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Re-running LINCS pipeline for: LINCS_GCP_Plate88_annotated_minimized_2019-10-16_11-37-48

GCP

Job Status

Created: 2021-04-18 20:38:41
Modified: 2021-04-18 21:04:01
Email: vsharma@uw.edu
Status: COMPLETE
Info:
Description: Re-running LINCS pipeline for: LINCS_GCP_Plate88_annotated_minimized_2019-10-16_11-37-48
File Path: /data/labkey/files/LINCS/GCP/@files/LincsPSP_rerun_LINCS_GCP_Plate88_annotated_minimized_2019-10-16_11-37-48_2021-04-18_20-38-41.log
Files: LincsPSP_rerun_LINCS_GCP_Plate88_annotated_minimized_2019-10-16_11-37-48_2021-04-18_20-38-41.log
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Log File


18 Apr 2021 20:38:41,921 INFO : Re-running LINCS pipeline for:  LINCS_GCP_Plate88_annotated_minimized_2019-10-16_11-37-48
18 Apr 2021 20:38:41,922 INFO : =======================================
18 Apr 2021 20:45:37,741 INFO : Starting to run task 'org.labkey.lincs.cromwell.CromwellGctTask' at location 'webserver-high-priority'
18 Apr 2021 20:45:37,743 INFO : Starting task to create L2 GCT for LINCS_GCP_Plate88_annotated_minimized_2019-10-16_11-37-48.sky.zip
18 Apr 2021 20:45:37,751 INFO : Submitting job to http://m002.grid.gs.washington.edu:8000/api/workflows/v1
18 Apr 2021 20:45:37,779 INFO : Checking status of job at http://m002.grid.gs.washington.edu:8000/api/workflows/v1/836f26e1-e58f-4be8-aa21-ef0eb397cc4f/status
18 Apr 2021 20:45:57,800 INFO : Cromwell job status: Running
18 Apr 2021 20:46:57,867 INFO : Cromwell job status: Succeeded
18 Apr 2021 20:46:57,868 INFO : Cromwell job completed successfully
18 Apr 2021 20:46:57,869 INFO : Successfully completed task 'org.labkey.lincs.cromwell.CromwellGctTask'
18 Apr 2021 21:03:20,405 INFO : Starting to run task 'org.labkey.lincs.psp.LincsPspTask' at location 'webserver-high-priority'
18 Apr 2021 21:03:20,407 INFO : Running LINCS PSP pipeline for LINCS_GCP_Plate88_annotated_minimized_2019-10-16_11-37-48
18 Apr 2021 21:03:20,407 INFO : Resubmitting job for runId: 76757, name: LINCS_GCP_Plate88_annotated_minimized_2019-10-16_11-37-48
18 Apr 2021 21:03:20,407 INFO : Old job details: 
18 Apr 2021 21:03:20,407 INFO : Id: 237
18 Apr 2021 21:03:20,408 INFO : Pipeline job Id: 77362
18 Apr 2021 21:03:20,408 INFO : Run Id: 76757
18 Apr 2021 21:03:20,408 INFO : PSP Job Id: 5da73bb9d7148a0019927aff
18 Apr 2021 21:03:20,408 INFO : PSP Job name: LINCS_GCP_Plate88_annotated_minimized_2019-10-16_11-37-48
18 Apr 2021 21:03:20,408 INFO : PSP Job status: POUR : succeeded in uploading all GCTs to Panorama
18 Apr 2021 21:03:20,408 INFO : JSON: {"level 4":{"s3":{"url":"s3://proteomics.clue.io/psp/level4/LINCS_GCP_Plate88_annotated_minimized_2019-10-16_11-37-48_LVL4.gct"},"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate88_annotated_minimized_2019-10-16_11-37-48_LVL4.gct"}},"assay":"GCP","created":"2019-10-16T15:48:09.959Z","name":"LINCS_GCP_Plate88_annotated_minimized_2019-10-16_11-37-48","id":"5da73bb9d7148a0019927aff","last_modified":"2019-10-16T16:14:55.556Z","config":{"s3":{"url":"s3://proteomics.clue.io/psp/config/LINCS_GCP_Plate88_annotated_minimized_2019-10-16_11-37-48.cfg"},"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate88_annotated_minimized_2019-10-16_11-37-48.cfg"}},"level 2":{"s3":{"url":"s3://proteomics.clue.io/psp/level2/LINCS_GCP_Plate88_annotated_minimized_2019-10-16_11-37-48_LVL2.gct"},"panorama":{"method":"GET","url":"https://panoramaweb.org/lincs/LINCS/GCP/runGCTReportApi.view?runId=76757&remote=true&reportName=GCT%20File%20GCP"}},"status":"POUR : succeeded in uploading all GCTs to Panorama","level 3":{"s3":{"url":"s3://proteomics.clue.io/psp/level3/LINCS_GCP_Plate88_annotated_minimized_2019-10-16_11-37-48_LVL3.gct"},"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate88_annotated_minimized_2019-10-16_11-37-48_LVL3.gct"}}}
18 Apr 2021 21:03:20,408 INFO : Resubmitting...
18 Apr 2021 21:03:20,410 INFO : Looking for existing job with name LINCS_GCP_Plate88_annotated_minimized_2019-10-16_11-37-48
18 Apr 2021 21:03:20,553 INFO : Job with name LINCS_GCP_Plate88_annotated_minimized_2019-10-16_11-37-48exists.
18 Apr 2021 21:03:20,553 INFO : Looking for existing job with name LINCS_GCP_Plate88_annotated_minimized_2019-10-16_11-37-48_2
18 Apr 2021 21:03:20,689 INFO : PSP job name: LINCS_GCP_Plate88_annotated_minimized_2019-10-16_11-37-48_2
18 Apr 2021 21:03:20,690 INFO : Sending JSON:
18 Apr 2021 21:03:20,690 INFO : {
  "level 4": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate88_annotated_minimized_2019-10-16_11-37-48_LVL4.gct"
  }},
  "assay": "GCP",
  "name": "LINCS_GCP_Plate88_annotated_minimized_2019-10-16_11-37-48_2",
  "config": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate88_annotated_minimized_2019-10-16_11-37-48.cfg"
  }},
  "level 2": {"panorama": {
    "method": "GET",
    "url": "https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate88_annotated_minimized_2019-10-16_11-37-48.gct"
  }},
  "level 3": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate88_annotated_minimized_2019-10-16_11-37-48_LVL3.gct"
  }}
}
18 Apr 2021 21:03:20,691 INFO : Sending POST request to https://api.clue.io/api/psp
18 Apr 2021 21:03:20,903 INFO : Response code - 200
18 Apr 2021 21:03:20,903 INFO : Response from server: {"name":"LINCS_GCP_Plate88_annotated_minimized_2019-10-16_11-37-48_2","assay":"GCP","status":"Waiting_To_Download","id":"607d01085e18ad0011655fab","created":"2021-04-19T04:03:20.772Z","last_modified":"2021-04-19T04:03:20.772Z","level 2":{"panorama":{"method":"GET","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate88_annotated_minimized_2019-10-16_11-37-48.gct"}},"level 3":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate88_annotated_minimized_2019-10-16_11-37-48_LVL3.gct"}},"level 4":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate88_annotated_minimized_2019-10-16_11-37-48_LVL4.gct"}},"config":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate88_annotated_minimized_2019-10-16_11-37-48.cfg"}}}
18 Apr 2021 21:03:20,903 INFO : Sent POST request to https://api.clue.io/api/psp
18 Apr 2021 21:03:20,905 INFO : Checking status of job 607d01085e18ad0011655fab
18 Apr 2021 21:03:21,042 INFO : Status: Waiting_To_Download
18 Apr 2021 21:03:41,046 INFO : Checking status of job 607d01085e18ad0011655fab
18 Apr 2021 21:03:41,447 INFO : Status: created LVL 3 GCT
18 Apr 2021 21:04:01,449 INFO : Checking status of job 607d01085e18ad0011655fab
18 Apr 2021 21:04:01,741 INFO : Status: POUR : succeeded in uploading all GCTs to Panorama
18 Apr 2021 21:04:01,741 INFO : PSP job completed with status: POUR : succeeded in uploading all GCTs to Panorama
18 Apr 2021 21:04:01,741 INFO : Finished running LINCS PSP pipeline.
18 Apr 2021 21:04:01,741 INFO : Successfully completed task 'org.labkey.lincs.psp.LincsPspTask'