• Sign In
  1. Pipeline Jobs

Re-running LINCS pipeline for: LINCS_GCP_Plate63_annotated_minimized_2019-09-12_11-57-23

GCP

Job Status

Created: 2021-04-18 20:39:01
Modified: 2021-04-18 21:15:09
Email: vsharma@uw.edu
Status: COMPLETE
Info:
Description: Re-running LINCS pipeline for: LINCS_GCP_Plate63_annotated_minimized_2019-09-12_11-57-23
File Path: /data/labkey/files/LINCS/GCP/@files/LincsPSP_rerun_LINCS_GCP_Plate63_annotated_minimized_2019-09-12_11-57-23_2021-04-18_20-39.log
Files: LincsPSP_rerun_LINCS_GCP_Plate63_annotated_minimized_2019-09-12_11-57-23_2021-04-18_20-39.log
Show Grid Browse Files

Log File


18 Apr 2021 20:39:01,077 INFO : Re-running LINCS pipeline for:  LINCS_GCP_Plate63_annotated_minimized_2019-09-12_11-57-23
18 Apr 2021 20:39:01,078 INFO : =======================================
18 Apr 2021 20:49:38,199 INFO : Starting to run task 'org.labkey.lincs.cromwell.CromwellGctTask' at location 'webserver-high-priority'
18 Apr 2021 20:49:38,200 INFO : Starting task to create L2 GCT for LINCS_GCP_Plate63_annotated_minimized_2019-09-12_11-57-23.sky.zip
18 Apr 2021 20:49:38,206 INFO : Submitting job to http://m002.grid.gs.washington.edu:8000/api/workflows/v1
18 Apr 2021 20:49:38,236 INFO : Checking status of job at http://m002.grid.gs.washington.edu:8000/api/workflows/v1/9d3cd5a0-50cf-4ced-b1b5-6bd926fbaded/status
18 Apr 2021 20:49:58,259 INFO : Cromwell job status: Running
18 Apr 2021 20:50:58,331 INFO : Cromwell job status: Succeeded
18 Apr 2021 20:50:58,332 INFO : Cromwell job completed successfully
18 Apr 2021 20:50:58,333 INFO : Successfully completed task 'org.labkey.lincs.cromwell.CromwellGctTask'
18 Apr 2021 21:09:28,424 INFO : Starting to run task 'org.labkey.lincs.psp.LincsPspTask' at location 'webserver-high-priority'
18 Apr 2021 21:09:28,425 INFO : Running LINCS PSP pipeline for LINCS_GCP_Plate63_annotated_minimized_2019-09-12_11-57-23
18 Apr 2021 21:09:28,426 INFO : Resubmitting job for runId: 74230, name: LINCS_GCP_Plate63_annotated_minimized_2019-09-12_11-57-23
18 Apr 2021 21:09:28,426 INFO : Old job details: 
18 Apr 2021 21:09:28,426 INFO : Id: 221
18 Apr 2021 21:09:28,426 INFO : Pipeline job Id: 74855
18 Apr 2021 21:09:28,426 INFO : Run Id: 74230
18 Apr 2021 21:09:28,426 INFO : PSP Job Id: 5d7ad348df6ca20013c3ede6
18 Apr 2021 21:09:28,426 INFO : PSP Job name: LINCS_GCP_Plate63_annotated_minimized_2019-09-12_11-57-23_2
18 Apr 2021 21:09:28,426 INFO : PSP Job status: POUR : succeeded in uploading all GCTs to Panorama
18 Apr 2021 21:09:28,426 INFO : JSON: {"level 4":{"s3":{"url":"s3://proteomics.clue.io/psp/level4/LINCS_GCP_Plate63_annotated_minimized_2019-09-12_11-57-23_2_LVL4.gct"},"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate63_annotated_minimized_2019-09-12_11-57-23_LVL4.gct"}},"assay":"GCP","created":"2019-09-12T23:22:48.369Z","name":"LINCS_GCP_Plate63_annotated_minimized_2019-09-12_11-57-23_2","id":"5d7ad348df6ca20013c3ede6","last_modified":"2019-09-12T23:25:54.274Z","config":{"s3":{"url":"s3://proteomics.clue.io/psp/config/LINCS_GCP_Plate63_annotated_minimized_2019-09-12_11-57-23_2.cfg"},"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate63_annotated_minimized_2019-09-12_11-57-23.cfg"}},"level 2":{"s3":{"url":"s3://proteomics.clue.io/psp/level2/LINCS_GCP_Plate63_annotated_minimized_2019-09-12_11-57-23_2_LVL2.gct"},"panorama":{"method":"GET","url":"https://panoramaweb.org/lincs/LINCS/GCP/runGCTReportApi.view?runId=74230&remote=true&reportName=GCT%20File%20GCP"}},"status":"POUR : succeeded in uploading all GCTs to Panorama","level 3":{"s3":{"url":"s3://proteomics.clue.io/psp/level3/LINCS_GCP_Plate63_annotated_minimized_2019-09-12_11-57-23_2_LVL3.gct"},"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate63_annotated_minimized_2019-09-12_11-57-23_LVL3.gct"}}}
18 Apr 2021 21:09:28,426 INFO : Resubmitting...
18 Apr 2021 21:09:28,428 INFO : Looking for existing job with name LINCS_GCP_Plate63_annotated_minimized_2019-09-12_11-57-23
18 Apr 2021 21:09:28,568 INFO : Job with name LINCS_GCP_Plate63_annotated_minimized_2019-09-12_11-57-23exists.
18 Apr 2021 21:09:28,568 INFO : Looking for existing job with name LINCS_GCP_Plate63_annotated_minimized_2019-09-12_11-57-23_2
18 Apr 2021 21:09:28,702 INFO : Job with name LINCS_GCP_Plate63_annotated_minimized_2019-09-12_11-57-23_2exists.
18 Apr 2021 21:09:28,702 INFO : Looking for existing job with name LINCS_GCP_Plate63_annotated_minimized_2019-09-12_11-57-23_3
18 Apr 2021 21:09:28,834 INFO : Job with name LINCS_GCP_Plate63_annotated_minimized_2019-09-12_11-57-23_3exists.
18 Apr 2021 21:09:28,836 INFO : Looking for existing job with name LINCS_GCP_Plate63_annotated_minimized_2019-09-12_11-57-23_4
18 Apr 2021 21:09:28,969 INFO : Job with name LINCS_GCP_Plate63_annotated_minimized_2019-09-12_11-57-23_4exists.
18 Apr 2021 21:09:28,970 INFO : Looking for existing job with name LINCS_GCP_Plate63_annotated_minimized_2019-09-12_11-57-23_5
18 Apr 2021 21:09:29,100 INFO : Job with name LINCS_GCP_Plate63_annotated_minimized_2019-09-12_11-57-23_5exists.
18 Apr 2021 21:09:29,100 INFO : Looking for existing job with name LINCS_GCP_Plate63_annotated_minimized_2019-09-12_11-57-23_6
18 Apr 2021 21:09:29,236 INFO : PSP job name: LINCS_GCP_Plate63_annotated_minimized_2019-09-12_11-57-23_6
18 Apr 2021 21:09:29,236 INFO : Sending JSON:
18 Apr 2021 21:09:29,237 INFO : {
  "level 4": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate63_annotated_minimized_2019-09-12_11-57-23_LVL4.gct"
  }},
  "assay": "GCP",
  "name": "LINCS_GCP_Plate63_annotated_minimized_2019-09-12_11-57-23_6",
  "config": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate63_annotated_minimized_2019-09-12_11-57-23.cfg"
  }},
  "level 2": {"panorama": {
    "method": "GET",
    "url": "https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate63_annotated_minimized_2019-09-12_11-57-23.gct"
  }},
  "level 3": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate63_annotated_minimized_2019-09-12_11-57-23_LVL3.gct"
  }}
}
18 Apr 2021 21:09:29,237 INFO : Sending POST request to https://api.clue.io/api/psp
18 Apr 2021 21:09:29,440 INFO : Response code - 200
18 Apr 2021 21:09:29,440 INFO : Response from server: {"name":"LINCS_GCP_Plate63_annotated_minimized_2019-09-12_11-57-23_6","assay":"GCP","status":"Waiting_To_Download","id":"607d02795e18ad0011655fae","created":"2021-04-19T04:09:29.315Z","last_modified":"2021-04-19T04:09:29.315Z","level 2":{"panorama":{"method":"GET","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate63_annotated_minimized_2019-09-12_11-57-23.gct"}},"level 3":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate63_annotated_minimized_2019-09-12_11-57-23_LVL3.gct"}},"level 4":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate63_annotated_minimized_2019-09-12_11-57-23_LVL4.gct"}},"config":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate63_annotated_minimized_2019-09-12_11-57-23.cfg"}}}
18 Apr 2021 21:09:29,440 INFO : Sent POST request to https://api.clue.io/api/psp
18 Apr 2021 21:09:29,442 INFO : Checking status of job 607d02795e18ad0011655fae
18 Apr 2021 21:09:29,575 INFO : Status: Waiting_To_Download
18 Apr 2021 21:09:49,576 INFO : Checking status of job 607d02795e18ad0011655fae
18 Apr 2021 21:09:57,973 INFO : Status: created LVL2 GCT
18 Apr 2021 21:10:17,975 INFO : Checking status of job 607d02795e18ad0011655fae
18 Apr 2021 21:10:18,268 INFO : Status: created LVL2 GCT
18 Apr 2021 21:10:38,270 INFO : Checking status of job 607d02795e18ad0011655fae
18 Apr 2021 21:10:38,643 INFO : Status: created LVL2 GCT
18 Apr 2021 21:10:58,645 INFO : Checking status of job 607d02795e18ad0011655fae
18 Apr 2021 21:11:08,021 INFO : Status: created LVL2 GCT
18 Apr 2021 21:11:28,023 INFO : Checking status of job 607d02795e18ad0011655fae
18 Apr 2021 21:11:28,311 INFO : Status: created LVL2 GCT
18 Apr 2021 21:11:48,316 INFO : Checking status of job 607d02795e18ad0011655fae
18 Apr 2021 21:11:48,605 INFO : Status: created LVL2 GCT
18 Apr 2021 21:12:08,607 INFO : Checking status of job 607d02795e18ad0011655fae
18 Apr 2021 21:12:18,130 INFO : Status: created LVL2 GCT
18 Apr 2021 21:12:38,134 INFO : Checking status of job 607d02795e18ad0011655fae
18 Apr 2021 21:12:38,423 INFO : Status: created LVL2 GCT
18 Apr 2021 21:12:58,427 INFO : Checking status of job 607d02795e18ad0011655fae
18 Apr 2021 21:12:58,722 INFO : Status: created LVL2 GCT
18 Apr 2021 21:13:18,724 INFO : Checking status of job 607d02795e18ad0011655fae
18 Apr 2021 21:13:28,246 INFO : Status: created LVL2 GCT
18 Apr 2021 21:13:48,249 INFO : Checking status of job 607d02795e18ad0011655fae
18 Apr 2021 21:13:48,615 INFO : Status: created LVL2 GCT
18 Apr 2021 21:14:08,619 INFO : Checking status of job 607d02795e18ad0011655fae
18 Apr 2021 21:14:08,908 INFO : Status: created LVL2 GCT
18 Apr 2021 21:14:28,916 INFO : Checking status of job 607d02795e18ad0011655fae
18 Apr 2021 21:14:29,334 INFO : Status: created LVL2 GCT
18 Apr 2021 21:14:49,337 INFO : Checking status of job 607d02795e18ad0011655fae
18 Apr 2021 21:14:49,618 INFO : Status: created LVL 3 GCT
18 Apr 2021 21:15:09,621 INFO : Checking status of job 607d02795e18ad0011655fae
18 Apr 2021 21:15:09,911 INFO : Status: POUR : succeeded in uploading all GCTs to Panorama
18 Apr 2021 21:15:09,911 INFO : PSP job completed with status: POUR : succeeded in uploading all GCTs to Panorama
18 Apr 2021 21:15:09,911 INFO : Finished running LINCS PSP pipeline.
18 Apr 2021 21:15:09,911 INFO : Successfully completed task 'org.labkey.lincs.psp.LincsPspTask'