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Running LINCS pipeline on PSP for: LINCS_P100_DIA_Plate82_annotated_minimized_2019-06-03_16-03-24

P100

Job Status

Created: 2019-06-08 22:02:00
Modified: 2019-06-08 22:06:48
Email: vsharma@uw.edu
Status: COMPLETE
Info:
Description: Running LINCS pipeline on PSP for: LINCS_P100_DIA_Plate82_annotated_minimized_2019-06-03_16-03-24
File Path: /data/labkey/files/LINCS-DCIC/PSP/P100/@files/LincsPSP_LINCS_P100_DIA_Plate82_annotated_minimized_2019-06-03_16-03-24_2019-06-08_22-01-59.log
Files: LincsPSP_LINCS_P100_DIA_Plate82_annotated_minimized_2019-06-03_16-03-24_2019-06-08_22-01-59.log
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Log File


08 Jun 2019 22:02:00,441 INFO : Running LINCS pipeline on PSP for:  LINCS_P100_DIA_Plate82_annotated_minimized_2019-06-03_16-03-24
08 Jun 2019 22:02:00,441 INFO : =======================================
08 Jun 2019 22:03:25,482 INFO : Starting to run task 'org.labkey.lincs.psp.LincsPspTask' at location 'webserver-high-priority'
08 Jun 2019 22:03:25,483 INFO : Running LINCS PSP pipeline for LINCS_P100_DIA_Plate82_annotated_minimized_2019-06-03_16-03-24
08 Jun 2019 22:03:25,483 INFO : Submitting job for runId: 67764, name: LINCS_P100_DIA_Plate82_annotated_minimized_2019-06-03_16-03-24
08 Jun 2019 22:03:25,486 INFO : Looking for existing job with name LINCS_P100_DIA_Plate82_annotated_minimized_2019-06-03_16-03-24_test4
08 Jun 2019 22:03:25,957 INFO : PSP job name: LINCS_P100_DIA_Plate82_annotated_minimized_2019-06-03_16-03-24_test4
08 Jun 2019 22:03:25,957 INFO : Sending JSON:
08 Jun 2019 22:03:25,958 INFO : {
  "level 4": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS-DCIC/PSP/P100/%40files/GCT/LINCS_P100_DIA_Plate82_annotated_minimized_2019-06-03_16-03-24_LVL4.gct"
  }},
  "assay": "P100",
  "name": "LINCS_P100_DIA_Plate82_annotated_minimized_2019-06-03_16-03-24_test4",
  "config": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS-DCIC/PSP/P100/%40files/GCT/LINCS_P100_DIA_Plate82_annotated_minimized_2019-06-03_16-03-24.cfg"
  }},
  "level 2": {"panorama": {
    "method": "GET",
    "url": "https://panoramaweb.org/lincs/LINCS-DCIC/PSP/P100/runGCTReportApi.view?runId=67764&remote=true&reportName=GCT%20File%20P100"
  }},
  "level 3": {"panorama": {
    "method": "PUT",
    "url": "https://panoramaweb.org/_webdav/LINCS-DCIC/PSP/P100/%40files/GCT/LINCS_P100_DIA_Plate82_annotated_minimized_2019-06-03_16-03-24_LVL3.gct"
  }}
}
08 Jun 2019 22:03:25,958 INFO : Sending POST request to https://api.clue.io/api/psp
08 Jun 2019 22:03:26,206 INFO : Response code - 200
08 Jun 2019 22:03:26,207 INFO : Response from server: {"name":"LINCS_P100_DIA_Plate82_annotated_minimized_2019-06-03_16-03-24_test4","assay":"P100","status":"Waiting_To_Download","id":"5cfc931e344c151e38c98cc6","created":"2019-06-09T05:03:26.031Z","last_modified":"2019-06-09T05:03:26.031Z","level 2":{"panorama":{"method":"GET","url":"https://panoramaweb.org/lincs/LINCS-DCIC/PSP/P100/runGCTReportApi.view?runId=67764&remote=true&reportName=GCT%20File%20P100"}},"level 3":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS-DCIC/PSP/P100/%40files/GCT/LINCS_P100_DIA_Plate82_annotated_minimized_2019-06-03_16-03-24_LVL3.gct"}},"level 4":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS-DCIC/PSP/P100/%40files/GCT/LINCS_P100_DIA_Plate82_annotated_minimized_2019-06-03_16-03-24_LVL4.gct"}},"config":{"panorama":{"method":"PUT","url":"https://panoramaweb.org/_webdav/LINCS-DCIC/PSP/P100/%40files/GCT/LINCS_P100_DIA_Plate82_annotated_minimized_2019-06-03_16-03-24.cfg"}}}
08 Jun 2019 22:03:26,208 INFO : Sent POST request to https://api.clue.io/api/psp
08 Jun 2019 22:03:26,211 INFO : Checking status of job 5cfc931e344c151e38c98cc6
08 Jun 2019 22:03:26,320 INFO : Status: Waiting_To_Download
08 Jun 2019 22:03:46,321 INFO : Checking status of job 5cfc931e344c151e38c98cc6
08 Jun 2019 22:03:46,574 INFO : Status: created LVL2 GCT
08 Jun 2019 22:04:06,574 INFO : Checking status of job 5cfc931e344c151e38c98cc6
08 Jun 2019 22:04:06,841 INFO : Status: created LVL2 GCT
08 Jun 2019 22:04:26,842 INFO : Checking status of job 5cfc931e344c151e38c98cc6
08 Jun 2019 22:04:27,095 INFO : Status: created LVL2 GCT
08 Jun 2019 22:04:47,096 INFO : Checking status of job 5cfc931e344c151e38c98cc6
08 Jun 2019 22:04:47,360 INFO : Status: created LVL2 GCT
08 Jun 2019 22:05:07,361 INFO : Checking status of job 5cfc931e344c151e38c98cc6
08 Jun 2019 22:05:07,618 INFO : Status: created LVL2 GCT
08 Jun 2019 22:05:27,619 INFO : Checking status of job 5cfc931e344c151e38c98cc6
08 Jun 2019 22:05:27,870 INFO : Status: created LVL2 GCT
08 Jun 2019 22:05:47,871 INFO : Checking status of job 5cfc931e344c151e38c98cc6
08 Jun 2019 22:05:48,121 INFO : Status: created LVL2 GCT
08 Jun 2019 22:06:08,121 INFO : Checking status of job 5cfc931e344c151e38c98cc6
08 Jun 2019 22:06:08,371 INFO : Status: created LVL2 GCT
08 Jun 2019 22:06:28,372 INFO : Checking status of job 5cfc931e344c151e38c98cc6
08 Jun 2019 22:06:28,621 INFO : Status: created LVL 3 GCT
08 Jun 2019 22:06:48,622 INFO : Checking status of job 5cfc931e344c151e38c98cc6
08 Jun 2019 22:06:48,874 INFO : Status: POUR : succeeded in uploading all GCTs to Panorama
08 Jun 2019 22:06:48,874 INFO : PSP job completed with status: POUR : succeeded in uploading all GCTs to Panorama
08 Jun 2019 22:06:48,874 INFO : Finished running LINCS PSP pipeline.
08 Jun 2019 22:06:48,875 INFO : Successfully completed task 'org.labkey.lincs.psp.LincsPspTask'