15 Jan 2020 11:41:55,427 INFO : Re-running LINCS pipeline on PSP for: LINCS_P100_DIA_Plate91_Pweb
15 Jan 2020 11:41:55,439 INFO : =======================================
15 Jan 2020 11:45:24,248 INFO : Starting to run task 'org.labkey.lincs.psp.LincsPspTask' at location 'webserver-high-priority'
15 Jan 2020 11:45:24,248 INFO : Running LINCS PSP pipeline for LINCS_P100_DIA_Plate91_Pweb
15 Jan 2020 11:45:24,248 INFO : Resubmitting job for runId: 80656, name: LINCS_P100_DIA_Plate91_Pweb
15 Jan 2020 11:45:24,248 INFO : Old job details:
15 Jan 2020 11:45:24,248 INFO : Id: 294
15 Jan 2020 11:45:24,249 INFO : Pipeline job Id: 81285
15 Jan 2020 11:45:24,249 INFO : Run Id: 80656
15 Jan 2020 11:45:24,249 INFO : PSP Job Id: 5e1781b05beec6001388e4c8
15 Jan 2020 11:45:24,249 INFO : PSP Job name: LINCS_P100_DIA_Plate91_Pweb_test4
15 Jan 2020 11:45:24,249 INFO : PSP Job status: created LVL2 GCT
15 Jan 2020 11:45:24,249 INFO : JSON: {"level 4":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS-DCIC/PSP/P100/%40files/GCT/LINCS_P100_DIA_Plate91_Pweb_LVL4.gct"}},"assay":"P100","created":"2020-01-09T19:40:32.960Z","name":"LINCS_P100_DIA_Plate91_Pweb_test4","id":"5e1781b05beec6001388e4c8","last_modified":"2020-01-09T19:43:56.912Z","config":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS-DCIC/PSP/P100/%40files/GCT/LINCS_P100_DIA_Plate91_Pweb.cfg"}},"level 2":{"s3":{"url":"s3://proteomics.clue.io/psp/level2/LINCS_P100_DIA_Plate91_Pweb_test4_LVL2.gct"},"panorama":{"method":"GET","url":"https://panoramaweb.org/lincs/LINCS-DCIC/PSP/P100/runGCTReportApi.view?runId=80656&remote=true&reportName=GCT%20File%20P100"}},"status":"created LVL2 GCT","level 3":{"s3":{"message":"dry error: need more than 1 value to unpack"},"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS-DCIC/PSP/P100/%40files/GCT/LINCS_P100_DIA_Plate91_Pweb_LVL3.gct"}}}
15 Jan 2020 11:45:24,249 INFO : Resubmitting...
15 Jan 2020 11:45:24,252 INFO : Looking for existing job with name LINCS_P100_DIA_Plate91_Pweb_test4
15 Jan 2020 11:45:24,623 INFO : Job with name LINCS_P100_DIA_Plate91_Pweb_test4exists.
15 Jan 2020 11:45:24,623 INFO : Looking for existing job with name LINCS_P100_DIA_Plate91_Pweb_test4_2
15 Jan 2020 11:45:24,746 INFO : PSP job name: LINCS_P100_DIA_Plate91_Pweb_test4_2
15 Jan 2020 11:45:24,747 INFO : Sending JSON:
15 Jan 2020 11:45:24,747 INFO : {
"level 4": {"panorama": {
"method": "PUT",
"url": "https://panoramaweb.org/_webdav/LINCS-DCIC/PSP/P100/%40files/GCT/LINCS_P100_DIA_Plate91_Pweb_LVL4.gct"
}},
"assay": "P100",
"name": "LINCS_P100_DIA_Plate91_Pweb_test4_2",
"config": {"panorama": {
"method": "PUT",
"url": "https://panoramaweb.org/_webdav/LINCS-DCIC/PSP/P100/%40files/GCT/LINCS_P100_DIA_Plate91_Pweb.cfg"
}},
"level 2": {"panorama": {
"method": "GET",
"url": "https://panoramaweb.org/lincs/LINCS-DCIC/PSP/P100/runGCTReportApi.view?runId=80656&remote=true&reportName=GCT%20File%20P100"
}},
"level 3": {"panorama": {
"method": "PUT",
"url": "https://panoramaweb.org/_webdav/LINCS-DCIC/PSP/P100/%40files/GCT/LINCS_P100_DIA_Plate91_Pweb_LVL3.gct"
}}
}
15 Jan 2020 11:45:24,747 INFO : Sending POST request to https://api.clue.io/api/psp
15 Jan 2020 11:45:25,029 INFO : Response code - 200
15 Jan 2020 11:45:25,029 INFO : Response from server: {"name":"LINCS_P100_DIA_Plate91_Pweb_test4_2","assay":"P100","status":"Waiting_To_Download","id":"5e1f6bd45beec6001388e724","created":"2020-01-15T19:45:24.818Z","last_modified":"2020-01-15T19:45:24.818Z","level 2":{"panorama":{"method":"GET","url":"https://panoramaweb.org/lincs/LINCS-DCIC/PSP/P100/runGCTReportApi.view?runId=80656&remote=true&reportName=GCT%20File%20P100"}},"level 3":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS-DCIC/PSP/P100/%40files/GCT/LINCS_P100_DIA_Plate91_Pweb_LVL3.gct"}},"level 4":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS-DCIC/PSP/P100/%40files/GCT/LINCS_P100_DIA_Plate91_Pweb_LVL4.gct"}},"config":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS-DCIC/PSP/P100/%40files/GCT/LINCS_P100_DIA_Plate91_Pweb.cfg"}}}
15 Jan 2020 11:45:25,030 INFO : Sent POST request to https://api.clue.io/api/psp
15 Jan 2020 11:45:25,032 INFO : Checking status of job 5e1f6bd45beec6001388e724
15 Jan 2020 11:45:25,158 INFO : Status: Waiting_To_Download
15 Jan 2020 11:45:45,159 INFO : Checking status of job 5e1f6bd45beec6001388e724
15 Jan 2020 11:45:45,445 INFO : Status: created LVL2 GCT
15 Jan 2020 11:46:05,446 INFO : Checking status of job 5e1f6bd45beec6001388e724
15 Jan 2020 11:46:05,731 INFO : Status: created LVL2 GCT
15 Jan 2020 11:46:25,732 INFO : Checking status of job 5e1f6bd45beec6001388e724
15 Jan 2020 11:46:26,011 INFO : Status: created LVL2 GCT
15 Jan 2020 11:46:46,011 INFO : Checking status of job 5e1f6bd45beec6001388e724
15 Jan 2020 11:46:46,288 INFO : Status: created LVL2 GCT
15 Jan 2020 11:47:06,288 INFO : Checking status of job 5e1f6bd45beec6001388e724
15 Jan 2020 11:47:06,561 INFO : Status: created LVL2 GCT
15 Jan 2020 11:47:26,561 INFO : Checking status of job 5e1f6bd45beec6001388e724
15 Jan 2020 11:47:26,836 INFO : Status: created LVL2 GCT
15 Jan 2020 11:47:46,836 INFO : Checking status of job 5e1f6bd45beec6001388e724
15 Jan 2020 11:47:47,111 INFO : Status: created LVL2 GCT
15 Jan 2020 11:48:07,112 INFO : Checking status of job 5e1f6bd45beec6001388e724
15 Jan 2020 11:48:07,470 INFO : Status: created LVL2 GCT
15 Jan 2020 11:48:27,471 INFO : Checking status of job 5e1f6bd45beec6001388e724
15 Jan 2020 11:48:27,758 INFO : Status: created LVL2 GCT
15 Jan 2020 11:48:47,759 INFO : Checking status of job 5e1f6bd45beec6001388e724
15 Jan 2020 11:48:48,045 INFO : Status: created LVL2 GCT
15 Jan 2020 11:49:08,045 INFO : Checking status of job 5e1f6bd45beec6001388e724
15 Jan 2020 11:49:08,326 INFO : Status: created LVL2 GCT
15 Jan 2020 11:49:08,326 ERROR: Error in PSP job. Error: level 3: dry error: need more than 1 value to unpack
15 Jan 2020 11:49:08,442 INFO : Finished running LINCS PSP pipeline.
15 Jan 2020 11:49:08,442 INFO : Successfully completed task 'org.labkey.lincs.psp.LincsPspTask'