• Sign In
  1. Pipeline Jobs

Re-running LINCS pipeline for: LINCS_GCP_Plate73_annotated_minimized_2019-04-16_11-45-08

GCP

Job Status

Created: 2021-04-18 21:28:46
Modified: 2021-04-18 22:03:43
Email: vsharma@uw.edu
Status: COMPLETE
Info:
Description: Re-running LINCS pipeline for: LINCS_GCP_Plate73_annotated_minimized_2019-04-16_11-45-08
File Path: /data/labkey/files/LINCS/GCP/@files/LincsPSP_rerun_LINCS_GCP_Plate73_annotated_minimized_2019-04-16_11-45-08_2021-04-18_21-28-46.log
Files: LincsPSP_rerun_LINCS_GCP_Plate73_annotated_minimized_2019-04-16_11-45-08_2021-04-18_21-28-46.log
Show Grid Browse Files

Log File


18 Apr 2021 21:28:46,660 INFO : Re-running LINCS pipeline for:  LINCS_GCP_Plate73_annotated_minimized_2019-04-16_11-45-08
18 Apr 2021 21:28:46,663 INFO : =======================================
18 Apr 2021 21:42:19,778 INFO : Starting to run task 'org.labkey.lincs.cromwell.CromwellGctTask' at location 'webserver-high-priority'
18 Apr 2021 21:42:19,780 INFO : Starting task to create L2 GCT for LINCS_GCP_Plate73_annotated_minimized_2019-04-16_11-45-08.sky.zip
18 Apr 2021 21:42:19,785 INFO : Submitting job to http://m002.grid.gs.washington.edu:8000/api/workflows/v1
18 Apr 2021 21:42:19,810 INFO : Checking status of job at http://m002.grid.gs.washington.edu:8000/api/workflows/v1/a39a7873-a600-4941-bb5b-eebc69ae7426/status
18 Apr 2021 21:42:39,830 INFO : Cromwell job status: Submitted
18 Apr 2021 21:42:59,846 INFO : Cromwell job status: Running
18 Apr 2021 21:43:39,888 INFO : Cromwell job status: Succeeded
18 Apr 2021 21:43:39,888 INFO : Cromwell job completed successfully
18 Apr 2021 21:43:39,890 INFO : Successfully completed task 'org.labkey.lincs.cromwell.CromwellGctTask'
18 Apr 2021 22:03:02,319 INFO : Starting to run task 'org.labkey.lincs.psp.LincsPspTask' at location 'webserver-high-priority'
18 Apr 2021 22:03:02,321 INFO : Running LINCS PSP pipeline for LINCS_GCP_Plate73_annotated_minimized_2019-04-16_11-45-08
18 Apr 2021 22:03:02,321 INFO : Resubmitting job for runId: 61790, name: LINCS_GCP_Plate73_annotated_minimized_2019-04-16_11-45-08
18 Apr 2021 22:03:02,321 INFO : Old job details: 
18 Apr 2021 22:03:02,321 INFO : Id: 110
18 Apr 2021 22:03:02,321 INFO : Pipeline job Id: 68235
18 Apr 2021 22:03:02,321 INFO : Run Id: 61790
18 Apr 2021 22:03:02,322 INFO : PSP Job Id: 5cfd586b344c151e38c98daa
18 Apr 2021 22:03:02,322 INFO : PSP Job name: LINCS_GCP_Plate73_annotated_minimized_2019-04-16_11-45-08
18 Apr 2021 22:03:02,322 INFO : PSP Job status: POUR : succeeded in uploading all GCTs to Panorama
18 Apr 2021 22:03:02,322 INFO : JSON: {"level 4":{"s3":{"url":"s3://proteomics.clue.io/psp/level4/LINCS_GCP_Plate73_annotated_minimized_2019-04-16_11-45-08_LVL4.gct"},"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate73_annotated_minimized_2019-04-16_11-45-08_LVL4.gct"}},"assay":"GCP","created":"2019-06-09T19:05:15.080Z","name":"LINCS_GCP_Plate73_annotated_minimized_2019-04-16_11-45-08","id":"5cfd586b344c151e38c98daa","last_modified":"2019-06-09T19:05:44.604Z","config":{"s3":{"url":"s3://proteomics.clue.io/psp/config/LINCS_GCP_Plate73_annotated_minimized_2019-04-16_11-45-08.cfg"},"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate73_annotated_minimized_2019-04-16_11-45-08.cfg"}},"level 2":{"s3":{"url":"s3://proteomics.clue.io/psp/level2/LINCS_GCP_Plate73_annotated_minimized_2019-04-16_11-45-08_LVL2.gct"},"panorama":{"method":"GET","url":"https://panoramaweb.org/lincs/LINCS/GCP/runGCTReportApi.view?runId=61790&remote=true&reportName=GCT%20File%20GCP"}},"status":"POUR : succeeded in uploading all GCTs to Panorama","level 3":{"s3":{"url":"s3://proteomics.clue.io/psp/level3/LINCS_GCP_Plate73_annotated_minimized_2019-04-16_11-45-08_LVL3.gct"},"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate73_annotated_minimized_2019-04-16_11-45-08_LVL3.gct"}}}
18 Apr 2021 22:03:02,322 INFO : Resubmitting...
18 Apr 2021 22:03:02,323 INFO : Looking for existing job with name LINCS_GCP_Plate73_annotated_minimized_2019-04-16_11-45-08
18 Apr 2021 22:03:02,487 INFO : Job with name LINCS_GCP_Plate73_annotated_minimized_2019-04-16_11-45-08exists.
18 Apr 2021 22:03:02,487 INFO : Looking for existing job with name LINCS_GCP_Plate73_annotated_minimized_2019-04-16_11-45-08_2
18 Apr 2021 22:03:02,625 INFO : PSP job name: LINCS_GCP_Plate73_annotated_minimized_2019-04-16_11-45-08_2
18 Apr 2021 22:03:02,626 INFO : Sending JSON:
18 Apr 2021 22:03:02,626 INFO : {
  "level 4": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate73_annotated_minimized_2019-04-16_11-45-08_LVL4.gct"
  }},
  "assay": "GCP",
  "name": "LINCS_GCP_Plate73_annotated_minimized_2019-04-16_11-45-08_2",
  "config": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate73_annotated_minimized_2019-04-16_11-45-08.cfg"
  }},
  "level 2": {"panorama": {
    "method": "GET",
    "url": "https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate73_annotated_minimized_2019-04-16_11-45-08.gct"
  }},
  "level 3": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate73_annotated_minimized_2019-04-16_11-45-08_LVL3.gct"
  }}
}
18 Apr 2021 22:03:02,628 INFO : Sending POST request to https://api.clue.io/api/psp
18 Apr 2021 22:03:02,940 INFO : Response code - 200
18 Apr 2021 22:03:02,940 INFO : Response from server: {"name":"LINCS_GCP_Plate73_annotated_minimized_2019-04-16_11-45-08_2","assay":"GCP","status":"Waiting_To_Download","id":"607d0f0619867800115117a6","created":"2021-04-19T05:03:02.710Z","last_modified":"2021-04-19T05:03:02.710Z","level 2":{"panorama":{"method":"GET","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate73_annotated_minimized_2019-04-16_11-45-08.gct"}},"level 3":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate73_annotated_minimized_2019-04-16_11-45-08_LVL3.gct"}},"level 4":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate73_annotated_minimized_2019-04-16_11-45-08_LVL4.gct"}},"config":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate73_annotated_minimized_2019-04-16_11-45-08.cfg"}}}
18 Apr 2021 22:03:02,940 INFO : Sent POST request to https://api.clue.io/api/psp
18 Apr 2021 22:03:02,942 INFO : Checking status of job 607d0f0619867800115117a6
18 Apr 2021 22:03:03,080 INFO : Status: Waiting_To_Download
18 Apr 2021 22:03:23,082 INFO : Checking status of job 607d0f0619867800115117a6
18 Apr 2021 22:03:23,376 INFO : Status: created LVL 3 GCT
18 Apr 2021 22:03:43,379 INFO : Checking status of job 607d0f0619867800115117a6
18 Apr 2021 22:03:43,754 INFO : Status: POUR : succeeded in uploading all GCTs to Panorama
18 Apr 2021 22:03:43,754 INFO : PSP job completed with status: POUR : succeeded in uploading all GCTs to Panorama
18 Apr 2021 22:03:43,754 INFO : Finished running LINCS PSP pipeline.
18 Apr 2021 22:03:43,754 INFO : Successfully completed task 'org.labkey.lincs.psp.LincsPspTask'