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Re-running LINCS pipeline for: LINCS_GCP_Plate45_annotated_minimized_2018-05-09_10-56-44

GCP

Job Status

Created: 2021-04-18 22:09:11
Modified: 2021-04-18 22:57:11
Email: vsharma@uw.edu
Status: COMPLETE
Info:
Description: Re-running LINCS pipeline for: LINCS_GCP_Plate45_annotated_minimized_2018-05-09_10-56-44
File Path: /data/labkey/files/LINCS/GCP/@files/LincsPSP_rerun_LINCS_GCP_Plate45_annotated_minimized_2018-05-09_10-56-44_2021-04-18_22-09-11.log
Files: LincsPSP_rerun_LINCS_GCP_Plate45_annotated_minimized_2018-05-09_10-56-44_2021-04-18_22-09-11.log
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Log File


18 Apr 2021 22:09:11,850 INFO : Re-running LINCS pipeline for:  LINCS_GCP_Plate45_annotated_minimized_2018-05-09_10-56-44
18 Apr 2021 22:09:11,852 INFO : =======================================
18 Apr 2021 22:23:41,247 INFO : Starting to run task 'org.labkey.lincs.cromwell.CromwellGctTask' at location 'webserver-high-priority'
18 Apr 2021 22:23:41,248 INFO : Starting task to create L2 GCT for LINCS_GCP_Plate45_annotated_minimized_2018-05-09_10-56-44.sky.zip
18 Apr 2021 22:23:41,253 INFO : Submitting job to http://m002.grid.gs.washington.edu:8000/api/workflows/v1
18 Apr 2021 22:23:41,280 INFO : Checking status of job at http://m002.grid.gs.washington.edu:8000/api/workflows/v1/716dfb42-ea41-4de0-aee3-1220f3e48b76/status
18 Apr 2021 22:24:01,299 INFO : Cromwell job status: Running
18 Apr 2021 22:25:01,355 INFO : Cromwell job status: Succeeded
18 Apr 2021 22:25:01,355 INFO : Cromwell job completed successfully
18 Apr 2021 22:25:01,357 INFO : Successfully completed task 'org.labkey.lincs.cromwell.CromwellGctTask'
18 Apr 2021 22:56:24,389 INFO : Starting to run task 'org.labkey.lincs.psp.LincsPspTask' at location 'webserver-high-priority'
18 Apr 2021 22:56:24,391 INFO : Running LINCS PSP pipeline for LINCS_GCP_Plate45_annotated_minimized_2018-05-09_10-56-44
18 Apr 2021 22:56:24,391 INFO : Resubmitting job for runId: 31704, name: LINCS_GCP_Plate45_annotated_minimized_2018-05-09_10-56-44
18 Apr 2021 22:56:24,391 INFO : Old job details: 
18 Apr 2021 22:56:24,391 INFO : Id: 92
18 Apr 2021 22:56:24,391 INFO : Pipeline job Id: 68217
18 Apr 2021 22:56:24,391 INFO : Run Id: 31704
18 Apr 2021 22:56:24,391 INFO : PSP Job Id: 5cfd5582344c151e38c98d98
18 Apr 2021 22:56:24,391 INFO : PSP Job name: LINCS_GCP_Plate45_annotated_minimized_2018-05-09_10-56-44
18 Apr 2021 22:56:24,391 INFO : PSP Job status: POUR : succeeded in uploading all GCTs to Panorama
18 Apr 2021 22:56:24,391 INFO : JSON: {"level 4":{"s3":{"url":"s3://proteomics.clue.io/psp/level4/LINCS_GCP_Plate45_annotated_minimized_2018-05-09_10-56-44_LVL4.gct"},"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate45_annotated_minimized_2018-05-09_10-56-44_LVL4.gct"}},"assay":"GCP","created":"2019-06-09T18:52:50.630Z","name":"LINCS_GCP_Plate45_annotated_minimized_2018-05-09_10-56-44","id":"5cfd5582344c151e38c98d98","last_modified":"2019-06-09T18:53:22.529Z","config":{"s3":{"url":"s3://proteomics.clue.io/psp/config/LINCS_GCP_Plate45_annotated_minimized_2018-05-09_10-56-44.cfg"},"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate45_annotated_minimized_2018-05-09_10-56-44.cfg"}},"level 2":{"s3":{"url":"s3://proteomics.clue.io/psp/level2/LINCS_GCP_Plate45_annotated_minimized_2018-05-09_10-56-44_LVL2.gct"},"panorama":{"method":"GET","url":"https://panoramaweb.org/lincs/LINCS/GCP/runGCTReportApi.view?runId=31704&remote=true&reportName=GCT%20File%20GCP"}},"status":"POUR : succeeded in uploading all GCTs to Panorama","level 3":{"s3":{"url":"s3://proteomics.clue.io/psp/level3/LINCS_GCP_Plate45_annotated_minimized_2018-05-09_10-56-44_LVL3.gct"},"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate45_annotated_minimized_2018-05-09_10-56-44_LVL3.gct"}}}
18 Apr 2021 22:56:24,391 INFO : Resubmitting...
18 Apr 2021 22:56:24,393 INFO : Looking for existing job with name LINCS_GCP_Plate45_annotated_minimized_2018-05-09_10-56-44
18 Apr 2021 22:56:24,528 INFO : Job with name LINCS_GCP_Plate45_annotated_minimized_2018-05-09_10-56-44exists.
18 Apr 2021 22:56:24,528 INFO : Looking for existing job with name LINCS_GCP_Plate45_annotated_minimized_2018-05-09_10-56-44_2
18 Apr 2021 22:56:24,659 INFO : PSP job name: LINCS_GCP_Plate45_annotated_minimized_2018-05-09_10-56-44_2
18 Apr 2021 22:56:24,659 INFO : Sending JSON:
18 Apr 2021 22:56:24,659 INFO : {
  "level 4": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate45_annotated_minimized_2018-05-09_10-56-44_LVL4.gct"
  }},
  "assay": "GCP",
  "name": "LINCS_GCP_Plate45_annotated_minimized_2018-05-09_10-56-44_2",
  "config": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate45_annotated_minimized_2018-05-09_10-56-44.cfg"
  }},
  "level 2": {"panorama": {
    "method": "GET",
    "url": "https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate45_annotated_minimized_2018-05-09_10-56-44.gct"
  }},
  "level 3": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate45_annotated_minimized_2018-05-09_10-56-44_LVL3.gct"
  }}
}
18 Apr 2021 22:56:24,662 INFO : Sending POST request to https://api.clue.io/api/psp
18 Apr 2021 22:56:24,915 INFO : Response code - 200
18 Apr 2021 22:56:24,915 INFO : Response from server: {"name":"LINCS_GCP_Plate45_annotated_minimized_2018-05-09_10-56-44_2","assay":"GCP","status":"Waiting_To_Download","id":"607d1b885e18ad0011655fe7","created":"2021-04-19T05:56:24.736Z","last_modified":"2021-04-19T05:56:24.736Z","level 2":{"panorama":{"method":"GET","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate45_annotated_minimized_2018-05-09_10-56-44.gct"}},"level 3":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate45_annotated_minimized_2018-05-09_10-56-44_LVL3.gct"}},"level 4":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate45_annotated_minimized_2018-05-09_10-56-44_LVL4.gct"}},"config":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate45_annotated_minimized_2018-05-09_10-56-44.cfg"}}}
18 Apr 2021 22:56:24,915 INFO : Sent POST request to https://api.clue.io/api/psp
18 Apr 2021 22:56:24,917 INFO : Checking status of job 607d1b885e18ad0011655fe7
18 Apr 2021 22:56:25,049 INFO : Status: Waiting_To_Download
18 Apr 2021 22:56:45,052 INFO : Checking status of job 607d1b885e18ad0011655fe7
18 Apr 2021 22:56:45,342 INFO : Status: created LVL 3 GCT
18 Apr 2021 22:57:05,350 INFO : Checking status of job 607d1b885e18ad0011655fe7
18 Apr 2021 22:57:11,780 INFO : Status: POUR : succeeded in uploading all GCTs to Panorama
18 Apr 2021 22:57:11,780 INFO : PSP job completed with status: POUR : succeeded in uploading all GCTs to Panorama
18 Apr 2021 22:57:11,780 INFO : Finished running LINCS PSP pipeline.
18 Apr 2021 22:57:11,781 INFO : Successfully completed task 'org.labkey.lincs.psp.LincsPspTask'