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Running LINCS pipeline on PSP for: LINCS_P100_DIA_Plate91_annotated_minimized_2020-01-02_12-26-50

P100

Job Status

Created: 2020-01-08 20:47:36
Modified: 2020-01-08 20:51:20
Email: vsharma@uw.edu
Status: ERROR
Info: Error in PSP job. Error: level 3: dry error: All samples were filtered out. Try reducing the threshold.
Description: Running LINCS pipeline on PSP for: LINCS_P100_DIA_Plate91_annotated_minimized_2020-01-02_12-26-50
File Path: /data/labkey/files/LINCS-DCIC/PSP/P100/@files/LincsPSP_LINCS_P100_DIA_Plate91_annotated_minimized_2020-01-02_12-26-50_2020-01-08_20-47-36.log
Files: LincsPSP_LINCS_P100_DIA_Plate91_annotated_minimized_2020-01-02_12-26-50_2020-01-08_20-47-36.log
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Log File


08 Jan 2020 20:47:36,802 INFO : Running LINCS pipeline on PSP for:  LINCS_P100_DIA_Plate91_annotated_minimized_2020-01-02_12-26-50
08 Jan 2020 20:47:36,803 INFO : =======================================
08 Jan 2020 20:47:37,017 INFO : Starting to run task 'org.labkey.lincs.psp.LincsPspTask' at location 'webserver-high-priority'
08 Jan 2020 20:47:37,017 INFO : Running LINCS PSP pipeline for LINCS_P100_DIA_Plate91_annotated_minimized_2020-01-02_12-26-50
08 Jan 2020 20:47:37,017 INFO : Submitting job for runId: 80634, name: LINCS_P100_DIA_Plate91_annotated_minimized_2020-01-02_12-26-50
08 Jan 2020 20:47:37,019 INFO : Looking for existing job with name LINCS_P100_DIA_Plate91_annotated_minimized_2020-01-02_12-26-50_test4
08 Jan 2020 20:47:37,382 INFO : PSP job name: LINCS_P100_DIA_Plate91_annotated_minimized_2020-01-02_12-26-50_test4
08 Jan 2020 20:47:37,382 INFO : Sending JSON:
08 Jan 2020 20:47:37,382 INFO : {
  "level 4": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS-DCIC/PSP/P100/%40files/GCT/LINCS_P100_DIA_Plate91_annotated_minimized_2020-01-02_12-26-50_LVL4.gct"
  }},
  "assay": "P100",
  "name": "LINCS_P100_DIA_Plate91_annotated_minimized_2020-01-02_12-26-50_test4",
  "config": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS-DCIC/PSP/P100/%40files/GCT/LINCS_P100_DIA_Plate91_annotated_minimized_2020-01-02_12-26-50.cfg"
  }},
  "level 2": {"panorama": {
    "method": "GET",
    "url": "https://panoramaweb.org/lincs/LINCS-DCIC/PSP/P100/runGCTReportApi.view?runId=80634&remote=true&reportName=GCT%20File%20P100"
  }},
  "level 3": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS-DCIC/PSP/P100/%40files/GCT/LINCS_P100_DIA_Plate91_annotated_minimized_2020-01-02_12-26-50_LVL3.gct"
  }}
}
08 Jan 2020 20:47:37,383 INFO : Sending POST request to https://api.clue.io/api/psp
08 Jan 2020 20:47:37,605 INFO : Response code - 200
08 Jan 2020 20:47:37,605 INFO : Response from server: {"name":"LINCS_P100_DIA_Plate91_annotated_minimized_2020-01-02_12-26-50_test4","assay":"P100","status":"Waiting_To_Download","id":"5e16b0699351020013cb8908","created":"2020-01-09T04:47:37.451Z","last_modified":"2020-01-09T04:47:37.451Z","level 2":{"panorama":{"method":"GET","url":"https://panoramaweb.org/lincs/LINCS-DCIC/PSP/P100/runGCTReportApi.view?runId=80634&remote=true&reportName=GCT%20File%20P100"}},"level 3":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS-DCIC/PSP/P100/%40files/GCT/LINCS_P100_DIA_Plate91_annotated_minimized_2020-01-02_12-26-50_LVL3.gct"}},"level 4":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS-DCIC/PSP/P100/%40files/GCT/LINCS_P100_DIA_Plate91_annotated_minimized_2020-01-02_12-26-50_LVL4.gct"}},"config":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS-DCIC/PSP/P100/%40files/GCT/LINCS_P100_DIA_Plate91_annotated_minimized_2020-01-02_12-26-50.cfg"}}}
08 Jan 2020 20:47:37,605 INFO : Sent POST request to https://api.clue.io/api/psp
08 Jan 2020 20:47:37,608 INFO : Checking status of job 5e16b0699351020013cb8908
08 Jan 2020 20:47:37,728 INFO : Status: Waiting_To_Download
08 Jan 2020 20:47:57,728 INFO : Checking status of job 5e16b0699351020013cb8908
08 Jan 2020 20:47:58,000 INFO : Status: created LVL2 GCT
08 Jan 2020 20:48:18,000 INFO : Checking status of job 5e16b0699351020013cb8908
08 Jan 2020 20:48:18,284 INFO : Status: created LVL2 GCT
08 Jan 2020 20:48:38,284 INFO : Checking status of job 5e16b0699351020013cb8908
08 Jan 2020 20:48:38,556 INFO : Status: created LVL2 GCT
08 Jan 2020 20:48:58,556 INFO : Checking status of job 5e16b0699351020013cb8908
08 Jan 2020 20:48:58,924 INFO : Status: created LVL2 GCT
08 Jan 2020 20:49:18,924 INFO : Checking status of job 5e16b0699351020013cb8908
08 Jan 2020 20:49:19,203 INFO : Status: created LVL2 GCT
08 Jan 2020 20:49:39,203 INFO : Checking status of job 5e16b0699351020013cb8908
08 Jan 2020 20:49:39,483 INFO : Status: created LVL2 GCT
08 Jan 2020 20:49:59,483 INFO : Checking status of job 5e16b0699351020013cb8908
08 Jan 2020 20:49:59,757 INFO : Status: created LVL2 GCT
08 Jan 2020 20:50:19,758 INFO : Checking status of job 5e16b0699351020013cb8908
08 Jan 2020 20:50:20,107 INFO : Status: created LVL2 GCT
08 Jan 2020 20:50:40,107 INFO : Checking status of job 5e16b0699351020013cb8908
08 Jan 2020 20:50:40,386 INFO : Status: created LVL2 GCT
08 Jan 2020 20:51:00,386 INFO : Checking status of job 5e16b0699351020013cb8908
08 Jan 2020 20:51:00,666 INFO : Status: created LVL2 GCT
08 Jan 2020 20:51:20,667 INFO : Checking status of job 5e16b0699351020013cb8908
08 Jan 2020 20:51:20,944 INFO : Status: created LVL2 GCT
08 Jan 2020 20:51:20,945 ERROR: Error in PSP job. Error: level 3: dry error: All samples were filtered out. Try reducing the threshold.
08 Jan 2020 20:51:21,485 INFO : Finished running LINCS PSP pipeline.
08 Jan 2020 20:51:21,486 INFO : Successfully completed task 'org.labkey.lincs.psp.LincsPspTask'