12 May 2021 04:17:34,198 INFO : Starting to run task 'org.labkey.targetedms.pipeline.TargetedMSImportTask' at location 'webserver-high-priority'
12 May 2021 04:17:34,202 INFO : Starting to import Skyline document from 210512_Lysarginase_P100_upload_2021-05-12_13-17-23.sky.zip
12 May 2021 04:17:34,203 INFO : Expanding 210203_HumanProteomeUniprot.protdb
12 May 2021 04:17:36,871 INFO : Expanding Lysarginase_QTag_iRT.irtdb
12 May 2021 04:17:36,876 INFO : Expanding CollisionEnergy_optimerization_P100_Lysarginase.optdb
12 May 2021 04:17:36,879 INFO : Expanding 210304_P100_MM1_Lysarginase_Spectrallibrary.blib
12 May 2021 04:17:36,883 INFO : Expanding 210304_P100_MM2_Lysarginase_Spectrallibrary.blib
12 May 2021 04:17:36,886 INFO : Expanding 210304_P100_MM3_Lysarginase_Spectrallibrary.blib
12 May 2021 04:17:37,084 INFO : Expanding 210304_P100_MM4_Lysarginase_Spectrallibrary.blib
12 May 2021 04:17:37,088 INFO : Expanding 210512_Lysarginase_P100_upload.sky.view
12 May 2021 04:17:37,095 INFO : Expanding 210512_Lysarginase_P100_upload.sky
12 May 2021 04:17:37,098 INFO : Expanding 210512_Lysarginase_P100_upload.skyl
12 May 2021 04:17:37,114 INFO : 2% Done
12 May 2021 04:17:37,134 WARN : Unable to find file /data/labkey/files/KTH - Uhlen Lab/Alternative proteases -  Master's thesis/Lysarginase/@files/210512_Lysarginase_P100_upload_2021-05-12_13-17-23/210512_Lysarginase_P100_upload.skyd, unable to import chromatograms
12 May 2021 04:17:37,213 INFO : Inserting QTag
12 May 2021 04:17:37,264 INFO : 4% Done
12 May 2021 04:17:37,287 INFO : 5% Done
12 May 2021 04:17:37,299 DEBUG: Total peptides inserted: 7
12 May 2021 04:17:37,303 INFO : Inserting sp|O14791|APOL1_HUMAN
12 May 2021 04:17:37,307 INFO : 6% Done
12 May 2021 04:17:37,343 INFO : 7% Done
12 May 2021 04:17:37,365 INFO : 8% Done
12 May 2021 04:17:37,374 DEBUG: Total peptides inserted: 6
12 May 2021 04:17:37,377 INFO : Inserting sp|O43866|CD5L_HUMAN
12 May 2021 04:17:37,380 INFO : 9% Done
12 May 2021 04:17:37,396 DEBUG: Total peptides inserted: 2
12 May 2021 04:17:37,399 INFO : Inserting sp|P00747|PLMN_HUMAN
12 May 2021 04:17:37,402 INFO : 10% Done
12 May 2021 04:17:37,409 DEBUG: Total peptides inserted: 1
12 May 2021 04:17:37,412 INFO : Inserting sp|P00751|CFAB_HUMAN
12 May 2021 04:17:37,415 INFO : 11% Done
12 May 2021 04:17:37,430 INFO : 12% Done
12 May 2021 04:17:37,453 DEBUG: Total peptides inserted: 4
12 May 2021 04:17:37,455 INFO : 13% Done
12 May 2021 04:17:37,458 INFO : Inserting sp|P01042|KNG1_HUMAN
12 May 2021 04:17:37,469 INFO : 14% Done
12 May 2021 04:17:37,479 DEBUG: Total peptides inserted: 2
12 May 2021 04:17:37,483 INFO : Inserting sp|P01591|IGJ_HUMAN
12 May 2021 04:17:37,504 INFO : 15% Done
12 May 2021 04:17:37,533 DEBUG: Total peptides inserted: 3
12 May 2021 04:17:37,535 INFO : 16% Done
12 May 2021 04:17:37,540 INFO : Inserting sp|P02760|AMBP_HUMAN
12 May 2021 04:17:37,562 DEBUG: Total peptides inserted: 2
12 May 2021 04:17:37,564 INFO : 17% Done
12 May 2021 04:17:37,567 INFO : Inserting sp|P04003|C4BPA_HUMAN
12 May 2021 04:17:37,581 INFO : 18% Done
12 May 2021 04:17:37,590 DEBUG: Total peptides inserted: 2
12 May 2021 04:17:37,594 INFO : Inserting sp|P04217|A1BG_HUMAN
12 May 2021 04:17:37,607 INFO : 19% Done
12 May 2021 04:17:37,614 DEBUG: Total peptides inserted: 2
12 May 2021 04:17:37,616 INFO : Inserting sp|P05160|F13B_HUMAN
12 May 2021 04:17:37,619 INFO : 20% Done
12 May 2021 04:17:37,627 DEBUG: Total peptides inserted: 1
12 May 2021 04:17:37,629 INFO : Inserting sp|P05452|TETN_HUMAN
12 May 2021 04:17:37,638 DEBUG: Total peptides inserted: 1
12 May 2021 04:17:37,641 INFO : Inserting sp|P07360|CO8G_HUMAN
12 May 2021 04:17:37,644 INFO : 21% Done
12 May 2021 04:17:37,652 DEBUG: Total peptides inserted: 1
12 May 2021 04:17:37,655 INFO : Inserting sp|P08603|CFAH_HUMAN
12 May 2021 04:17:37,658 INFO : 22% Done
12 May 2021 04:17:37,665 DEBUG: Total peptides inserted: 1
12 May 2021 04:17:37,667 INFO : Inserting sp|P08697|A2AP_HUMAN
12 May 2021 04:17:37,675 DEBUG: Total peptides inserted: 1
12 May 2021 04:17:37,677 INFO : 23% Done
12 May 2021 04:17:37,680 INFO : Inserting sp|P80108|PHLD_HUMAN
12 May 2021 04:17:37,688 DEBUG: Total peptides inserted: 1
12 May 2021 04:17:37,690 INFO : 24% Done
12 May 2021 04:17:37,692 INFO : Inserting sp|Q04756|HGFA_HUMAN
12 May 2021 04:17:37,707 DEBUG: Total peptides inserted: 2
12 May 2021 04:17:37,709 INFO : 25% Done
12 May 2021 04:17:37,712 INFO : Inserting sp|Q12805|FBLN3_HUMAN
12 May 2021 04:17:37,719 DEBUG: Total peptides inserted: 1
12 May 2021 04:17:37,723 INFO : Inserting sp|Q6EMK4|VASN_HUMAN
12 May 2021 04:17:37,731 DEBUG: Total peptides inserted: 1
12 May 2021 04:17:37,732 INFO : Inserting sp|P00734|THRB_HUMAN
12 May 2021 04:17:37,735 INFO : 26% Done
12 May 2021 04:17:37,748 DEBUG: Total peptides inserted: 2
12 May 2021 04:17:37,751 INFO : 27% Done
12 May 2021 04:17:37,752 INFO : Inserting sp|P01008|ANT3_HUMAN
12 May 2021 04:17:37,760 DEBUG: Total peptides inserted: 1
12 May 2021 04:17:37,763 INFO : Inserting sp|P01019|ANGT_HUMAN
12 May 2021 04:17:37,766 INFO : 28% Done
12 May 2021 04:17:37,773 DEBUG: Total peptides inserted: 1
12 May 2021 04:17:37,775 INFO : Inserting sp|P02671|FIBA_HUMAN
12 May 2021 04:17:37,777 INFO : 29% Done
12 May 2021 04:17:37,800 INFO : 30% Done
12 May 2021 04:17:37,813 DEBUG: Total peptides inserted: 3
12 May 2021 04:17:37,815 INFO : Inserting sp|P02790|HEMO_HUMAN
12 May 2021 04:17:37,818 INFO : 31% Done
12 May 2021 04:17:37,831 DEBUG: Total peptides inserted: 2
12 May 2021 04:17:37,833 INFO : 32% Done
12 May 2021 04:17:37,835 INFO : Inserting sp|P03951|FA11_HUMAN
12 May 2021 04:17:37,843 DEBUG: Total peptides inserted: 1
12 May 2021 04:17:37,845 INFO : Inserting sp|P04196|HRG_HUMAN
12 May 2021 04:17:37,848 INFO : 33% Done
12 May 2021 04:17:37,861 DEBUG: Total peptides inserted: 1
12 May 2021 04:17:37,863 INFO : Inserting sp|P05546|HEP2_HUMAN
12 May 2021 04:17:37,865 INFO : 34% Done
12 May 2021 04:17:37,872 DEBUG: Total peptides inserted: 1
12 May 2021 04:17:37,874 INFO : Inserting sp|P07357|CO8A_HUMAN
12 May 2021 04:17:37,876 INFO : 35% Done
12 May 2021 04:17:37,882 DEBUG: Total peptides inserted: 1
12 May 2021 04:17:37,885 INFO : Inserting sp|P09871|C1S_HUMAN
12 May 2021 04:17:37,894 INFO : 36% Done
12 May 2021 04:17:37,900 DEBUG: Total peptides inserted: 2
12 May 2021 04:17:37,902 INFO : Inserting sp|P20851|C4BPB_HUMAN
12 May 2021 04:17:37,912 INFO : 37% Done
12 May 2021 04:17:37,922 DEBUG: Total peptides inserted: 2
12 May 2021 04:17:37,926 INFO : Inserting sp|P35542|SAA4_HUMAN
12 May 2021 04:17:37,930 INFO : 38% Done
12 May 2021 04:17:37,942 DEBUG: Total peptides inserted: 1
12 May 2021 04:17:37,946 INFO : Inserting sp|Q15582|BGH3_HUMAN
12 May 2021 04:17:37,961 INFO : 39% Done
12 May 2021 04:17:37,972 DEBUG: Total peptides inserted: 2
12 May 2021 04:17:37,975 INFO : Inserting sp|Q16610|ECM1_HUMAN
12 May 2021 04:17:37,988 INFO : 40% Done
12 May 2021 04:17:38,009 INFO : 41% Done
12 May 2021 04:17:38,017 DEBUG: Total peptides inserted: 4
12 May 2021 04:17:38,020 INFO : Inserting sp|Q9HDC9|APMAP_HUMAN
12 May 2021 04:17:38,024 INFO : 42% Done
12 May 2021 04:17:38,032 DEBUG: Total peptides inserted: 1
12 May 2021 04:17:38,035 INFO : Inserting sp|Q9NPH3|IL1AP_HUMAN
12 May 2021 04:17:38,044 DEBUG: Total peptides inserted: 1
12 May 2021 04:17:38,046 INFO : 43% Done
12 May 2021 04:17:38,048 INFO : Inserting sp|O75882|ATRN_HUMAN
12 May 2021 04:17:38,059 INFO : 44% Done
12 May 2021 04:17:38,072 DEBUG: Total peptides inserted: 3
12 May 2021 04:17:38,074 INFO : 45% Done
12 May 2021 04:17:38,076 INFO : Inserting sp|P00742|FA10_HUMAN
12 May 2021 04:17:38,086 INFO : 46% Done
12 May 2021 04:17:38,114 DEBUG: Total peptides inserted: 3
12 May 2021 04:17:38,119 INFO : Inserting sp|P00746|CFAD_HUMAN
12 May 2021 04:17:38,123 INFO : 47% Done
12 May 2021 04:17:38,134 DEBUG: Total peptides inserted: 1
12 May 2021 04:17:38,139 INFO : Inserting sp|P02749|APOH_HUMAN
12 May 2021 04:17:38,150 DEBUG: Total peptides inserted: 1
12 May 2021 04:17:38,153 INFO : 48% Done
12 May 2021 04:17:38,156 INFO : Inserting sp|P04278|SHBG_HUMAN
12 May 2021 04:17:38,175 DEBUG: Total peptides inserted: 2
12 May 2021 04:17:38,178 INFO : 49% Done
12 May 2021 04:17:38,182 INFO : Inserting sp|P05156|CFAI_HUMAN
12 May 2021 04:17:38,195 INFO : 50% Done
12 May 2021 04:17:38,213 INFO : 51% Done
12 May 2021 04:17:38,227 DEBUG: Total peptides inserted: 4
12 May 2021 04:17:38,230 INFO : Inserting sp|P05543|THBG_HUMAN
12 May 2021 04:17:38,233 INFO : 52% Done
12 May 2021 04:17:38,241 DEBUG: Total peptides inserted: 1
12 May 2021 04:17:38,243 INFO : Inserting sp|P07359|GP1BA_HUMAN
12 May 2021 04:17:38,252 DEBUG: Total peptides inserted: 1
12 May 2021 04:17:38,254 INFO : 53% Done
12 May 2021 04:17:38,257 INFO : Inserting sp|P10909|CLUS_HUMAN
12 May 2021 04:17:38,267 INFO : 54% Done
12 May 2021 04:17:38,275 DEBUG: Total peptides inserted: 2
12 May 2021 04:17:38,277 INFO : Inserting sp|P19823|ITIH2_HUMAN
12 May 2021 04:17:38,287 INFO : 55% Done
12 May 2021 04:17:38,295 DEBUG: Total peptides inserted: 2
12 May 2021 04:17:38,297 INFO : Inserting sp|P20742|PZP_HUMAN
12 May 2021 04:17:38,300 INFO : 56% Done
12 May 2021 04:17:38,317 INFO : 57% Done
12 May 2021 04:17:38,324 DEBUG: Total peptides inserted: 3
12 May 2021 04:17:38,326 INFO : Inserting sp|P22792|CPN2_HUMAN
12 May 2021 04:17:38,335 INFO : 58% Done
12 May 2021 04:17:38,342 DEBUG: Total peptides inserted: 2
12 May 2021 04:17:38,344 INFO : Inserting sp|P27169|PON1_HUMAN
12 May 2021 04:17:38,346 INFO : 59% Done
12 May 2021 04:17:38,353 DEBUG: Total peptides inserted: 1
12 May 2021 04:17:38,355 INFO : Inserting sp|P43652|AFAM_HUMAN
12 May 2021 04:17:38,363 INFO : 60% Done
12 May 2021 04:17:38,368 DEBUG: Total peptides inserted: 2
12 May 2021 04:17:38,371 INFO : Inserting sp|P61626|LYSC_HUMAN
12 May 2021 04:17:38,378 DEBUG: Total peptides inserted: 1
12 May 2021 04:17:38,380 INFO : 61% Done
12 May 2021 04:17:38,382 INFO : Inserting sp|Q06033|ITIH3_HUMAN
12 May 2021 04:17:38,392 INFO : 62% Done
12 May 2021 04:17:38,399 DEBUG: Total peptides inserted: 2
12 May 2021 04:17:38,402 INFO : Inserting sp|Q92496|FHR4_HUMAN
12 May 2021 04:17:38,410 DEBUG: Total peptides inserted: 1
12 May 2021 04:17:38,412 INFO : 63% Done
12 May 2021 04:17:38,415 INFO : Inserting sp|O95445|APOM_HUMAN
12 May 2021 04:17:38,424 DEBUG: Total peptides inserted: 1
12 May 2021 04:17:38,426 INFO : Inserting sp|P00738|HPT_HUMAN
12 May 2021 04:17:38,428 INFO : 64% Done
12 May 2021 04:17:38,452 INFO : 65% Done
12 May 2021 04:17:38,469 INFO : 66% Done
12 May 2021 04:17:38,482 DEBUG: Total peptides inserted: 6
12 May 2021 04:17:38,484 INFO : 67% Done
12 May 2021 04:17:38,486 INFO : Inserting sp|P01009|A1AT_HUMAN
12 May 2021 04:17:38,503 INFO : 68% Done
12 May 2021 04:17:38,511 DEBUG: Total peptides inserted: 3
12 May 2021 04:17:38,513 INFO : Inserting sp|P01011|AACT_HUMAN
12 May 2021 04:17:38,517 INFO : 69% Done
12 May 2021 04:17:38,532 INFO : 70% Done
12 May 2021 04:17:38,539 DEBUG: Total peptides inserted: 3
12 May 2021 04:17:38,542 INFO : Inserting sp|P01023|A2MG_HUMAN
12 May 2021 04:17:38,545 INFO : 71% Done
12 May 2021 04:17:38,558 DEBUG: Total peptides inserted: 2
12 May 2021 04:17:38,560 INFO : 72% Done
12 May 2021 04:17:38,563 INFO : Inserting sp|P01031|CO5_HUMAN
12 May 2021 04:17:38,569 DEBUG: Total peptides inserted: 1
12 May 2021 04:17:38,572 INFO : Inserting sp|P01344|IGF2_HUMAN
12 May 2021 04:17:38,575 INFO : 73% Done
12 May 2021 04:17:38,582 DEBUG: Total peptides inserted: 1
12 May 2021 04:17:38,584 INFO : Inserting sp|P02647|APOA1_HUMAN
12 May 2021 04:17:38,607 INFO : 74% Done
12 May 2021 04:17:38,628 DEBUG: Total peptides inserted: 5
12 May 2021 04:17:38,631 INFO : Inserting sp|P02675|FIBB_HUMAN
12 May 2021 04:17:38,641 INFO : 75% Done
12 May 2021 04:17:38,658 INFO : 76% Done
12 May 2021 04:17:38,679 INFO : 77% Done
12 May 2021 04:17:38,686 DEBUG: Total peptides inserted: 6
12 May 2021 04:17:38,688 INFO : Inserting sp|P02679|FIBG_HUMAN
12 May 2021 04:17:38,691 INFO : 78% Done
12 May 2021 04:17:38,712 INFO : 79% Done
12 May 2021 04:17:38,727 DEBUG: Total peptides inserted: 5
12 May 2021 04:17:38,729 INFO : 80% Done
12 May 2021 04:17:38,731 INFO : Inserting sp|P02747|C1QC_HUMAN
12 May 2021 04:17:38,746 DEBUG: Total peptides inserted: 2
12 May 2021 04:17:38,748 INFO : 81% Done
12 May 2021 04:17:38,751 INFO : Inserting sp|P02751|FINC_HUMAN
12 May 2021 04:17:38,754 INFO : 82% Done
12 May 2021 04:17:38,767 DEBUG: Total peptides inserted: 2
12 May 2021 04:17:38,769 INFO : 83% Done
12 May 2021 04:17:38,771 INFO : Inserting sp|P02765|FETUA_HUMAN
12 May 2021 04:17:38,787 INFO : 84% Done
12 May 2021 04:17:38,801 INFO : 85% Done
12 May 2021 04:17:38,808 DEBUG: Total peptides inserted: 4
12 May 2021 04:17:38,811 INFO : Inserting sp|P02766|TTHY_HUMAN
12 May 2021 04:17:38,821 INFO : 86% Done
12 May 2021 04:17:38,842 INFO : 87% Done
12 May 2021 04:17:38,849 DEBUG: Total peptides inserted: 4
12 May 2021 04:17:38,851 INFO : Inserting sp|P02774|VTDB_HUMAN
12 May 2021 04:17:38,853 INFO : 88% Done
12 May 2021 04:17:38,868 INFO : 89% Done
12 May 2021 04:17:38,874 DEBUG: Total peptides inserted: 3
12 May 2021 04:17:38,877 INFO : Inserting sp|P04004|VTNC_HUMAN
12 May 2021 04:17:38,883 DEBUG: Total peptides inserted: 1
12 May 2021 04:17:38,885 INFO : 90% Done
12 May 2021 04:17:38,887 INFO : Inserting sp|P05090|APOD_HUMAN
12 May 2021 04:17:38,896 INFO : 91% Done
12 May 2021 04:17:38,916 INFO : 92% Done
12 May 2021 04:17:38,926 DEBUG: Total peptides inserted: 4
12 May 2021 04:17:38,933 INFO : Inserting sp|P06727|APOA4_HUMAN
12 May 2021 04:17:38,945 INFO : 93% Done
12 May 2021 04:17:38,966 INFO : 94% Done
12 May 2021 04:17:38,985 INFO : 95% Done
12 May 2021 04:17:38,993 DEBUG: Total peptides inserted: 6
12 May 2021 04:17:38,997 INFO : Inserting sp|P16070|CD44_HUMAN
12 May 2021 04:17:39,006 DEBUG: Total peptides inserted: 1
12 May 2021 04:17:39,009 INFO : 96% Done
12 May 2021 04:17:39,013 INFO : Inserting sp|Q92954|PRG4_HUMAN
12 May 2021 04:17:39,021 DEBUG: Total peptides inserted: 1
12 May 2021 04:17:39,024 INFO : 97% Done
12 May 2021 04:17:39,027 INFO : Inserting sp|Q9NZP8|C1RL_HUMAN
12 May 2021 04:17:39,038 INFO : 98% Done
12 May 2021 04:17:39,046 DEBUG: Total peptides inserted: 2
12 May 2021 04:17:39,049 INFO : Inserting sp|Q9UK55|ZPI_HUMAN
12 May 2021 04:17:39,056 DEBUG: Total peptides inserted: 1
12 May 2021 04:17:39,058 INFO : Done parsing Skyline document.
12 May 2021 04:17:39,610 INFO : Creating and populating temp tables for Proportion values
12 May 2021 04:17:39,618 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
12 May 2021 04:17:39,619 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
12 May 2021 04:17:39,620 INFO : Cleaning up temp tables
12 May 2021 04:17:39,621 INFO : Completed import of Skyline document from 210512_Lysarginase_P100_upload_2021-05-12_13-17-23.sky.zip
12 May 2021 04:17:39,624 INFO : 100% Done
12 May 2021 04:17:39,696 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.TargetedMSImportTask'