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Re-running LINCS pipeline for: LINCS_GCP_Plate24_annotated_minimized_2018-05-07_16-43-23

GCP

Job Status

Created: 2021-04-18 22:10:06
Modified: 2021-04-18 23:02:03
Email: vsharma@uw.edu
Status: COMPLETE
Info:
Description: Re-running LINCS pipeline for: LINCS_GCP_Plate24_annotated_minimized_2018-05-07_16-43-23
File Path: /data/labkey/files/LINCS/GCP/@files/LincsPSP_rerun_LINCS_GCP_Plate24_annotated_minimized_2018-05-07_16-43-23_2021-04-18_22-10-06.log
Files: LincsPSP_rerun_LINCS_GCP_Plate24_annotated_minimized_2018-05-07_16-43-23_2021-04-18_22-10-06.log
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Log File


18 Apr 2021 22:10:06,832 INFO : Re-running LINCS pipeline for:  LINCS_GCP_Plate24_annotated_minimized_2018-05-07_16-43-23
18 Apr 2021 22:10:06,833 INFO : =======================================
18 Apr 2021 22:26:21,522 INFO : Starting to run task 'org.labkey.lincs.cromwell.CromwellGctTask' at location 'webserver-high-priority'
18 Apr 2021 22:26:21,522 INFO : Starting task to create L2 GCT for LINCS_GCP_Plate24_annotated_minimized_2018-05-07_16-43-23.sky.zip
18 Apr 2021 22:26:21,529 INFO : Submitting job to http://m002.grid.gs.washington.edu:8000/api/workflows/v1
18 Apr 2021 22:26:21,550 INFO : Checking status of job at http://m002.grid.gs.washington.edu:8000/api/workflows/v1/f15cc760-a42f-45ae-9e0a-f0108b248cb1/status
18 Apr 2021 22:26:41,566 INFO : Cromwell job status: Running
18 Apr 2021 22:27:41,619 INFO : Cromwell job status: Succeeded
18 Apr 2021 22:27:41,619 INFO : Cromwell job completed successfully
18 Apr 2021 22:27:41,620 INFO : Successfully completed task 'org.labkey.lincs.cromwell.CromwellGctTask'
18 Apr 2021 22:57:53,261 INFO : Starting to run task 'org.labkey.lincs.psp.LincsPspTask' at location 'webserver-high-priority'
18 Apr 2021 22:57:53,262 INFO : Running LINCS PSP pipeline for LINCS_GCP_Plate24_annotated_minimized_2018-05-07_16-43-23
18 Apr 2021 22:57:53,263 INFO : Resubmitting job for runId: 31582, name: LINCS_GCP_Plate24_annotated_minimized_2018-05-07_16-43-23
18 Apr 2021 22:57:53,263 INFO : Old job details: 
18 Apr 2021 22:57:53,263 INFO : Id: 75
18 Apr 2021 22:57:53,263 INFO : Pipeline job Id: 68200
18 Apr 2021 22:57:53,263 INFO : Run Id: 31582
18 Apr 2021 22:57:53,263 INFO : PSP Job Id: 5cfd4fd4344c151e38c98d83
18 Apr 2021 22:57:53,263 INFO : PSP Job name: LINCS_GCP_Plate24_annotated_minimized_2018-05-07_16-43-23
18 Apr 2021 22:57:53,263 INFO : PSP Job status: POUR : succeeded in uploading all GCTs to Panorama
18 Apr 2021 22:57:53,263 INFO : JSON: {"level 4":{"s3":{"url":"s3://proteomics.clue.io/psp/level4/LINCS_GCP_Plate24_annotated_minimized_2018-05-07_16-43-23_LVL4.gct"},"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate24_annotated_minimized_2018-05-07_16-43-23_LVL4.gct"}},"assay":"GCP","created":"2019-06-09T18:28:36.044Z","name":"LINCS_GCP_Plate24_annotated_minimized_2018-05-07_16-43-23","id":"5cfd4fd4344c151e38c98d83","last_modified":"2019-06-09T18:29:04.487Z","config":{"s3":{"url":"s3://proteomics.clue.io/psp/config/LINCS_GCP_Plate24_annotated_minimized_2018-05-07_16-43-23.cfg"},"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate24_annotated_minimized_2018-05-07_16-43-23.cfg"}},"level 2":{"s3":{"url":"s3://proteomics.clue.io/psp/level2/LINCS_GCP_Plate24_annotated_minimized_2018-05-07_16-43-23_LVL2.gct"},"panorama":{"method":"GET","url":"https://panoramaweb.org/lincs/LINCS/GCP/runGCTReportApi.view?runId=31582&remote=true&reportName=GCT%20File%20GCP"}},"status":"POUR : succeeded in uploading all GCTs to Panorama","level 3":{"s3":{"url":"s3://proteomics.clue.io/psp/level3/LINCS_GCP_Plate24_annotated_minimized_2018-05-07_16-43-23_LVL3.gct"},"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate24_annotated_minimized_2018-05-07_16-43-23_LVL3.gct"}}}
18 Apr 2021 22:57:53,263 INFO : Resubmitting...
18 Apr 2021 22:57:53,264 INFO : Looking for existing job with name LINCS_GCP_Plate24_annotated_minimized_2018-05-07_16-43-23
18 Apr 2021 22:57:53,396 INFO : Job with name LINCS_GCP_Plate24_annotated_minimized_2018-05-07_16-43-23exists.
18 Apr 2021 22:57:53,396 INFO : Looking for existing job with name LINCS_GCP_Plate24_annotated_minimized_2018-05-07_16-43-23_2
18 Apr 2021 22:57:53,527 INFO : Job with name LINCS_GCP_Plate24_annotated_minimized_2018-05-07_16-43-23_2exists.
18 Apr 2021 22:57:53,527 INFO : Looking for existing job with name LINCS_GCP_Plate24_annotated_minimized_2018-05-07_16-43-23_3
18 Apr 2021 22:57:53,656 INFO : PSP job name: LINCS_GCP_Plate24_annotated_minimized_2018-05-07_16-43-23_3
18 Apr 2021 22:57:53,658 INFO : Sending JSON:
18 Apr 2021 22:57:53,658 INFO : {
  "level 4": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate24_annotated_minimized_2018-05-07_16-43-23_LVL4.gct"
  }},
  "assay": "GCP",
  "name": "LINCS_GCP_Plate24_annotated_minimized_2018-05-07_16-43-23_3",
  "config": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate24_annotated_minimized_2018-05-07_16-43-23.cfg"
  }},
  "level 2": {"panorama": {
    "method": "GET",
    "url": "https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate24_annotated_minimized_2018-05-07_16-43-23.gct"
  }},
  "level 3": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate24_annotated_minimized_2018-05-07_16-43-23_LVL3.gct"
  }}
}
18 Apr 2021 22:57:53,659 INFO : Sending POST request to https://api.clue.io/api/psp
18 Apr 2021 22:57:53,846 INFO : Response code - 200
18 Apr 2021 22:57:53,847 INFO : Response from server: {"name":"LINCS_GCP_Plate24_annotated_minimized_2018-05-07_16-43-23_3","assay":"GCP","status":"Waiting_To_Download","id":"607d1be15e18ad0011655fe9","created":"2021-04-19T05:57:53.734Z","last_modified":"2021-04-19T05:57:53.734Z","level 2":{"panorama":{"method":"GET","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate24_annotated_minimized_2018-05-07_16-43-23.gct"}},"level 3":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate24_annotated_minimized_2018-05-07_16-43-23_LVL3.gct"}},"level 4":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate24_annotated_minimized_2018-05-07_16-43-23_LVL4.gct"}},"config":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate24_annotated_minimized_2018-05-07_16-43-23.cfg"}}}
18 Apr 2021 22:57:53,847 INFO : Sent POST request to https://api.clue.io/api/psp
18 Apr 2021 22:57:53,849 INFO : Checking status of job 607d1be15e18ad0011655fe9
18 Apr 2021 22:57:53,981 INFO : Status: Waiting_To_Download
18 Apr 2021 22:58:13,983 INFO : Checking status of job 607d1be15e18ad0011655fe9
18 Apr 2021 22:58:21,914 INFO : Status: created LVL 3 GCT
18 Apr 2021 22:58:41,917 INFO : Checking status of job 607d1be15e18ad0011655fe9
18 Apr 2021 22:58:42,206 INFO : Status: created LVL 3 GCT
18 Apr 2021 22:59:02,208 INFO : Checking status of job 607d1be15e18ad0011655fe9
18 Apr 2021 22:59:02,582 INFO : Status: created LVL 3 GCT
18 Apr 2021 22:59:22,584 INFO : Checking status of job 607d1be15e18ad0011655fe9
18 Apr 2021 22:59:32,033 INFO : Status: created LVL 3 GCT
18 Apr 2021 22:59:52,037 INFO : Checking status of job 607d1be15e18ad0011655fe9
18 Apr 2021 22:59:52,320 INFO : Status: created LVL 3 GCT
18 Apr 2021 23:00:12,322 INFO : Checking status of job 607d1be15e18ad0011655fe9
18 Apr 2021 23:00:12,605 INFO : Status: created LVL 3 GCT
18 Apr 2021 23:00:32,608 INFO : Checking status of job 607d1be15e18ad0011655fe9
18 Apr 2021 23:00:42,166 INFO : Status: created LVL 3 GCT
18 Apr 2021 23:01:02,169 INFO : Checking status of job 607d1be15e18ad0011655fe9
18 Apr 2021 23:01:02,461 INFO : Status: created LVL 3 GCT
18 Apr 2021 23:01:22,464 INFO : Checking status of job 607d1be15e18ad0011655fe9
18 Apr 2021 23:01:22,849 INFO : Status: created LVL 3 GCT
18 Apr 2021 23:01:42,852 INFO : Checking status of job 607d1be15e18ad0011655fe9
18 Apr 2021 23:01:43,140 INFO : Status: created LVL 3 GCT
18 Apr 2021 23:02:03,143 INFO : Checking status of job 607d1be15e18ad0011655fe9
18 Apr 2021 23:02:03,432 INFO : Status: POUR : succeeded in uploading all GCTs to Panorama
18 Apr 2021 23:02:03,432 INFO : PSP job completed with status: POUR : succeeded in uploading all GCTs to Panorama
18 Apr 2021 23:02:03,432 INFO : Finished running LINCS PSP pipeline.
18 Apr 2021 23:02:03,432 INFO : Successfully completed task 'org.labkey.lincs.psp.LincsPspTask'