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Re-running LINCS pipeline for: LINCS_GCP_Plate87_annotated_minimized_2019-10-16_17-59-07

GCP

Job Status

Created: 2021-04-18 20:37:31
Modified: 2021-04-18 21:02:30
Email: vsharma@uw.edu
Status: COMPLETE
Info:
Description: Re-running LINCS pipeline for: LINCS_GCP_Plate87_annotated_minimized_2019-10-16_17-59-07
File Path: /data/labkey/files/LINCS/GCP/@files/LincsPSP_rerun_LINCS_GCP_Plate87_annotated_minimized_2019-10-16_17-59-07_2021-04-18_20-37-31.log
Files: LincsPSP_rerun_LINCS_GCP_Plate87_annotated_minimized_2019-10-16_17-59-07_2021-04-18_20-37-31.log
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Log File


18 Apr 2021 20:37:31,877 INFO : Re-running LINCS pipeline for:  LINCS_GCP_Plate87_annotated_minimized_2019-10-16_17-59-07
18 Apr 2021 20:37:31,878 INFO : =======================================
18 Apr 2021 20:39:12,199 INFO : Starting to run task 'org.labkey.lincs.cromwell.CromwellGctTask' at location 'webserver-high-priority'
18 Apr 2021 20:39:12,199 INFO : Starting task to create L2 GCT for LINCS_GCP_Plate87_annotated_minimized_2019-10-16_17-59-07.sky.zip
18 Apr 2021 20:39:12,206 INFO : Submitting job to http://m002.grid.gs.washington.edu:8000/api/workflows/v1
18 Apr 2021 20:39:12,233 INFO : Checking status of job at http://m002.grid.gs.washington.edu:8000/api/workflows/v1/4e720a54-1433-458f-8639-797a200d37db/status
18 Apr 2021 20:39:32,264 INFO : Cromwell job status: Running
18 Apr 2021 20:40:12,301 INFO : Cromwell job status: Succeeded
18 Apr 2021 20:40:12,301 INFO : Cromwell job completed successfully
18 Apr 2021 20:40:12,302 INFO : Successfully completed task 'org.labkey.lincs.cromwell.CromwellGctTask'
18 Apr 2021 20:58:03,494 INFO : Starting to run task 'org.labkey.lincs.psp.LincsPspTask' at location 'webserver-high-priority'
18 Apr 2021 20:58:03,496 INFO : Running LINCS PSP pipeline for LINCS_GCP_Plate87_annotated_minimized_2019-10-16_17-59-07
18 Apr 2021 20:58:03,496 INFO : Resubmitting job for runId: 76798, name: LINCS_GCP_Plate87_annotated_minimized_2019-10-16_17-59-07
18 Apr 2021 20:58:03,496 INFO : Old job details: 
18 Apr 2021 20:58:03,496 INFO : Id: 239
18 Apr 2021 20:58:03,497 INFO : Pipeline job Id: 77405
18 Apr 2021 20:58:03,497 INFO : Run Id: 76798
18 Apr 2021 20:58:03,497 INFO : PSP Job Id: 5da793f9d7148a0019927b9c
18 Apr 2021 20:58:03,497 INFO : PSP Job name: LINCS_GCP_Plate87_annotated_minimized_2019-10-16_17-59-07
18 Apr 2021 20:58:03,497 INFO : PSP Job status: POUR : succeeded in uploading all GCTs to Panorama
18 Apr 2021 20:58:03,497 INFO : JSON: {"level 4":{"s3":{"url":"s3://proteomics.clue.io/psp/level4/LINCS_GCP_Plate87_annotated_minimized_2019-10-16_17-59-07_LVL4.gct"},"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate87_annotated_minimized_2019-10-16_17-59-07_LVL4.gct"}},"assay":"GCP","created":"2019-10-16T22:04:41.455Z","name":"LINCS_GCP_Plate87_annotated_minimized_2019-10-16_17-59-07","id":"5da793f9d7148a0019927b9c","last_modified":"2019-10-16T22:10:09.488Z","config":{"s3":{"url":"s3://proteomics.clue.io/psp/config/LINCS_GCP_Plate87_annotated_minimized_2019-10-16_17-59-07.cfg"},"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate87_annotated_minimized_2019-10-16_17-59-07.cfg"}},"level 2":{"s3":{"url":"s3://proteomics.clue.io/psp/level2/LINCS_GCP_Plate87_annotated_minimized_2019-10-16_17-59-07_LVL2.gct"},"panorama":{"method":"GET","url":"https://panoramaweb.org/lincs/LINCS/GCP/runGCTReportApi.view?runId=76798&remote=true&reportName=GCT%20File%20GCP"}},"status":"POUR : succeeded in uploading all GCTs to Panorama","level 3":{"s3":{"url":"s3://proteomics.clue.io/psp/level3/LINCS_GCP_Plate87_annotated_minimized_2019-10-16_17-59-07_LVL3.gct"},"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate87_annotated_minimized_2019-10-16_17-59-07_LVL3.gct"}}}
18 Apr 2021 20:58:03,497 INFO : Resubmitting...
18 Apr 2021 20:58:03,499 INFO : Looking for existing job with name LINCS_GCP_Plate87_annotated_minimized_2019-10-16_17-59-07
18 Apr 2021 20:58:03,877 INFO : Job with name LINCS_GCP_Plate87_annotated_minimized_2019-10-16_17-59-07exists.
18 Apr 2021 20:58:03,877 INFO : Looking for existing job with name LINCS_GCP_Plate87_annotated_minimized_2019-10-16_17-59-07_2
18 Apr 2021 20:58:04,012 INFO : PSP job name: LINCS_GCP_Plate87_annotated_minimized_2019-10-16_17-59-07_2
18 Apr 2021 20:58:04,012 INFO : Sending JSON:
18 Apr 2021 20:58:04,013 INFO : {
  "level 4": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate87_annotated_minimized_2019-10-16_17-59-07_LVL4.gct"
  }},
  "assay": "GCP",
  "name": "LINCS_GCP_Plate87_annotated_minimized_2019-10-16_17-59-07_2",
  "config": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate87_annotated_minimized_2019-10-16_17-59-07.cfg"
  }},
  "level 2": {"panorama": {
    "method": "GET",
    "url": "https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate87_annotated_minimized_2019-10-16_17-59-07.gct"
  }},
  "level 3": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate87_annotated_minimized_2019-10-16_17-59-07_LVL3.gct"
  }}
}
18 Apr 2021 20:58:04,015 INFO : Sending POST request to https://api.clue.io/api/psp
18 Apr 2021 20:58:04,207 INFO : Response code - 200
18 Apr 2021 20:58:04,207 INFO : Response from server: {"name":"LINCS_GCP_Plate87_annotated_minimized_2019-10-16_17-59-07_2","assay":"GCP","status":"Waiting_To_Download","id":"607cffcc5e18ad0011655faa","created":"2021-04-19T03:58:04.093Z","last_modified":"2021-04-19T03:58:04.093Z","level 2":{"panorama":{"method":"GET","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate87_annotated_minimized_2019-10-16_17-59-07.gct"}},"level 3":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate87_annotated_minimized_2019-10-16_17-59-07_LVL3.gct"}},"level 4":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate87_annotated_minimized_2019-10-16_17-59-07_LVL4.gct"}},"config":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate87_annotated_minimized_2019-10-16_17-59-07.cfg"}}}
18 Apr 2021 20:58:04,209 INFO : Sent POST request to https://api.clue.io/api/psp
18 Apr 2021 20:58:04,210 INFO : Checking status of job 607cffcc5e18ad0011655faa
18 Apr 2021 20:58:04,348 INFO : Status: Waiting_To_Download
18 Apr 2021 20:58:24,351 INFO : Checking status of job 607cffcc5e18ad0011655faa
18 Apr 2021 20:58:24,638 INFO : Status: created LVL2 GCT
18 Apr 2021 20:58:44,640 INFO : Checking status of job 607cffcc5e18ad0011655faa
18 Apr 2021 20:58:45,016 INFO : Status: created LVL2 GCT
18 Apr 2021 20:59:05,020 INFO : Checking status of job 607cffcc5e18ad0011655faa
18 Apr 2021 20:59:05,311 INFO : Status: created LVL2 GCT
18 Apr 2021 20:59:25,317 INFO : Checking status of job 607cffcc5e18ad0011655faa
18 Apr 2021 20:59:25,767 INFO : Status: created LVL2 GCT
18 Apr 2021 20:59:45,770 INFO : Checking status of job 607cffcc5e18ad0011655faa
18 Apr 2021 20:59:46,062 INFO : Status: created LVL2 GCT
18 Apr 2021 21:00:06,065 INFO : Checking status of job 607cffcc5e18ad0011655faa
18 Apr 2021 21:00:06,359 INFO : Status: created LVL2 GCT
18 Apr 2021 21:00:26,361 INFO : Checking status of job 607cffcc5e18ad0011655faa
18 Apr 2021 21:00:26,646 INFO : Status: created LVL2 GCT
18 Apr 2021 21:00:46,648 INFO : Checking status of job 607cffcc5e18ad0011655faa
18 Apr 2021 21:00:47,026 INFO : Status: created LVL2 GCT
18 Apr 2021 21:01:07,028 INFO : Checking status of job 607cffcc5e18ad0011655faa
18 Apr 2021 21:01:07,320 INFO : Status: created LVL2 GCT
18 Apr 2021 21:01:27,324 INFO : Checking status of job 607cffcc5e18ad0011655faa
18 Apr 2021 21:01:27,623 INFO : Status: created LVL2 GCT
18 Apr 2021 21:01:47,627 INFO : Checking status of job 607cffcc5e18ad0011655faa
18 Apr 2021 21:01:47,913 INFO : Status: created LVL2 GCT
18 Apr 2021 21:02:07,915 INFO : Checking status of job 607cffcc5e18ad0011655faa
18 Apr 2021 21:02:10,319 INFO : Status: created LVL 4 GCT
18 Apr 2021 21:02:30,322 INFO : Checking status of job 607cffcc5e18ad0011655faa
18 Apr 2021 21:02:30,616 INFO : Status: POUR : succeeded in uploading all GCTs to Panorama
18 Apr 2021 21:02:30,616 INFO : PSP job completed with status: POUR : succeeded in uploading all GCTs to Panorama
18 Apr 2021 21:02:30,617 INFO : Finished running LINCS PSP pipeline.
18 Apr 2021 21:02:30,617 INFO : Successfully completed task 'org.labkey.lincs.psp.LincsPspTask'