26 Feb 2025 11:39:22,772 DEBUG: Resetting Job ID: 1f0a8786-d6a7-103d-beb7-1cc91aa94700

26 Feb 2025 11:39:22,788 INFO : Starting to run task 'org.labkey.targetedms.pipeline.TargetedMSImportTask' at location 'webserver-high-priority'

26 Feb 2025 11:39:22,789 INFO : Starting to import Skyline document from Aducanumab_res_inj_2025-02-26_14-39-15.sky.zip

26 Feb 2025 11:39:22,789 INFO : Expanding Aducanumab_chimeric.protdb

26 Feb 2025 11:39:22,790 INFO : Expanding Aducanumab_res_inj.skyd

26 Feb 2025 11:39:22,829 INFO : Expanding Aducanumab_res_inj.sky.view

26 Feb 2025 11:39:22,829 INFO : Expanding Aducanumab_res_inj.sky

26 Feb 2025 11:39:22,833 INFO : Expanding Aducanumab_res_inj.skyl

26 Feb 2025 11:39:22,834 INFO : Reading Skyline file, Aducanumab_res_inj.sky, to determine if the TransitionChromInfos in the document should be stored...

26 Feb 2025 11:39:22,842 INFO : TransitionChromInfo counts or precursor counts are within the allowed limits. TransitionChromInfos will be stored

26 Feb 2025 11:39:22,844 INFO : 1% Done

26 Feb 2025 11:39:22,844 DEBUG: Starting to load chromatogram headers

26 Feb 2025 11:39:22,845 DEBUG: Done loading chromatogram headers

26 Feb 2025 11:39:22,857 WARN : Unable to resolve D:\Aducanumab project\AGC\Adu_AGC100-1.raw to SampleFile, will not import its sample-scoped chromatogram

26 Feb 2025 11:39:22,857 WARN : Unable to resolve D:\Aducanumab project\AGC\Adu_AGC100-2.raw to SampleFile, will not import its sample-scoped chromatogram

26 Feb 2025 11:39:22,857 WARN : Unable to resolve D:\Aducanumab project\AGC\Adu_AGC100-3.raw to SampleFile, will not import its sample-scoped chromatogram

26 Feb 2025 11:39:22,857 WARN : Unable to resolve D:\Aducanumab project\AGC\Adu_AGC100-4.raw to SampleFile, will not import its sample-scoped chromatogram

26 Feb 2025 11:39:22,857 WARN : Unable to resolve D:\Aducanumab project\AGC\Adu_AGC200-1.raw to SampleFile, will not import its sample-scoped chromatogram

26 Feb 2025 11:39:22,857 WARN : Unable to resolve D:\Aducanumab project\AGC\Adu_AGC200-2.raw to SampleFile, will not import its sample-scoped chromatogram

26 Feb 2025 11:39:22,857 WARN : Unable to resolve D:\Aducanumab project\AGC\Adu_AGC200-3.raw to SampleFile, will not import its sample-scoped chromatogram

26 Feb 2025 11:39:22,857 WARN : Unable to resolve D:\Aducanumab project\AGC\Adu_AGC200-4.raw to SampleFile, will not import its sample-scoped chromatogram

26 Feb 2025 11:39:22,857 WARN : Unable to resolve D:\Aducanumab project\AGC\Adu_AGC50-1.raw to SampleFile, will not import its sample-scoped chromatogram

26 Feb 2025 11:39:22,857 WARN : Unable to resolve D:\Aducanumab project\AGC\Adu_AGC50-2.raw to SampleFile, will not import its sample-scoped chromatogram

26 Feb 2025 11:39:22,857 WARN : Unable to resolve D:\Aducanumab project\AGC\Adu_AGC50-3.raw to SampleFile, will not import its sample-scoped chromatogram

26 Feb 2025 11:39:22,857 WARN : Unable to resolve D:\Aducanumab project\AGC\Adu_AGC50-4.raw to SampleFile, will not import its sample-scoped chromatogram

26 Feb 2025 11:39:22,857 WARN : Unable to resolve D:\Aducanumab project\AGC\Adu_AGC75-1.raw to SampleFile, will not import its sample-scoped chromatogram

26 Feb 2025 11:39:22,857 WARN : Unable to resolve D:\Aducanumab project\AGC\Adu_AGC75-2.raw to SampleFile, will not import its sample-scoped chromatogram

26 Feb 2025 11:39:22,857 WARN : Unable to resolve D:\Aducanumab project\AGC\Adu_AGC75-3.raw to SampleFile, will not import its sample-scoped chromatogram

26 Feb 2025 11:39:22,857 WARN : Unable to resolve D:\Aducanumab project\AGC\Adu_AGC75-4.raw to SampleFile, will not import its sample-scoped chromatogram

26 Feb 2025 11:39:22,967 INFO : Inserting sp|P0001|Aducanumab

26 Feb 2025 11:39:23,104 INFO : 16% Done

26 Feb 2025 11:39:23,309 INFO : 29% Done

26 Feb 2025 11:39:23,386 DEBUG: Total peptides inserted: 2

26 Feb 2025 11:39:23,386 INFO : Inserting sp|P0000|Aducanumab

26 Feb 2025 11:39:23,716 INFO : 52% Done

26 Feb 2025 11:39:23,896 INFO : 62% Done

26 Feb 2025 11:39:23,948 DEBUG: Total peptides inserted: 2

26 Feb 2025 11:39:23,949 INFO : Inserting sp|P0000|Aducanumab

26 Feb 2025 11:39:24,271 INFO : 84% Done

26 Feb 2025 11:39:24,393 DEBUG: Total peptides inserted: 1

26 Feb 2025 11:39:24,393 INFO : Inserting sp|P0001|Aducanumab

26 Feb 2025 11:39:24,530 INFO : 98% Done

26 Feb 2025 11:39:24,612 DEBUG: Total peptides inserted: 1

26 Feb 2025 11:39:24,612 INFO : Done parsing Skyline document.

26 Feb 2025 11:39:24,686 WARN : Missed importing 1 chromatograms from sample file D:\Aducanumab project\AGC\Adu_AGC75-1.raw

26 Feb 2025 11:39:24,686 WARN : Missed importing 1 chromatograms from sample file D:\Aducanumab project\AGC\Adu_AGC50-1.raw

26 Feb 2025 11:39:24,686 WARN : Missed importing 1 chromatograms from sample file D:\Aducanumab project\AGC\Adu_AGC200-2.raw

26 Feb 2025 11:39:24,686 WARN : Missed importing 1 chromatograms from sample file D:\Aducanumab project\AGC\Adu_AGC75-4.raw

26 Feb 2025 11:39:24,686 WARN : Missed importing 1 chromatograms from sample file D:\Aducanumab project\AGC\Adu_AGC50-2.raw

26 Feb 2025 11:39:24,686 WARN : Missed importing 1 chromatograms from sample file D:\Aducanumab project\AGC\Adu_AGC50-4.raw

26 Feb 2025 11:39:24,686 WARN : Missed importing 1 chromatograms from sample file D:\Aducanumab project\AGC\Adu_AGC100-3.raw

26 Feb 2025 11:39:24,686 WARN : Missed importing 1 chromatograms from sample file D:\Aducanumab project\AGC\Adu_AGC200-1.raw

26 Feb 2025 11:39:24,686 WARN : Missed importing 1 chromatograms from sample file D:\Aducanumab project\AGC\Adu_AGC100-1.raw

26 Feb 2025 11:39:24,686 WARN : Missed importing 1 chromatograms from sample file D:\Aducanumab project\AGC\Adu_AGC75-3.raw

26 Feb 2025 11:39:24,686 WARN : Missed importing 1 chromatograms from sample file D:\Aducanumab project\AGC\Adu_AGC200-3.raw

26 Feb 2025 11:39:24,686 WARN : Missed importing 1 chromatograms from sample file D:\Aducanumab project\AGC\Adu_AGC200-4.raw

26 Feb 2025 11:39:24,686 WARN : Missed importing 1 chromatograms from sample file D:\Aducanumab project\AGC\Adu_AGC75-2.raw

26 Feb 2025 11:39:24,686 WARN : Missed importing 1 chromatograms from sample file D:\Aducanumab project\AGC\Adu_AGC100-2.raw

26 Feb 2025 11:39:24,686 WARN : Missed importing 1 chromatograms from sample file D:\Aducanumab project\AGC\Adu_AGC50-3.raw

26 Feb 2025 11:39:24,686 WARN : Missed importing 1 chromatograms from sample file D:\Aducanumab project\AGC\Adu_AGC100-4.raw

26 Feb 2025 11:39:24,686 INFO : Creating and populating temp tables for Proportion values

26 Feb 2025 11:39:24,690 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

26 Feb 2025 11:39:24,693 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

26 Feb 2025 11:39:24,695 INFO : Cleaning up temp tables

26 Feb 2025 11:39:24,933 INFO : Completed import of Skyline document from Aducanumab_res_inj_2025-02-26_14-39-15.sky.zip

26 Feb 2025 11:39:24,935 INFO : 100% Done

26 Feb 2025 11:39:25,125 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.TargetedMSImportTask'