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Re-running LINCS pipeline for: LINCS_GCP_Plate30_annotated_minimized_2018-05-07_16-32-39

GCP

Job Status

Created: 2021-04-18 22:10:17
Modified: 2021-04-18 23:02:44
Email: vsharma@uw.edu
Status: COMPLETE
Info:
Description: Re-running LINCS pipeline for: LINCS_GCP_Plate30_annotated_minimized_2018-05-07_16-32-39
File Path: /data/labkey/files/LINCS/GCP/@files/LincsPSP_rerun_LINCS_GCP_Plate30_annotated_minimized_2018-05-07_16-32-39_2021-04-18_22-10-17.log
Files: LincsPSP_rerun_LINCS_GCP_Plate30_annotated_minimized_2018-05-07_16-32-39_2021-04-18_22-10-17.log
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Log File


18 Apr 2021 22:10:17,955 INFO : Re-running LINCS pipeline for:  LINCS_GCP_Plate30_annotated_minimized_2018-05-07_16-32-39
18 Apr 2021 22:10:17,956 INFO : =======================================
18 Apr 2021 22:27:41,651 INFO : Starting to run task 'org.labkey.lincs.cromwell.CromwellGctTask' at location 'webserver-high-priority'
18 Apr 2021 22:27:41,653 INFO : Starting task to create L2 GCT for LINCS_GCP_Plate30_annotated_minimized_2018-05-07_16-32-39.sky.zip
18 Apr 2021 22:27:41,658 INFO : Submitting job to http://m002.grid.gs.washington.edu:8000/api/workflows/v1
18 Apr 2021 22:27:41,676 INFO : Checking status of job at http://m002.grid.gs.washington.edu:8000/api/workflows/v1/4e17fb5d-920e-4e26-8522-19ceaff23ee2/status
18 Apr 2021 22:28:01,693 INFO : Cromwell job status: Running
18 Apr 2021 22:29:01,767 INFO : Cromwell job status: Succeeded
18 Apr 2021 22:29:01,767 INFO : Cromwell job completed successfully
18 Apr 2021 22:29:01,768 INFO : Successfully completed task 'org.labkey.lincs.cromwell.CromwellGctTask'
18 Apr 2021 23:02:03,461 INFO : Starting to run task 'org.labkey.lincs.psp.LincsPspTask' at location 'webserver-high-priority'
18 Apr 2021 23:02:03,463 INFO : Running LINCS PSP pipeline for LINCS_GCP_Plate30_annotated_minimized_2018-05-07_16-32-39
18 Apr 2021 23:02:03,463 INFO : Resubmitting job for runId: 31581, name: LINCS_GCP_Plate30_annotated_minimized_2018-05-07_16-32-39
18 Apr 2021 23:02:03,463 INFO : Old job details: 
18 Apr 2021 23:02:03,463 INFO : Id: 80
18 Apr 2021 23:02:03,463 INFO : Pipeline job Id: 68205
18 Apr 2021 23:02:03,463 INFO : Run Id: 31581
18 Apr 2021 23:02:03,463 INFO : PSP Job Id: 5cfd50a3344c151e38c98d88
18 Apr 2021 23:02:03,463 INFO : PSP Job name: LINCS_GCP_Plate30_annotated_minimized_2018-05-07_16-32-39
18 Apr 2021 23:02:03,464 INFO : PSP Job status: POUR : succeeded in uploading all GCTs to Panorama
18 Apr 2021 23:02:03,464 INFO : JSON: {"level 4":{"s3":{"url":"s3://proteomics.clue.io/psp/level4/LINCS_GCP_Plate30_annotated_minimized_2018-05-07_16-32-39_LVL4.gct"},"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate30_annotated_minimized_2018-05-07_16-32-39_LVL4.gct"}},"assay":"GCP","created":"2019-06-09T18:32:03.048Z","name":"LINCS_GCP_Plate30_annotated_minimized_2018-05-07_16-32-39","id":"5cfd50a3344c151e38c98d88","last_modified":"2019-06-09T18:32:35.068Z","config":{"s3":{"url":"s3://proteomics.clue.io/psp/config/LINCS_GCP_Plate30_annotated_minimized_2018-05-07_16-32-39.cfg"},"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate30_annotated_minimized_2018-05-07_16-32-39.cfg"}},"level 2":{"s3":{"url":"s3://proteomics.clue.io/psp/level2/LINCS_GCP_Plate30_annotated_minimized_2018-05-07_16-32-39_LVL2.gct"},"panorama":{"method":"GET","url":"https://panoramaweb.org/lincs/LINCS/GCP/runGCTReportApi.view?runId=31581&remote=true&reportName=GCT%20File%20GCP"}},"status":"POUR : succeeded in uploading all GCTs to Panorama","level 3":{"s3":{"url":"s3://proteomics.clue.io/psp/level3/LINCS_GCP_Plate30_annotated_minimized_2018-05-07_16-32-39_LVL3.gct"},"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate30_annotated_minimized_2018-05-07_16-32-39_LVL3.gct"}}}
18 Apr 2021 23:02:03,464 INFO : Resubmitting...
18 Apr 2021 23:02:03,465 INFO : Looking for existing job with name LINCS_GCP_Plate30_annotated_minimized_2018-05-07_16-32-39
18 Apr 2021 23:02:03,604 INFO : Job with name LINCS_GCP_Plate30_annotated_minimized_2018-05-07_16-32-39exists.
18 Apr 2021 23:02:03,604 INFO : Looking for existing job with name LINCS_GCP_Plate30_annotated_minimized_2018-05-07_16-32-39_2
18 Apr 2021 23:02:03,742 INFO : Job with name LINCS_GCP_Plate30_annotated_minimized_2018-05-07_16-32-39_2exists.
18 Apr 2021 23:02:03,742 INFO : Looking for existing job with name LINCS_GCP_Plate30_annotated_minimized_2018-05-07_16-32-39_3
18 Apr 2021 23:02:03,878 INFO : PSP job name: LINCS_GCP_Plate30_annotated_minimized_2018-05-07_16-32-39_3
18 Apr 2021 23:02:03,881 INFO : Sending JSON:
18 Apr 2021 23:02:03,881 INFO : {
  "level 4": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate30_annotated_minimized_2018-05-07_16-32-39_LVL4.gct"
  }},
  "assay": "GCP",
  "name": "LINCS_GCP_Plate30_annotated_minimized_2018-05-07_16-32-39_3",
  "config": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate30_annotated_minimized_2018-05-07_16-32-39.cfg"
  }},
  "level 2": {"panorama": {
    "method": "GET",
    "url": "https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate30_annotated_minimized_2018-05-07_16-32-39.gct"
  }},
  "level 3": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate30_annotated_minimized_2018-05-07_16-32-39_LVL3.gct"
  }}
}
18 Apr 2021 23:02:03,881 INFO : Sending POST request to https://api.clue.io/api/psp
18 Apr 2021 23:02:04,075 INFO : Response code - 200
18 Apr 2021 23:02:04,075 INFO : Response from server: {"name":"LINCS_GCP_Plate30_annotated_minimized_2018-05-07_16-32-39_3","assay":"GCP","status":"Waiting_To_Download","id":"607d1cdb5e18ad0011655fec","created":"2021-04-19T06:02:03.961Z","last_modified":"2021-04-19T06:02:03.961Z","level 2":{"panorama":{"method":"GET","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate30_annotated_minimized_2018-05-07_16-32-39.gct"}},"level 3":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate30_annotated_minimized_2018-05-07_16-32-39_LVL3.gct"}},"level 4":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate30_annotated_minimized_2018-05-07_16-32-39_LVL4.gct"}},"config":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate30_annotated_minimized_2018-05-07_16-32-39.cfg"}}}
18 Apr 2021 23:02:04,075 INFO : Sent POST request to https://api.clue.io/api/psp
18 Apr 2021 23:02:04,076 INFO : Checking status of job 607d1cdb5e18ad0011655fec
18 Apr 2021 23:02:04,214 INFO : Status: Waiting_To_Download
18 Apr 2021 23:02:24,217 INFO : Checking status of job 607d1cdb5e18ad0011655fec
18 Apr 2021 23:02:24,510 INFO : Status: created LVL 3 GCT
18 Apr 2021 23:02:44,513 INFO : Checking status of job 607d1cdb5e18ad0011655fec
18 Apr 2021 23:02:44,891 INFO : Status: POUR : succeeded in uploading all GCTs to Panorama
18 Apr 2021 23:02:44,891 INFO : PSP job completed with status: POUR : succeeded in uploading all GCTs to Panorama
18 Apr 2021 23:02:44,891 INFO : Finished running LINCS PSP pipeline.
18 Apr 2021 23:02:44,891 INFO : Successfully completed task 'org.labkey.lincs.psp.LincsPspTask'