• Sign In
  1. Pipeline Jobs

Re-running LINCS pipeline for: LINCS_GCP_Plate78_annotated_minimized_2019-08-14_12-00-49

GCP

Job Status

Created: 2021-04-18 21:26:57
Modified: 2021-04-18 21:49:35
Email: vsharma@uw.edu
Status: COMPLETE
Info:
Description: Re-running LINCS pipeline for: LINCS_GCP_Plate78_annotated_minimized_2019-08-14_12-00-49
File Path: /data/labkey/files/LINCS/GCP/@files/LincsPSP_rerun_LINCS_GCP_Plate78_annotated_minimized_2019-08-14_12-00-49_2021-04-18_21-26-56.log
Files: LincsPSP_rerun_LINCS_GCP_Plate78_annotated_minimized_2019-08-14_12-00-49_2021-04-18_21-26-56.log
Show Grid Browse Files

Log File


18 Apr 2021 21:26:57,664 INFO : Re-running LINCS pipeline for:  LINCS_GCP_Plate78_annotated_minimized_2019-08-14_12-00-49
18 Apr 2021 21:26:57,665 INFO : =======================================
18 Apr 2021 21:28:20,907 INFO : Starting to run task 'org.labkey.lincs.cromwell.CromwellGctTask' at location 'webserver-high-priority'
18 Apr 2021 21:28:20,908 INFO : Starting task to create L2 GCT for LINCS_GCP_Plate78_annotated_minimized_2019-08-14_12-00-49.sky.zip
18 Apr 2021 21:28:20,914 INFO : Submitting job to http://m002.grid.gs.washington.edu:8000/api/workflows/v1
18 Apr 2021 21:28:20,946 INFO : Checking status of job at http://m002.grid.gs.washington.edu:8000/api/workflows/v1/e72c38ea-bd56-425b-b168-76ee3e7af318/status
18 Apr 2021 21:28:40,967 INFO : Cromwell job status: Submitted
18 Apr 2021 21:29:00,987 INFO : Cromwell job status: Running
18 Apr 2021 21:29:41,032 INFO : Cromwell job status: Succeeded
18 Apr 2021 21:29:41,032 INFO : Cromwell job completed successfully
18 Apr 2021 21:29:41,033 INFO : Successfully completed task 'org.labkey.lincs.cromwell.CromwellGctTask'
18 Apr 2021 21:45:01,940 INFO : Starting to run task 'org.labkey.lincs.psp.LincsPspTask' at location 'webserver-high-priority'
18 Apr 2021 21:45:01,942 INFO : Running LINCS PSP pipeline for LINCS_GCP_Plate78_annotated_minimized_2019-08-14_12-00-49
18 Apr 2021 21:45:01,942 INFO : Resubmitting job for runId: 72748, name: LINCS_GCP_Plate78_annotated_minimized_2019-08-14_12-00-49
18 Apr 2021 21:45:01,942 INFO : Old job details: 
18 Apr 2021 21:45:01,942 INFO : Id: 151
18 Apr 2021 21:45:01,942 INFO : Pipeline job Id: 73272
18 Apr 2021 21:45:01,942 INFO : Run Id: 72748
18 Apr 2021 21:45:01,942 INFO : PSP Job Id: 5d5471ea544166e8be584f24
18 Apr 2021 21:45:01,942 INFO : PSP Job name: LINCS_GCP_Plate78_annotated_minimized_2019-08-14_12-00-49_2
18 Apr 2021 21:45:01,942 INFO : PSP Job status: POUR : succeeded in uploading all GCTs to Panorama
18 Apr 2021 21:45:01,943 INFO : JSON: {"level 4":{"s3":{"url":"s3://proteomics.clue.io/psp/level4/LINCS_GCP_Plate78_annotated_minimized_2019-08-14_12-00-49_2_LVL4.gct"},"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate78_annotated_minimized_2019-08-14_12-00-49_LVL4.gct"}},"assay":"GCP","created":"2019-08-14T20:41:14.017Z","name":"LINCS_GCP_Plate78_annotated_minimized_2019-08-14_12-00-49_2","id":"5d5471ea544166e8be584f24","last_modified":"2019-08-14T20:44:22.081Z","config":{"s3":{"url":"s3://proteomics.clue.io/psp/config/LINCS_GCP_Plate78_annotated_minimized_2019-08-14_12-00-49_2.cfg"},"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate78_annotated_minimized_2019-08-14_12-00-49.cfg"}},"level 2":{"s3":{"url":"s3://proteomics.clue.io/psp/level2/LINCS_GCP_Plate78_annotated_minimized_2019-08-14_12-00-49_2_LVL2.gct"},"panorama":{"method":"GET","url":"https://panoramaweb.org/lincs/LINCS/GCP/runGCTReportApi.view?runId=72748&remote=true&reportName=GCT%20File%20GCP"}},"status":"POUR : succeeded in uploading all GCTs to Panorama","level 3":{"s3":{"url":"s3://proteomics.clue.io/psp/level3/LINCS_GCP_Plate78_annotated_minimized_2019-08-14_12-00-49_2_LVL3.gct"},"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate78_annotated_minimized_2019-08-14_12-00-49_LVL3.gct"}}}
18 Apr 2021 21:45:01,943 INFO : Resubmitting...
18 Apr 2021 21:45:01,944 INFO : Looking for existing job with name LINCS_GCP_Plate78_annotated_minimized_2019-08-14_12-00-49
18 Apr 2021 21:45:02,285 INFO : Job with name LINCS_GCP_Plate78_annotated_minimized_2019-08-14_12-00-49exists.
18 Apr 2021 21:45:02,285 INFO : Looking for existing job with name LINCS_GCP_Plate78_annotated_minimized_2019-08-14_12-00-49_2
18 Apr 2021 21:45:02,425 INFO : Job with name LINCS_GCP_Plate78_annotated_minimized_2019-08-14_12-00-49_2exists.
18 Apr 2021 21:45:02,425 INFO : Looking for existing job with name LINCS_GCP_Plate78_annotated_minimized_2019-08-14_12-00-49_3
18 Apr 2021 21:45:02,562 INFO : PSP job name: LINCS_GCP_Plate78_annotated_minimized_2019-08-14_12-00-49_3
18 Apr 2021 21:45:02,563 INFO : Sending JSON:
18 Apr 2021 21:45:02,563 INFO : {
  "level 4": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate78_annotated_minimized_2019-08-14_12-00-49_LVL4.gct"
  }},
  "assay": "GCP",
  "name": "LINCS_GCP_Plate78_annotated_minimized_2019-08-14_12-00-49_3",
  "config": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate78_annotated_minimized_2019-08-14_12-00-49.cfg"
  }},
  "level 2": {"panorama": {
    "method": "GET",
    "url": "https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate78_annotated_minimized_2019-08-14_12-00-49.gct"
  }},
  "level 3": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate78_annotated_minimized_2019-08-14_12-00-49_LVL3.gct"
  }}
}
18 Apr 2021 21:45:02,564 INFO : Sending POST request to https://api.clue.io/api/psp
18 Apr 2021 21:45:02,760 INFO : Response code - 200
18 Apr 2021 21:45:02,760 INFO : Response from server: {"name":"LINCS_GCP_Plate78_annotated_minimized_2019-08-14_12-00-49_3","assay":"GCP","status":"Waiting_To_Download","id":"607d0ace5e18ad0011655fb2","created":"2021-04-19T04:45:02.645Z","last_modified":"2021-04-19T04:45:02.645Z","level 2":{"panorama":{"method":"GET","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate78_annotated_minimized_2019-08-14_12-00-49.gct"}},"level 3":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate78_annotated_minimized_2019-08-14_12-00-49_LVL3.gct"}},"level 4":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate78_annotated_minimized_2019-08-14_12-00-49_LVL4.gct"}},"config":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate78_annotated_minimized_2019-08-14_12-00-49.cfg"}}}
18 Apr 2021 21:45:02,761 INFO : Sent POST request to https://api.clue.io/api/psp
18 Apr 2021 21:45:02,762 INFO : Checking status of job 607d0ace5e18ad0011655fb2
18 Apr 2021 21:45:02,900 INFO : Status: Waiting_To_Download
18 Apr 2021 21:45:22,903 INFO : Checking status of job 607d0ace5e18ad0011655fb2
18 Apr 2021 21:45:32,188 INFO : Status: created LVL2 GCT
18 Apr 2021 21:45:52,190 INFO : Checking status of job 607d0ace5e18ad0011655fb2
18 Apr 2021 21:45:52,475 INFO : Status: created LVL2 GCT
18 Apr 2021 21:46:12,479 INFO : Checking status of job 607d0ace5e18ad0011655fb2
18 Apr 2021 21:46:12,769 INFO : Status: created LVL2 GCT
18 Apr 2021 21:46:41,930 INFO : Checking status of job 607d0ace5e18ad0011655fb2
18 Apr 2021 21:46:42,321 INFO : Status: created LVL2 GCT
18 Apr 2021 21:47:02,323 INFO : Checking status of job 607d0ace5e18ad0011655fb2
18 Apr 2021 21:47:02,614 INFO : Status: created LVL2 GCT
18 Apr 2021 21:47:22,616 INFO : Checking status of job 607d0ace5e18ad0011655fb2
18 Apr 2021 21:47:22,982 INFO : Status: created LVL2 GCT
18 Apr 2021 21:47:42,983 INFO : Checking status of job 607d0ace5e18ad0011655fb2
18 Apr 2021 21:47:43,275 INFO : Status: created LVL2 GCT
18 Apr 2021 21:48:03,279 INFO : Checking status of job 607d0ace5e18ad0011655fb2
18 Apr 2021 21:48:04,573 INFO : Status: created LVL2 GCT
18 Apr 2021 21:48:24,576 INFO : Checking status of job 607d0ace5e18ad0011655fb2
18 Apr 2021 21:48:24,859 INFO : Status: created LVL2 GCT
18 Apr 2021 21:48:44,860 INFO : Checking status of job 607d0ace5e18ad0011655fb2
18 Apr 2021 21:48:45,223 INFO : Status: created LVL2 GCT
18 Apr 2021 21:49:14,405 INFO : Checking status of job 607d0ace5e18ad0011655fb2
18 Apr 2021 21:49:14,694 INFO : Status: created LVL 3 GCT
18 Apr 2021 21:49:34,697 INFO : Checking status of job 607d0ace5e18ad0011655fb2
18 Apr 2021 21:49:34,992 INFO : Status: POUR : succeeded in uploading all GCTs to Panorama
18 Apr 2021 21:49:34,993 INFO : PSP job completed with status: POUR : succeeded in uploading all GCTs to Panorama
18 Apr 2021 21:49:34,993 INFO : Finished running LINCS PSP pipeline.
18 Apr 2021 21:49:35,002 INFO : Successfully completed task 'org.labkey.lincs.psp.LincsPspTask'