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Re-running LINCS pipeline for: LINCS_GCP_Plate35_annotated_minimized_2018-05-15_14-02-11

GCP

Job Status

Created: 2021-04-18 22:07:52
Modified: 2021-04-18 22:42:53
Email: vsharma@uw.edu
Status: COMPLETE
Info:
Description: Re-running LINCS pipeline for: LINCS_GCP_Plate35_annotated_minimized_2018-05-15_14-02-11
File Path: /data/labkey/files/LINCS/GCP/@files/LincsPSP_rerun_LINCS_GCP_Plate35_annotated_minimized_2018-05-15_14-02-11_2021-04-18_22-07-51.log
Files: LincsPSP_rerun_LINCS_GCP_Plate35_annotated_minimized_2018-05-15_14-02-11_2021-04-18_22-07-51.log
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Log File


18 Apr 2021 22:07:52,012 INFO : Re-running LINCS pipeline for:  LINCS_GCP_Plate35_annotated_minimized_2018-05-15_14-02-11
18 Apr 2021 22:07:52,013 INFO : =======================================
18 Apr 2021 22:10:35,217 INFO : Starting to run task 'org.labkey.lincs.cromwell.CromwellGctTask' at location 'webserver-high-priority'
18 Apr 2021 22:10:35,217 INFO : Starting task to create L2 GCT for LINCS_GCP_Plate35_annotated_minimized_2018-05-15_14-02-11.sky.zip
18 Apr 2021 22:10:35,225 INFO : Submitting job to http://m002.grid.gs.washington.edu:8000/api/workflows/v1
18 Apr 2021 22:10:35,252 INFO : Checking status of job at http://m002.grid.gs.washington.edu:8000/api/workflows/v1/72cdc7a3-6f9d-424e-a615-2ea9561afadf/status
18 Apr 2021 22:10:55,273 INFO : Cromwell job status: Running
18 Apr 2021 22:11:35,311 INFO : Cromwell job status: Succeeded
18 Apr 2021 22:11:45,268 INFO : Cromwell job completed successfully
18 Apr 2021 22:11:45,269 INFO : Successfully completed task 'org.labkey.lincs.cromwell.CromwellGctTask'
18 Apr 2021 22:38:26,953 INFO : Starting to run task 'org.labkey.lincs.psp.LincsPspTask' at location 'webserver-high-priority'
18 Apr 2021 22:38:26,955 INFO : Running LINCS PSP pipeline for LINCS_GCP_Plate35_annotated_minimized_2018-05-15_14-02-11
18 Apr 2021 22:38:26,955 INFO : Resubmitting job for runId: 32035, name: LINCS_GCP_Plate35_annotated_minimized_2018-05-15_14-02-11
18 Apr 2021 22:38:26,955 INFO : Old job details: 
18 Apr 2021 22:38:26,955 INFO : Id: 85
18 Apr 2021 22:38:26,955 INFO : Pipeline job Id: 68210
18 Apr 2021 22:38:26,955 INFO : Run Id: 32035
18 Apr 2021 22:38:26,956 INFO : PSP Job Id: 5cfd5461344c151e38c98d91
18 Apr 2021 22:38:26,956 INFO : PSP Job name: LINCS_GCP_Plate35_annotated_minimized_2018-05-15_14-02-11
18 Apr 2021 22:38:26,956 INFO : PSP Job status: POUR : succeeded in uploading all GCTs to Panorama
18 Apr 2021 22:38:26,956 INFO : JSON: {"level 4":{"s3":{"url":"s3://proteomics.clue.io/psp/level4/LINCS_GCP_Plate35_annotated_minimized_2018-05-15_14-02-11_LVL4.gct"},"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate35_annotated_minimized_2018-05-15_14-02-11_LVL4.gct"}},"assay":"GCP","created":"2019-06-09T18:48:01.121Z","name":"LINCS_GCP_Plate35_annotated_minimized_2018-05-15_14-02-11","id":"5cfd5461344c151e38c98d91","last_modified":"2019-06-09T18:48:28.974Z","config":{"s3":{"url":"s3://proteomics.clue.io/psp/config/LINCS_GCP_Plate35_annotated_minimized_2018-05-15_14-02-11.cfg"},"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate35_annotated_minimized_2018-05-15_14-02-11.cfg"}},"level 2":{"s3":{"url":"s3://proteomics.clue.io/psp/level2/LINCS_GCP_Plate35_annotated_minimized_2018-05-15_14-02-11_LVL2.gct"},"panorama":{"method":"GET","url":"https://panoramaweb.org/lincs/LINCS/GCP/runGCTReportApi.view?runId=32035&remote=true&reportName=GCT%20File%20GCP"}},"status":"POUR : succeeded in uploading all GCTs to Panorama","level 3":{"s3":{"url":"s3://proteomics.clue.io/psp/level3/LINCS_GCP_Plate35_annotated_minimized_2018-05-15_14-02-11_LVL3.gct"},"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate35_annotated_minimized_2018-05-15_14-02-11_LVL3.gct"}}}
18 Apr 2021 22:38:26,956 INFO : Resubmitting...
18 Apr 2021 22:38:26,958 INFO : Looking for existing job with name LINCS_GCP_Plate35_annotated_minimized_2018-05-15_14-02-11
18 Apr 2021 22:38:27,390 INFO : Job with name LINCS_GCP_Plate35_annotated_minimized_2018-05-15_14-02-11exists.
18 Apr 2021 22:38:27,390 INFO : Looking for existing job with name LINCS_GCP_Plate35_annotated_minimized_2018-05-15_14-02-11_2
18 Apr 2021 22:38:27,523 INFO : PSP job name: LINCS_GCP_Plate35_annotated_minimized_2018-05-15_14-02-11_2
18 Apr 2021 22:38:27,524 INFO : Sending JSON:
18 Apr 2021 22:38:27,524 INFO : {
  "level 4": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate35_annotated_minimized_2018-05-15_14-02-11_LVL4.gct"
  }},
  "assay": "GCP",
  "name": "LINCS_GCP_Plate35_annotated_minimized_2018-05-15_14-02-11_2",
  "config": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate35_annotated_minimized_2018-05-15_14-02-11.cfg"
  }},
  "level 2": {"panorama": {
    "method": "GET",
    "url": "https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate35_annotated_minimized_2018-05-15_14-02-11.gct"
  }},
  "level 3": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate35_annotated_minimized_2018-05-15_14-02-11_LVL3.gct"
  }}
}
18 Apr 2021 22:38:27,525 INFO : Sending POST request to https://api.clue.io/api/psp
18 Apr 2021 22:38:27,716 INFO : Response code - 200
18 Apr 2021 22:38:27,716 INFO : Response from server: {"name":"LINCS_GCP_Plate35_annotated_minimized_2018-05-15_14-02-11_2","assay":"GCP","status":"Waiting_To_Download","id":"607d17535e18ad0011655fda","created":"2021-04-19T05:38:27.604Z","last_modified":"2021-04-19T05:38:27.604Z","level 2":{"panorama":{"method":"GET","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate35_annotated_minimized_2018-05-15_14-02-11.gct"}},"level 3":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate35_annotated_minimized_2018-05-15_14-02-11_LVL3.gct"}},"level 4":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate35_annotated_minimized_2018-05-15_14-02-11_LVL4.gct"}},"config":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate35_annotated_minimized_2018-05-15_14-02-11.cfg"}}}
18 Apr 2021 22:38:27,717 INFO : Sent POST request to https://api.clue.io/api/psp
18 Apr 2021 22:38:27,718 INFO : Checking status of job 607d17535e18ad0011655fda
18 Apr 2021 22:38:27,853 INFO : Status: Waiting_To_Download
18 Apr 2021 22:38:47,855 INFO : Checking status of job 607d17535e18ad0011655fda
18 Apr 2021 22:38:48,145 INFO : Status: created LVL2 GCT
18 Apr 2021 22:39:08,147 INFO : Checking status of job 607d17535e18ad0011655fda
18 Apr 2021 22:39:08,437 INFO : Status: created LVL2 GCT
18 Apr 2021 22:39:28,440 INFO : Checking status of job 607d17535e18ad0011655fda
18 Apr 2021 22:39:28,732 INFO : Status: created LVL2 GCT
18 Apr 2021 22:39:48,734 INFO : Checking status of job 607d17535e18ad0011655fda
18 Apr 2021 22:39:49,023 INFO : Status: created LVL2 GCT
18 Apr 2021 22:40:09,025 INFO : Checking status of job 607d17535e18ad0011655fda
18 Apr 2021 22:40:09,316 INFO : Status: created LVL2 GCT
18 Apr 2021 22:40:29,319 INFO : Checking status of job 607d17535e18ad0011655fda
18 Apr 2021 22:40:29,613 INFO : Status: created LVL2 GCT
18 Apr 2021 22:40:49,615 INFO : Checking status of job 607d17535e18ad0011655fda
18 Apr 2021 22:40:49,908 INFO : Status: created LVL2 GCT
18 Apr 2021 22:41:09,909 INFO : Checking status of job 607d17535e18ad0011655fda
18 Apr 2021 22:41:10,199 INFO : Status: created LVL2 GCT
18 Apr 2021 22:41:30,201 INFO : Checking status of job 607d17535e18ad0011655fda
18 Apr 2021 22:41:30,494 INFO : Status: created LVL2 GCT
18 Apr 2021 22:41:50,496 INFO : Checking status of job 607d17535e18ad0011655fda
18 Apr 2021 22:41:50,785 INFO : Status: created LVL2 GCT
18 Apr 2021 22:42:10,787 INFO : Checking status of job 607d17535e18ad0011655fda
18 Apr 2021 22:42:11,075 INFO : Status: created LVL2 GCT
18 Apr 2021 22:42:31,078 INFO : Checking status of job 607d17535e18ad0011655fda
18 Apr 2021 22:42:32,763 INFO : Status: created LVL 3 GCT
18 Apr 2021 22:42:52,764 INFO : Checking status of job 607d17535e18ad0011655fda
18 Apr 2021 22:42:53,059 INFO : Status: POUR : succeeded in uploading all GCTs to Panorama
18 Apr 2021 22:42:53,059 INFO : PSP job completed with status: POUR : succeeded in uploading all GCTs to Panorama
18 Apr 2021 22:42:53,059 INFO : Finished running LINCS PSP pipeline.
18 Apr 2021 22:42:53,059 INFO : Successfully completed task 'org.labkey.lincs.psp.LincsPspTask'