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Running LINCS pipeline for: LINCS_GCP_Plate97_annotated_minimized_2021-02-02_14-10-30

GCP

Job Status

Created: 2021-02-02 11:18:18
Modified: 2021-02-02 11:26:41
Email: karen@broadinstitute.org
Status: COMPLETE
Info:
Description: Running LINCS pipeline for: LINCS_GCP_Plate97_annotated_minimized_2021-02-02_14-10-30
File Path: /data/labkey/files/LINCS/GCP/@files/LincsPSP_LINCS_GCP_Plate97_annotated_minimized_2021-02-02_14-10-30_2021-02-02_11-18-17.log
Files: LincsPSP_LINCS_GCP_Plate97_annotated_minimized_2021-02-02_14-10-30_2021-02-02_11-18-17.log
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Log File


02 Feb 2021 11:18:18,475 INFO : Running LINCS pipeline for:  LINCS_GCP_Plate97_annotated_minimized_2021-02-02_14-10-30
02 Feb 2021 11:18:18,502 INFO : =======================================
02 Feb 2021 11:18:33,946 INFO : Starting to run task 'org.labkey.lincs.cromwell.CromwellGctTask' at location 'webserver-high-priority'
02 Feb 2021 11:18:33,948 INFO : Starting task to create L2 GCT for LINCS_GCP_Plate97_annotated_minimized_2021-02-02_14-10-30.sky.zip
02 Feb 2021 11:18:33,996 INFO : Submitting job to http://m002.grid.gs.washington.edu:8000/api/workflows/v1
02 Feb 2021 11:18:34,055 INFO : Checking status of job at http://m002.grid.gs.washington.edu:8000/api/workflows/v1/08e02ad9-081b-4f04-b6b6-22190e21b022/status
02 Feb 2021 11:18:54,068 INFO : Cromwell job status: Running
02 Feb 2021 11:20:14,117 INFO : Cromwell job status: Succeeded
02 Feb 2021 11:20:14,119 INFO : Cromwell job completed successfully
02 Feb 2021 11:20:14,121 INFO : Successfully completed task 'org.labkey.lincs.cromwell.CromwellGctTask'
02 Feb 2021 11:20:14,317 INFO : Starting to run task 'org.labkey.lincs.psp.LincsPspTask' at location 'webserver-high-priority'
02 Feb 2021 11:20:14,319 INFO : Running LINCS PSP pipeline for LINCS_GCP_Plate97_annotated_minimized_2021-02-02_14-10-30
02 Feb 2021 11:20:14,320 INFO : Submitting job for runId: 102639, name: LINCS_GCP_Plate97_annotated_minimized_2021-02-02_14-10-30
02 Feb 2021 11:20:14,323 INFO : Looking for existing job with name LINCS_GCP_Plate97_annotated_minimized_2021-02-02_14-10-30
02 Feb 2021 11:20:14,687 INFO : PSP job name: LINCS_GCP_Plate97_annotated_minimized_2021-02-02_14-10-30
02 Feb 2021 11:20:14,689 INFO : Sending JSON:
02 Feb 2021 11:20:14,690 INFO : {
  "level 4": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate97_annotated_minimized_2021-02-02_14-10-30_LVL4.gct"
  }},
  "assay": "GCP",
  "name": "LINCS_GCP_Plate97_annotated_minimized_2021-02-02_14-10-30",
  "config": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate97_annotated_minimized_2021-02-02_14-10-30.cfg"
  }},
  "level 2": {"panorama": {
    "method": "GET",
    "url": "https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate97_annotated_minimized_2021-02-02_14-10-30.gct"
  }},
  "level 3": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate97_annotated_minimized_2021-02-02_14-10-30_LVL3.gct"
  }}
}
02 Feb 2021 11:20:14,691 INFO : Sending POST request to https://api.clue.io/api/psp
02 Feb 2021 11:20:14,898 INFO : Response code - 200
02 Feb 2021 11:20:14,900 INFO : Response from server: {"name":"LINCS_GCP_Plate97_annotated_minimized_2021-02-02_14-10-30","assay":"GCP","status":"Waiting_To_Download","id":"6019a5ee1dd2560011c08c0f","created":"2021-02-02T19:20:14.773Z","last_modified":"2021-02-02T19:20:14.773Z","level 2":{"panorama":{"method":"GET","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate97_annotated_minimized_2021-02-02_14-10-30.gct"}},"level 3":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate97_annotated_minimized_2021-02-02_14-10-30_LVL3.gct"}},"level 4":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate97_annotated_minimized_2021-02-02_14-10-30_LVL4.gct"}},"config":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS/GCP/%40files/GCT/LINCS_GCP_Plate97_annotated_minimized_2021-02-02_14-10-30.cfg"}}}
02 Feb 2021 11:20:14,901 INFO : Sent POST request to https://api.clue.io/api/psp
02 Feb 2021 11:20:14,904 INFO : Checking status of job 6019a5ee1dd2560011c08c0f
02 Feb 2021 11:20:15,038 INFO : Status: Waiting_To_Download
02 Feb 2021 11:20:35,041 INFO : Checking status of job 6019a5ee1dd2560011c08c0f
02 Feb 2021 11:20:35,338 INFO : Status: created LVL2 GCT
02 Feb 2021 11:20:55,341 INFO : Checking status of job 6019a5ee1dd2560011c08c0f
02 Feb 2021 11:20:55,684 INFO : Status: created LVL2 GCT
02 Feb 2021 11:21:15,687 INFO : Checking status of job 6019a5ee1dd2560011c08c0f
02 Feb 2021 11:21:15,983 INFO : Status: created LVL2 GCT
02 Feb 2021 11:21:35,988 INFO : Checking status of job 6019a5ee1dd2560011c08c0f
02 Feb 2021 11:21:36,392 INFO : Status: created LVL2 GCT
02 Feb 2021 11:21:56,397 INFO : Checking status of job 6019a5ee1dd2560011c08c0f
02 Feb 2021 11:21:56,693 INFO : Status: created LVL2 GCT
02 Feb 2021 11:22:16,697 INFO : Checking status of job 6019a5ee1dd2560011c08c0f
02 Feb 2021 11:22:17,000 INFO : Status: created LVL2 GCT
02 Feb 2021 11:22:37,004 INFO : Checking status of job 6019a5ee1dd2560011c08c0f
02 Feb 2021 11:22:37,317 INFO : Status: created LVL2 GCT
02 Feb 2021 11:22:57,321 INFO : Checking status of job 6019a5ee1dd2560011c08c0f
02 Feb 2021 11:22:57,705 INFO : Status: created LVL2 GCT
02 Feb 2021 11:23:17,708 INFO : Checking status of job 6019a5ee1dd2560011c08c0f
02 Feb 2021 11:23:17,994 INFO : Status: created LVL2 GCT
02 Feb 2021 11:23:37,998 INFO : Checking status of job 6019a5ee1dd2560011c08c0f
02 Feb 2021 11:23:38,297 INFO : Status: created LVL2 GCT
02 Feb 2021 11:23:58,301 INFO : Checking status of job 6019a5ee1dd2560011c08c0f
02 Feb 2021 11:23:58,593 INFO : Status: created LVL2 GCT
02 Feb 2021 11:24:18,607 INFO : Checking status of job 6019a5ee1dd2560011c08c0f
02 Feb 2021 11:24:18,900 INFO : Status: created LVL2 GCT
02 Feb 2021 11:24:38,904 INFO : Checking status of job 6019a5ee1dd2560011c08c0f
02 Feb 2021 11:24:39,191 INFO : Status: created LVL2 GCT
02 Feb 2021 11:24:59,195 INFO : Checking status of job 6019a5ee1dd2560011c08c0f
02 Feb 2021 11:24:59,568 INFO : Status: created LVL2 GCT
02 Feb 2021 11:25:19,572 INFO : Checking status of job 6019a5ee1dd2560011c08c0f
02 Feb 2021 11:25:19,866 INFO : Status: created LVL2 GCT
02 Feb 2021 11:25:39,870 INFO : Checking status of job 6019a5ee1dd2560011c08c0f
02 Feb 2021 11:25:40,166 INFO : Status: created LVL2 GCT
02 Feb 2021 11:26:00,170 INFO : Checking status of job 6019a5ee1dd2560011c08c0f
02 Feb 2021 11:26:00,466 INFO : Status: created LVL2 GCT
02 Feb 2021 11:26:20,470 INFO : Checking status of job 6019a5ee1dd2560011c08c0f
02 Feb 2021 11:26:20,855 INFO : Status: created LVL 3 GCT
02 Feb 2021 11:26:40,859 INFO : Checking status of job 6019a5ee1dd2560011c08c0f
02 Feb 2021 11:26:41,147 INFO : Status: POUR : succeeded in uploading all GCTs to Panorama
02 Feb 2021 11:26:41,148 INFO : PSP job completed with status: POUR : succeeded in uploading all GCTs to Panorama
02 Feb 2021 11:26:41,149 INFO : Finished running LINCS PSP pipeline.
02 Feb 2021 11:26:41,150 INFO : Successfully completed task 'org.labkey.lincs.psp.LincsPspTask'