp/config/LINCS_GCP_Plate15_annotated_minimized_2018-05-02_22-46-29.cfg"},"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate15_annotated_minimized_2018-05-02_22-46-29.cfg"}},"level 2":{"s3":{"url":"s3://proteomics.clue.io/psp/level2/LINCS_GCP_Plate15_annotated_minimized_2018-05-02_22-46-29_LVL2.gct"},"panorama":{"method":"GET","url":"https://panoramaweb.org/lincs/LINCS/GCP/runGCTReportApi.view?runId=31274&remote=true&reportName=GCT%20File%20GCP"}},"status":"POUR : succeeded in uploading all GCTs to Panorama","level 3":{"s3":{"url":"s3://proteomics.clue.io/psp/level3/LINCS_GCP_Plate15_annotated_minimized_2018-05-02_22-46-29_LVL3.gct"},"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate15_annotated_minimized_2018-05-02_22-46-29_LVL3.gct"}}}
19 Apr 2021 06:30:59,950 INFO : Resubmitting...
19 Apr 2021 06:30:59,951 INFO : Looking for existing job with name LINCS_GCP_Plate15_annotated_minimized_2018-05-02_22-46-29
19 Apr 2021 06:31:00,364 INFO : Job with name LINCS_GCP_Plate15_annotated_minimized_2018-05-02_22-46-29exists.
19 Apr 2021 06:31:00,364 INFO : Looking for existing job with name LINCS_GCP_Plate15_annotated_minimized_2018-05-02_22-46-29_2
19 Apr 2021 06:31:00,504 INFO : Job with name LINCS_GCP_Plate15_annotated_minimized_2018-05-02_22-46-29_2exists.
19 Apr 2021 06:31:00,504 INFO : Looking for existing job with name LINCS_GCP_Plate15_annotated_minimized_2018-05-02_22-46-29_3
19 Apr 2021 06:31:00,639 INFO : Job with name LINCS_GCP_Plate15_annotated_minimized_2018-05-02_22-46-29_3exists.
19 Apr 2021 06:31:00,640 INFO : Looking for existing job with name LINCS_GCP_Plate15_annotated_minimized_2018-05-02_22-46-29_4
19 Apr 2021 06:31:00,775 INFO : Job with name LINCS_GCP_Plate15_annotated_minimized_2018-05-02_22-46-29_4exists.
19 Apr 2021 06:31:00,775 INFO : Looking for existing job with name LINCS_GCP_Plate15_annotated_minimized_2018-05-02_22-46-29_5
19 Apr 2021 06:31:00,909 INFO : Job with name LINCS_GCP_Plate15_annotated_minimized_2018-05-02_22-46-29_5exists.
19 Apr 2021 06:31:00,909 INFO : Looking for existing job with name LINCS_GCP_Plate15_annotated_minimized_2018-05-02_22-46-29_6
19 Apr 2021 06:31:01,044 INFO : PSP job name: LINCS_GCP_Plate15_annotated_minimized_2018-05-02_22-46-29_6
19 Apr 2021 06:31:01,045 INFO : Sending JSON:
19 Apr 2021 06:31:01,045 INFO : {
  "level 4": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate15_annotated_minimized_2018-05-02_22-46-29_LVL4.gct"
  }},
  "assay": "GCP",
  "name": "LINCS_GCP_Plate15_annotated_minimized_2018-05-02_22-46-29_6",
  "config": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate15_annotated_minimized_2018-05-02_22-46-29.cfg"
  }},
  "level 2": {"panorama": {
    "method": "GET",
    "url": "https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate15_annotated_minimized_2018-05-02_22-46-29.gct"
  }},
  "level 3": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate15_annotated_minimized_2018-05-02_22-46-29_LVL3.gct"
  }}
}
19 Apr 2021 06:31:01,046 INFO : Sending POST request to https://api.clue.io/api/psp
19 Apr 2021 06:31:01,265 INFO : Response code - 200
19 Apr 2021 06:31:01,265 INFO : Response from server: {"name":"LINCS_GCP_Plate15_annotated_minimized_2018-05-02_22-46-29_6","assay":"GCP","status":"Waiting_To_Download","id":"607d861577d01b0017d7907e","created":"2021-04-19T13:31:01.125Z","last_modified":"2021-04-19T13:31:01.125Z","level 2":{"panorama":{"method":"GET","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate15_annotated_minimized_2018-05-02_22-46-29.gct"}},"level 3":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate15_annotated_minimized_2018-05-02_22-46-29_LVL3.gct"}},"level 4":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate15_annotated_minimized_2018-05-02_22-46-29_LVL4.gct"}},"config":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate15_annotated_minimized_2018-05-02_22-46-29.cfg"}}}
19 Apr 2021 06:31:01,266 INFO : Sent POST request to https://api.clue.io/api/psp
19 Apr 2021 06:31:01,268 INFO : Checking status of job 607d861577d01b0017d7907e
19 Apr 2021 06:31:01,404 INFO : Status: Waiting_To_Download
19 Apr 2021 06:31:21,406 INFO : Checking status of job 607d861577d01b0017d7907e
19 Apr 2021 06:31:21,702 INFO : Status: created LVL2 GCT
19 Apr 2021 06:31:41,705 INFO : Checking status of job 607d861577d01b0017d7907e
19 Apr 2021 06:31:41,998 INFO : Status: created LVL2 GCT
19 Apr 2021 06:32:02,000 INFO : Checking status of job 607d861577d01b0017d7907e
19 Apr 2021 06:32:02,288 INFO : Status: created LVL2 GCT
19 Apr 2021 06:32:22,289 INFO : Checking status of job 607d861577d01b0017d7907e
19 Apr 2021 06:32:22,577 INFO : Status: created LVL2 GCT
19 Apr 2021 06:32:42,579 INFO : Checking status of job 607d861577d01b0017d7907e
19 Apr 2021 06:32:42,869 INFO : Status: created LVL2 GCT
19 Apr 2021 06:33:02,872 INFO : Checking status of job 607d861577d01b0017d7907e
19 Apr 2021 06:33:03,163 INFO : Status: created LVL2 GCT
19 Apr 2021 06:33:23,165 INFO : Checking status of job 607d861577d01b0017d7907e
19 Apr 2021 06:33:23,447 INFO : Status: created LVL2 GCT
19 Apr 2021 06:33:43,451 INFO : Checking status of job 607d861577d01b0017d7907e
19 Apr 2021 06:33:43,828 INFO : Status: created LVL2 GCT
19 Apr 2021 06:34:03,833 INFO : Checking status of job 607d861577d01b0017d7907e
19 Apr 2021 06:34:04,128 INFO : Status: created LVL2 GCT
19 Apr 2021 06:34:24,130 INFO : Checking status of job 607d861577d01b0017d7907e
19 Apr 2021 06:34:24,421 INFO : Status: created LVL2 GCT
19 Apr 2021 06:34:44,425 INFO : Checking status of job 607d861577d01b0017d7907e
19 Apr 2021 06:34:44,714 INFO : Status: created LVL2 GCT
19 Apr 2021 06:35:04,717 INFO : Checking status of job 607d861577d01b0017d7907e
19 Apr 2021 06:35:05,139 INFO : Status: created LVL2 GCT
19 Apr 2021 06:35:25,140 INFO : Checking status of job 607d861577d01b0017d7907e
19 Apr 2021 06:35:25,433 INFO : Status: created LVL2 GCT
19 Apr 2021 06:35:45,435 INFO : Checking status of job 607d861577d01b0017d7907e
19 Apr 2021 06:35:45,727 INFO : Status: created LVL2 GCT
19 Apr 2021 06:36:05,731 INFO : Checking status of job 607d861577d01b0017d7907e
19 Apr 2021 06:36:06,023 INFO : Status: created LVL 3 GCT
19 Apr 2021 06:36:26,025 INFO : Checking status of job 607d861577d01b0017d7907e
19 Apr 2021 06:36:26,397 INFO : Status: POUR : succeeded in uploading all GCTs to Panorama
19 Apr 2021 06:36:26,397 INFO : PSP job completed with status: POUR : succeeded in uploading all GCTs to Panorama
19 Apr 2021 06:36:26,397 INFO : Finished running LINCS PSP pipeline.
19 Apr 2021 06:36:26,398 INFO : Successfully completed task 'org.labkey.lincs.psp.LincsPspTask'