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Re-running LINCS pipeline for: LINCS_GCP_Plate86_annotated_minimized_2019-10-30_11-14-22

GCP

Job Status

Created: 2021-04-18 15:15:57
Modified: 2021-04-18 15:47:38
Email: vsharma@uw.edu
Status: COMPLETE
Info:
Description: Re-running LINCS pipeline for: LINCS_GCP_Plate86_annotated_minimized_2019-10-30_11-14-22
File Path: /data/labkey/files/LINCS/GCP/@files/LincsPSP_rerun_LINCS_GCP_Plate86_annotated_minimized_2019-10-30_11-14-22_2021-04-18_15-15-57.log
Files: LincsPSP_rerun_LINCS_GCP_Plate86_annotated_minimized_2019-10-30_11-14-22_2021-04-18_15-15-57.log
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Log File


18 Apr 2021 15:15:57,791 INFO : Re-running LINCS pipeline for:  LINCS_GCP_Plate86_annotated_minimized_2019-10-30_11-14-22
18 Apr 2021 15:15:57,792 INFO : =======================================
18 Apr 2021 15:25:28,286 INFO : Starting to run task 'org.labkey.lincs.cromwell.CromwellGctTask' at location 'webserver-high-priority'
18 Apr 2021 15:25:28,286 INFO : Starting task to create L2 GCT for LINCS_GCP_Plate86_annotated_minimized_2019-10-30_11-14-22.sky.zip
18 Apr 2021 15:25:28,293 INFO : Submitting job to http://m002.grid.gs.washington.edu:8000/api/workflows/v1
18 Apr 2021 15:25:28,321 INFO : Checking status of job at http://m002.grid.gs.washington.edu:8000/api/workflows/v1/876f4125-cf49-435f-bf0a-0be82a90f977/status
18 Apr 2021 15:25:48,347 INFO : Cromwell job status: Running
18 Apr 2021 15:26:48,417 INFO : Cromwell job status: Succeeded
18 Apr 2021 15:26:48,417 INFO : Cromwell job completed successfully
18 Apr 2021 15:26:48,418 INFO : Successfully completed task 'org.labkey.lincs.cromwell.CromwellGctTask'
18 Apr 2021 15:46:57,039 INFO : Starting to run task 'org.labkey.lincs.psp.LincsPspTask' at location 'webserver-high-priority'
18 Apr 2021 15:46:57,040 INFO : Running LINCS PSP pipeline for LINCS_GCP_Plate86_annotated_minimized_2019-10-30_11-14-22
18 Apr 2021 15:46:57,040 INFO : Resubmitting job for runId: 77577, name: LINCS_GCP_Plate86_annotated_minimized_2019-10-30_11-14-22
18 Apr 2021 15:46:57,040 INFO : Old job details: 
18 Apr 2021 15:46:57,040 INFO : Id: 260
18 Apr 2021 15:46:57,040 INFO : Pipeline job Id: 78219
18 Apr 2021 15:46:57,040 INFO : Run Id: 77577
18 Apr 2021 15:46:57,040 INFO : PSP Job Id: 5db9b666d7148a0019928aef
18 Apr 2021 15:46:57,040 INFO : PSP Job name: LINCS_GCP_Plate86_annotated_minimized_2019-10-30_11-14-22_2
18 Apr 2021 15:46:57,040 INFO : PSP Job status: POUR : succeeded in uploading all GCTs to Panorama
18 Apr 2021 15:46:57,040 INFO : JSON: {"level 4":{"s3":{"url":"s3://proteomics.clue.io/psp/level4/LINCS_GCP_Plate86_annotated_minimized_2019-10-30_11-14-22_2_LVL4.gct"},"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate86_annotated_minimized_2019-10-30_11-14-22_LVL4.gct"}},"assay":"GCP","created":"2019-10-30T16:12:22.122Z","name":"LINCS_GCP_Plate86_annotated_minimized_2019-10-30_11-14-22_2","id":"5db9b666d7148a0019928aef","last_modified":"2019-10-30T16:16:16.170Z","config":{"s3":{"url":"s3://proteomics.clue.io/psp/config/LINCS_GCP_Plate86_annotated_minimized_2019-10-30_11-14-22_2.cfg"},"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate86_annotated_minimized_2019-10-30_11-14-22.cfg"}},"level 2":{"s3":{"url":"s3://proteomics.clue.io/psp/level2/LINCS_GCP_Plate86_annotated_minimized_2019-10-30_11-14-22_2_LVL2.gct"},"panorama":{"method":"GET","url":"https://panoramaweb.org/lincs/LINCS/GCP/runGCTReportApi.view?runId=77577&remote=true&reportName=GCT%20File%20GCP"}},"status":"POUR : succeeded in uploading all GCTs to Panorama","level 3":{"s3":{"url":"s3://proteomics.clue.io/psp/level3/LINCS_GCP_Plate86_annotated_minimized_2019-10-30_11-14-22_2_LVL3.gct"},"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate86_annotated_minimized_2019-10-30_11-14-22_LVL3.gct"}}}
18 Apr 2021 15:46:57,040 INFO : Resubmitting...
18 Apr 2021 15:46:57,041 INFO : Looking for existing job with name LINCS_GCP_Plate86_annotated_minimized_2019-10-30_11-14-22
18 Apr 2021 15:46:57,177 INFO : Job with name LINCS_GCP_Plate86_annotated_minimized_2019-10-30_11-14-22exists.
18 Apr 2021 15:46:57,177 INFO : Looking for existing job with name LINCS_GCP_Plate86_annotated_minimized_2019-10-30_11-14-22_2
18 Apr 2021 15:46:57,313 INFO : Job with name LINCS_GCP_Plate86_annotated_minimized_2019-10-30_11-14-22_2exists.
18 Apr 2021 15:46:57,313 INFO : Looking for existing job with name LINCS_GCP_Plate86_annotated_minimized_2019-10-30_11-14-22_3
18 Apr 2021 15:46:57,447 INFO : PSP job name: LINCS_GCP_Plate86_annotated_minimized_2019-10-30_11-14-22_3
18 Apr 2021 15:46:57,448 INFO : Sending JSON:
18 Apr 2021 15:46:57,449 INFO : {
  "level 4": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate86_annotated_minimized_2019-10-30_11-14-22_LVL4.gct"
  }},
  "assay": "GCP",
  "name": "LINCS_GCP_Plate86_annotated_minimized_2019-10-30_11-14-22_3",
  "config": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate86_annotated_minimized_2019-10-30_11-14-22.cfg"
  }},
  "level 2": {"panorama": {
    "method": "GET",
    "url": "https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate86_annotated_minimized_2019-10-30_11-14-22.gct"
  }},
  "level 3": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate86_annotated_minimized_2019-10-30_11-14-22_LVL3.gct"
  }}
}
18 Apr 2021 15:46:57,449 INFO : Sending POST request to https://api.clue.io/api/psp
18 Apr 2021 15:46:57,644 INFO : Response code - 200
18 Apr 2021 15:46:57,645 INFO : Response from server: {"name":"LINCS_GCP_Plate86_annotated_minimized_2019-10-30_11-14-22_3","assay":"GCP","status":"Waiting_To_Download","id":"607cb6e15e18ad0011655f37","created":"2021-04-18T22:46:57.525Z","last_modified":"2021-04-18T22:46:57.525Z","level 2":{"panorama":{"method":"GET","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate86_annotated_minimized_2019-10-30_11-14-22.gct"}},"level 3":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate86_annotated_minimized_2019-10-30_11-14-22_LVL3.gct"}},"level 4":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate86_annotated_minimized_2019-10-30_11-14-22_LVL4.gct"}},"config":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate86_annotated_minimized_2019-10-30_11-14-22.cfg"}}}
18 Apr 2021 15:46:57,645 INFO : Sent POST request to https://api.clue.io/api/psp
18 Apr 2021 15:46:57,646 INFO : Checking status of job 607cb6e15e18ad0011655f37
18 Apr 2021 15:46:57,778 INFO : Status: Waiting_To_Download
18 Apr 2021 15:47:17,782 INFO : Checking status of job 607cb6e15e18ad0011655f37
18 Apr 2021 15:47:18,072 INFO : Status: created LVL 3 GCT
18 Apr 2021 15:47:38,075 INFO : Checking status of job 607cb6e15e18ad0011655f37
18 Apr 2021 15:47:38,360 INFO : Status: POUR : succeeded in uploading all GCTs to Panorama
18 Apr 2021 15:47:38,360 INFO : PSP job completed with status: POUR : succeeded in uploading all GCTs to Panorama
18 Apr 2021 15:47:38,360 INFO : Finished running LINCS PSP pipeline.
18 Apr 2021 15:47:38,360 INFO : Successfully completed task 'org.labkey.lincs.psp.LincsPspTask'