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Running LINCS pipeline on PSP for: LINCS_P100_DIA_Plate91_Broad

P100

Job Status

Created: 2020-01-09 11:40:32
Modified: 2020-01-09 11:44:37
Email: vsharma@uw.edu
Status: ERROR
Info: Error in PSP job. Error: level 3: dry error: All samples were filtered out. Try reducing the threshold.
Description: Running LINCS pipeline on PSP for: LINCS_P100_DIA_Plate91_Broad
File Path: /data/labkey/files/LINCS-DCIC/PSP/P100/@files/LincsPSP_LINCS_P100_DIA_Plate91_Broad_2020-01-09_11-40-32.log
Files: LincsPSP_LINCS_P100_DIA_Plate91_Broad_2020-01-09_11-40-32.log
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Log File


09 Jan 2020 11:40:32,454 INFO : Running LINCS pipeline on PSP for:  LINCS_P100_DIA_Plate91_Broad
09 Jan 2020 11:40:32,454 INFO : =======================================
09 Jan 2020 11:44:16,527 INFO : Starting to run task 'org.labkey.lincs.psp.LincsPspTask' at location 'webserver-high-priority'
09 Jan 2020 11:44:16,527 INFO : Running LINCS PSP pipeline for LINCS_P100_DIA_Plate91_Broad
09 Jan 2020 11:44:16,527 INFO : Submitting job for runId: 80657, name: LINCS_P100_DIA_Plate91_Broad
09 Jan 2020 11:44:16,530 INFO : Looking for existing job with name LINCS_P100_DIA_Plate91_Broad_test4
09 Jan 2020 11:44:16,650 INFO : PSP job name: LINCS_P100_DIA_Plate91_Broad_test4
09 Jan 2020 11:44:16,651 INFO : Sending JSON:
09 Jan 2020 11:44:16,651 INFO : {
  "level 4": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS-DCIC/PSP/P100/%40files/GCT/LINCS_P100_DIA_Plate91_Broad_LVL4.gct"
  }},
  "assay": "P100",
  "name": "LINCS_P100_DIA_Plate91_Broad_test4",
  "config": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS-DCIC/PSP/P100/%40files/GCT/LINCS_P100_DIA_Plate91_Broad.cfg"
  }},
  "level 2": {"panorama": {
    "method": "GET",
    "url": "https://panoramaweb.org/lincs/LINCS-DCIC/PSP/P100/runGCTReportApi.view?runId=80657&remote=true&reportName=GCT%20File%20P100"
  }},
  "level 3": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS-DCIC/PSP/P100/%40files/GCT/LINCS_P100_DIA_Plate91_Broad_LVL3.gct"
  }}
}
09 Jan 2020 11:44:16,651 INFO : Sending POST request to https://api.clue.io/api/psp
09 Jan 2020 11:44:16,837 INFO : Response code - 200
09 Jan 2020 11:44:16,838 INFO : Response from server: {"name":"LINCS_P100_DIA_Plate91_Broad_test4","assay":"P100","status":"Waiting_To_Download","id":"5e1782905beec6001388e4c9","created":"2020-01-09T19:44:16.718Z","last_modified":"2020-01-09T19:44:16.718Z","level 2":{"panorama":{"method":"GET","url":"https://panoramaweb.org/lincs/LINCS-DCIC/PSP/P100/runGCTReportApi.view?runId=80657&remote=true&reportName=GCT%20File%20P100"}},"level 3":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS-DCIC/PSP/P100/%40files/GCT/LINCS_P100_DIA_Plate91_Broad_LVL3.gct"}},"level 4":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS-DCIC/PSP/P100/%40files/GCT/LINCS_P100_DIA_Plate91_Broad_LVL4.gct"}},"config":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS-DCIC/PSP/P100/%40files/GCT/LINCS_P100_DIA_Plate91_Broad.cfg"}}}
09 Jan 2020 11:44:16,838 INFO : Sent POST request to https://api.clue.io/api/psp
09 Jan 2020 11:44:16,844 INFO : Checking status of job 5e1782905beec6001388e4c9
09 Jan 2020 11:44:16,961 INFO : Status: Waiting_To_Download
09 Jan 2020 11:44:36,961 INFO : Checking status of job 5e1782905beec6001388e4c9
09 Jan 2020 11:44:37,312 INFO : Status: created LVL2 GCT
09 Jan 2020 11:44:37,312 ERROR: Error in PSP job. Error: level 3: dry error: All samples were filtered out. Try reducing the threshold.
09 Jan 2020 11:44:37,550 INFO : Finished running LINCS PSP pipeline.
09 Jan 2020 11:44:37,550 INFO : Successfully completed task 'org.labkey.lincs.psp.LincsPspTask'