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Running LINCS pipeline on PSP for: LINCS_P100_DIA_Plate70_annotated_minimized_2019-06-03_13-47-33

P100

Job Status

Created: 2019-06-08 22:29:33
Modified: 2019-06-08 22:30:14
Email: vsharma@uw.edu
Status: COMPLETE
Info:
Description: Running LINCS pipeline on PSP for: LINCS_P100_DIA_Plate70_annotated_minimized_2019-06-03_13-47-33
File Path: /data/labkey/files/LINCS-DCIC/PSP/P100/@files/LincsPSP_LINCS_P100_DIA_Plate70_annotated_minimized_2019-06-03_13-47-33_2019-06-08_22-29-33.log
Files: LincsPSP_LINCS_P100_DIA_Plate70_annotated_minimized_2019-06-03_13-47-33_2019-06-08_22-29-33.log
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Log File


08 Jun 2019 22:29:33,481 INFO : Running LINCS pipeline on PSP for:  LINCS_P100_DIA_Plate70_annotated_minimized_2019-06-03_13-47-33
08 Jun 2019 22:29:33,482 INFO : =======================================
08 Jun 2019 22:29:33,585 INFO : Starting to run task 'org.labkey.lincs.psp.LincsPspTask' at location 'webserver-high-priority'
08 Jun 2019 22:29:33,585 INFO : Running LINCS PSP pipeline for LINCS_P100_DIA_Plate70_annotated_minimized_2019-06-03_13-47-33
08 Jun 2019 22:29:33,586 INFO : Submitting job for runId: 67766, name: LINCS_P100_DIA_Plate70_annotated_minimized_2019-06-03_13-47-33
08 Jun 2019 22:29:33,588 INFO : Looking for existing job with name LINCS_P100_DIA_Plate70_annotated_minimized_2019-06-03_13-47-33_test4
08 Jun 2019 22:29:33,919 INFO : PSP job name: LINCS_P100_DIA_Plate70_annotated_minimized_2019-06-03_13-47-33_test4
08 Jun 2019 22:29:33,920 INFO : Sending JSON:
08 Jun 2019 22:29:33,920 INFO : {
  "level 4": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS-DCIC/PSP/P100/%40files/GCT/LINCS_P100_DIA_Plate70_annotated_minimized_2019-06-03_13-47-33_LVL4.gct"
  }},
  "assay": "P100",
  "name": "LINCS_P100_DIA_Plate70_annotated_minimized_2019-06-03_13-47-33_test4",
  "config": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS-DCIC/PSP/P100/%40files/GCT/LINCS_P100_DIA_Plate70_annotated_minimized_2019-06-03_13-47-33.cfg"
  }},
  "level 2": {"panorama": {
    "method": "GET",
    "url": "https://panoramaweb.org/lincs/LINCS-DCIC/PSP/P100/runGCTReportApi.view?runId=67766&remote=true&reportName=GCT%20File%20P100"
  }},
  "level 3": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS-DCIC/PSP/P100/%40files/GCT/LINCS_P100_DIA_Plate70_annotated_minimized_2019-06-03_13-47-33_LVL3.gct"
  }}
}
08 Jun 2019 22:29:33,921 INFO : Sending POST request to https://api.clue.io/api/psp
08 Jun 2019 22:29:34,089 INFO : Response code - 200
08 Jun 2019 22:29:34,089 INFO : Response from server: {"name":"LINCS_P100_DIA_Plate70_annotated_minimized_2019-06-03_13-47-33_test4","assay":"P100","status":"Waiting_To_Download","id":"5cfc993d344c151e38c98ccc","created":"2019-06-09T05:29:33.983Z","last_modified":"2019-06-09T05:29:33.983Z","level 2":{"panorama":{"method":"GET","url":"https://panoramaweb.org/lincs/LINCS-DCIC/PSP/P100/runGCTReportApi.view?runId=67766&remote=true&reportName=GCT%20File%20P100"}},"level 3":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS-DCIC/PSP/P100/%40files/GCT/LINCS_P100_DIA_Plate70_annotated_minimized_2019-06-03_13-47-33_LVL3.gct"}},"level 4":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS-DCIC/PSP/P100/%40files/GCT/LINCS_P100_DIA_Plate70_annotated_minimized_2019-06-03_13-47-33_LVL4.gct"}},"config":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS-DCIC/PSP/P100/%40files/GCT/LINCS_P100_DIA_Plate70_annotated_minimized_2019-06-03_13-47-33.cfg"}}}
08 Jun 2019 22:29:34,090 INFO : Sent POST request to https://api.clue.io/api/psp
08 Jun 2019 22:29:34,092 INFO : Checking status of job 5cfc993d344c151e38c98ccc
08 Jun 2019 22:29:34,203 INFO : Status: Waiting_To_Download
08 Jun 2019 22:29:54,204 INFO : Checking status of job 5cfc993d344c151e38c98ccc
08 Jun 2019 22:29:54,453 INFO : Status: created LVL 4 GCT
08 Jun 2019 22:30:14,454 INFO : Checking status of job 5cfc993d344c151e38c98ccc
08 Jun 2019 22:30:14,704 INFO : Status: POUR : succeeded in uploading all GCTs to Panorama
08 Jun 2019 22:30:14,704 INFO : PSP job completed with status: POUR : succeeded in uploading all GCTs to Panorama
08 Jun 2019 22:30:14,704 INFO : Finished running LINCS PSP pipeline.
08 Jun 2019 22:30:14,705 INFO : Successfully completed task 'org.labkey.lincs.psp.LincsPspTask'