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Re-running LINCS pipeline for: LINCS_GCP_Plate75_annotated_minimized_2019-04-16_13-40-09

GCP

Job Status

Created: 2021-04-18 21:28:20
Modified: 2021-04-18 22:02:12
Email: vsharma@uw.edu
Status: COMPLETE
Info:
Description: Re-running LINCS pipeline for: LINCS_GCP_Plate75_annotated_minimized_2019-04-16_13-40-09
File Path: /data/labkey/files/LINCS/GCP/@files/LincsPSP_rerun_LINCS_GCP_Plate75_annotated_minimized_2019-04-16_13-40-09_2021-04-18_21-28-19.log
Files: LincsPSP_rerun_LINCS_GCP_Plate75_annotated_minimized_2019-04-16_13-40-09_2021-04-18_21-28-19.log
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Log File


18 Apr 2021 21:28:20,839 INFO : Re-running LINCS pipeline for:  LINCS_GCP_Plate75_annotated_minimized_2019-04-16_13-40-09
18 Apr 2021 21:28:20,840 INFO : =======================================
18 Apr 2021 21:35:18,083 INFO : Starting to run task 'org.labkey.lincs.cromwell.CromwellGctTask' at location 'webserver-high-priority'
18 Apr 2021 21:35:18,083 INFO : Starting task to create L2 GCT for LINCS_GCP_Plate75_annotated_minimized_2019-04-16_13-40-09.sky.zip
18 Apr 2021 21:35:18,089 INFO : Submitting job to http://m002.grid.gs.washington.edu:8000/api/workflows/v1
18 Apr 2021 21:35:18,114 INFO : Checking status of job at http://m002.grid.gs.washington.edu:8000/api/workflows/v1/d482bad9-1b00-434c-a1d9-04a1e9ddd342/status
18 Apr 2021 21:35:38,133 INFO : Cromwell job status: Submitted
18 Apr 2021 21:35:58,157 INFO : Cromwell job status: Running
18 Apr 2021 21:36:38,197 INFO : Cromwell job status: Succeeded
18 Apr 2021 21:36:38,197 INFO : Cromwell job completed successfully
18 Apr 2021 21:36:38,198 INFO : Successfully completed task 'org.labkey.lincs.cromwell.CromwellGctTask'
18 Apr 2021 21:57:37,335 INFO : Starting to run task 'org.labkey.lincs.psp.LincsPspTask' at location 'webserver-high-priority'
18 Apr 2021 21:57:37,337 INFO : Running LINCS PSP pipeline for LINCS_GCP_Plate75_annotated_minimized_2019-04-16_13-40-09
18 Apr 2021 21:57:37,338 INFO : Resubmitting job for runId: 61798, name: LINCS_GCP_Plate75_annotated_minimized_2019-04-16_13-40-09
18 Apr 2021 21:57:37,338 INFO : Old job details: 
18 Apr 2021 21:57:37,338 INFO : Id: 112
18 Apr 2021 21:57:37,338 INFO : Pipeline job Id: 68237
18 Apr 2021 21:57:37,338 INFO : Run Id: 61798
18 Apr 2021 21:57:37,338 INFO : PSP Job Id: 5cfd58bd344c151e38c98dac
18 Apr 2021 21:57:37,338 INFO : PSP Job name: LINCS_GCP_Plate75_annotated_minimized_2019-04-16_13-40-09
18 Apr 2021 21:57:37,338 INFO : PSP Job status: POUR : succeeded in uploading all GCTs to Panorama
18 Apr 2021 21:57:37,338 INFO : JSON: {"level 4":{"s3":{"url":"s3://proteomics.clue.io/psp/level4/LINCS_GCP_Plate75_annotated_minimized_2019-04-16_13-40-09_LVL4.gct"},"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate75_annotated_minimized_2019-04-16_13-40-09_LVL4.gct"}},"assay":"GCP","created":"2019-06-09T19:06:37.782Z","name":"LINCS_GCP_Plate75_annotated_minimized_2019-04-16_13-40-09","id":"5cfd58bd344c151e38c98dac","last_modified":"2019-06-09T19:07:10.090Z","config":{"s3":{"url":"s3://proteomics.clue.io/psp/config/LINCS_GCP_Plate75_annotated_minimized_2019-04-16_13-40-09.cfg"},"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate75_annotated_minimized_2019-04-16_13-40-09.cfg"}},"level 2":{"s3":{"url":"s3://proteomics.clue.io/psp/level2/LINCS_GCP_Plate75_annotated_minimized_2019-04-16_13-40-09_LVL2.gct"},"panorama":{"method":"GET","url":"https://panoramaweb.org/lincs/LINCS/GCP/runGCTReportApi.view?runId=61798&remote=true&reportName=GCT%20File%20GCP"}},"status":"POUR : succeeded in uploading all GCTs to Panorama","level 3":{"s3":{"url":"s3://proteomics.clue.io/psp/level3/LINCS_GCP_Plate75_annotated_minimized_2019-04-16_13-40-09_LVL3.gct"},"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate75_annotated_minimized_2019-04-16_13-40-09_LVL3.gct"}}}
18 Apr 2021 21:57:37,338 INFO : Resubmitting...
18 Apr 2021 21:57:37,340 INFO : Looking for existing job with name LINCS_GCP_Plate75_annotated_minimized_2019-04-16_13-40-09
18 Apr 2021 21:57:37,475 INFO : Job with name LINCS_GCP_Plate75_annotated_minimized_2019-04-16_13-40-09exists.
18 Apr 2021 21:57:37,475 INFO : Looking for existing job with name LINCS_GCP_Plate75_annotated_minimized_2019-04-16_13-40-09_2
18 Apr 2021 21:57:37,609 INFO : PSP job name: LINCS_GCP_Plate75_annotated_minimized_2019-04-16_13-40-09_2
18 Apr 2021 21:57:37,610 INFO : Sending JSON:
18 Apr 2021 21:57:37,610 INFO : {
  "level 4": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate75_annotated_minimized_2019-04-16_13-40-09_LVL4.gct"
  }},
  "assay": "GCP",
  "name": "LINCS_GCP_Plate75_annotated_minimized_2019-04-16_13-40-09_2",
  "config": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate75_annotated_minimized_2019-04-16_13-40-09.cfg"
  }},
  "level 2": {"panorama": {
    "method": "GET",
    "url": "https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate75_annotated_minimized_2019-04-16_13-40-09.gct"
  }},
  "level 3": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate75_annotated_minimized_2019-04-16_13-40-09_LVL3.gct"
  }}
}
18 Apr 2021 21:57:37,612 INFO : Sending POST request to https://api.clue.io/api/psp
18 Apr 2021 21:57:37,807 INFO : Response code - 200
18 Apr 2021 21:57:37,807 INFO : Response from server: {"name":"LINCS_GCP_Plate75_annotated_minimized_2019-04-16_13-40-09_2","assay":"GCP","status":"Waiting_To_Download","id":"607d0dc119867800115117a2","created":"2021-04-19T04:57:37.690Z","last_modified":"2021-04-19T04:57:37.690Z","level 2":{"panorama":{"method":"GET","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate75_annotated_minimized_2019-04-16_13-40-09.gct"}},"level 3":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate75_annotated_minimized_2019-04-16_13-40-09_LVL3.gct"}},"level 4":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate75_annotated_minimized_2019-04-16_13-40-09_LVL4.gct"}},"config":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate75_annotated_minimized_2019-04-16_13-40-09.cfg"}}}
18 Apr 2021 21:57:37,808 INFO : Sent POST request to https://api.clue.io/api/psp
18 Apr 2021 21:57:37,809 INFO : Checking status of job 607d0dc119867800115117a2
18 Apr 2021 21:57:37,944 INFO : Status: Waiting_To_Download
18 Apr 2021 21:57:57,946 INFO : Checking status of job 607d0dc119867800115117a2
18 Apr 2021 21:57:58,314 INFO : Status: created LVL 3 GCT
18 Apr 2021 21:58:18,316 INFO : Checking status of job 607d0dc119867800115117a2
18 Apr 2021 21:58:18,602 INFO : Status: created LVL 3 GCT
18 Apr 2021 21:58:38,604 INFO : Checking status of job 607d0dc119867800115117a2
18 Apr 2021 21:58:47,403 INFO : Status: created LVL 3 GCT
18 Apr 2021 21:59:07,405 INFO : Checking status of job 607d0dc119867800115117a2
18 Apr 2021 21:59:07,691 INFO : Status: created LVL 3 GCT
18 Apr 2021 21:59:27,693 INFO : Checking status of job 607d0dc119867800115117a2
18 Apr 2021 21:59:28,065 INFO : Status: created LVL 3 GCT
18 Apr 2021 21:59:48,071 INFO : Checking status of job 607d0dc119867800115117a2
18 Apr 2021 21:59:48,351 INFO : Status: created LVL 3 GCT
18 Apr 2021 22:00:08,353 INFO : Checking status of job 607d0dc119867800115117a2
18 Apr 2021 22:00:08,645 INFO : Status: created LVL 3 GCT
18 Apr 2021 22:00:28,647 INFO : Checking status of job 607d0dc119867800115117a2
18 Apr 2021 22:00:28,937 INFO : Status: created LVL 3 GCT
18 Apr 2021 22:00:48,940 INFO : Checking status of job 607d0dc119867800115117a2
18 Apr 2021 22:00:49,351 INFO : Status: created LVL 3 GCT
18 Apr 2021 22:01:09,354 INFO : Checking status of job 607d0dc119867800115117a2
18 Apr 2021 22:01:09,647 INFO : Status: created LVL 3 GCT
18 Apr 2021 22:01:29,649 INFO : Checking status of job 607d0dc119867800115117a2
18 Apr 2021 22:01:29,938 INFO : Status: created LVL 3 GCT
18 Apr 2021 22:01:49,940 INFO : Checking status of job 607d0dc119867800115117a2
18 Apr 2021 22:01:52,149 INFO : Status: created LVL 4 GCT
18 Apr 2021 22:02:12,151 INFO : Checking status of job 607d0dc119867800115117a2
18 Apr 2021 22:02:12,524 INFO : Status: POUR : succeeded in uploading all GCTs to Panorama
18 Apr 2021 22:02:12,525 INFO : PSP job completed with status: POUR : succeeded in uploading all GCTs to Panorama
18 Apr 2021 22:02:12,525 INFO : Finished running LINCS PSP pipeline.
18 Apr 2021 22:02:12,525 INFO : Successfully completed task 'org.labkey.lincs.psp.LincsPspTask'