26 Feb 2025 11:37:50,386 DEBUG: Resetting Job ID: 0c414e62-d6a7-103d-beb7-1cc91aa94700

26 Feb 2025 11:37:50,403 INFO : Starting to run task 'org.labkey.targetedms.pipeline.TargetedMSImportTask' at location 'webserver-high-priority'

26 Feb 2025 11:37:50,404 INFO : Starting to import Skyline document from Aducanumab_nce_2025-02-26_14-37-42.sky.zip

26 Feb 2025 11:37:50,404 INFO : Expanding Aducanumab_chimeric.protdb

26 Feb 2025 11:37:50,405 INFO : Expanding Aducanumab_nce.skyd

26 Feb 2025 11:37:50,426 INFO : Expanding Aducanumab_nce.sky.view

26 Feb 2025 11:37:50,427 INFO : Expanding Aducanumab_nce.sky

26 Feb 2025 11:37:50,430 INFO : Expanding Aducanumab_nce.skyl

26 Feb 2025 11:37:50,431 INFO : Reading Skyline file, Aducanumab_nce.sky, to determine if the TransitionChromInfos in the document should be stored...

26 Feb 2025 11:37:50,438 INFO : TransitionChromInfo counts or precursor counts are within the allowed limits. TransitionChromInfos will be stored

26 Feb 2025 11:37:50,439 INFO : 1% Done

26 Feb 2025 11:37:50,440 DEBUG: Starting to load chromatogram headers

26 Feb 2025 11:37:50,440 DEBUG: Done loading chromatogram headers

26 Feb 2025 11:37:50,450 WARN : Unable to resolve D:\Aducanumab project\Std curve\Adu_StdCurve_NoBackground_100Fmol-1.raw to SampleFile, will not import its sample-scoped chromatogram

26 Feb 2025 11:37:50,450 WARN : Unable to resolve D:\Aducanumab project\Std curve\Adu_StdCurve_NoBackground_100Fmol-4.raw to SampleFile, will not import its sample-scoped chromatogram

26 Feb 2025 11:37:50,450 WARN : Unable to resolve D:\Aducanumab project\Std curve\Adu_StdCurve_NoBackground_100Fmol-2.raw to SampleFile, will not import its sample-scoped chromatogram

26 Feb 2025 11:37:50,450 WARN : Unable to resolve D:\Aducanumab project\Std curve\Adu_StdCurve_NoBackground_100Fmol-3.raw to SampleFile, will not import its sample-scoped chromatogram

26 Feb 2025 11:37:50,450 WARN : Unable to resolve D:\Aducanumab project\Std curve\Adu_StdCurve_NoBackground_500Fmol-1.raw to SampleFile, will not import its sample-scoped chromatogram

26 Feb 2025 11:37:50,450 WARN : Unable to resolve D:\Aducanumab project\Std curve\Adu_StdCurve_NoBackground_500Fmol-4.raw to SampleFile, will not import its sample-scoped chromatogram

26 Feb 2025 11:37:50,450 WARN : Unable to resolve D:\Aducanumab project\Std curve\Adu_StdCurve_NoBackground_500Fmol-3.raw to SampleFile, will not import its sample-scoped chromatogram

26 Feb 2025 11:37:50,450 WARN : Unable to resolve D:\Aducanumab project\Std curve\Adu_StdCurve_NoBackground_500Fmol-2.raw to SampleFile, will not import its sample-scoped chromatogram

26 Feb 2025 11:37:50,585 INFO : Inserting sp|P0001|Aducanumab

26 Feb 2025 11:37:50,689 INFO : 16% Done

26 Feb 2025 11:37:50,853 INFO : 29% Done

26 Feb 2025 11:37:50,919 DEBUG: Total peptides inserted: 2

26 Feb 2025 11:37:50,919 INFO : Inserting sp|P0000|Aducanumab

26 Feb 2025 11:37:51,170 INFO : 52% Done

26 Feb 2025 11:37:51,317 INFO : 62% Done

26 Feb 2025 11:37:51,361 DEBUG: Total peptides inserted: 2

26 Feb 2025 11:37:51,361 INFO : Inserting sp|P0000|Aducanumab

26 Feb 2025 11:37:51,605 INFO : 83% Done

26 Feb 2025 11:37:51,713 DEBUG: Total peptides inserted: 1

26 Feb 2025 11:37:51,713 INFO : Inserting sp|P0001|Aducanumab

26 Feb 2025 11:37:51,817 INFO : 98% Done

26 Feb 2025 11:37:51,891 DEBUG: Total peptides inserted: 1

26 Feb 2025 11:37:51,891 INFO : Done parsing Skyline document.

26 Feb 2025 11:37:51,980 WARN : Missed importing 1 chromatograms from sample file D:\Aducanumab project\Std curve\Adu_StdCurve_NoBackground_500Fmol-4.raw

26 Feb 2025 11:37:51,980 WARN : Missed importing 1 chromatograms from sample file D:\Aducanumab project\Std curve\Adu_StdCurve_NoBackground_100Fmol-2.raw

26 Feb 2025 11:37:51,980 WARN : Missed importing 1 chromatograms from sample file D:\Aducanumab project\Std curve\Adu_StdCurve_NoBackground_100Fmol-1.raw

26 Feb 2025 11:37:51,980 WARN : Missed importing 1 chromatograms from sample file D:\Aducanumab project\Std curve\Adu_StdCurve_NoBackground_100Fmol-4.raw

26 Feb 2025 11:37:51,981 WARN : Missed importing 1 chromatograms from sample file D:\Aducanumab project\Std curve\Adu_StdCurve_NoBackground_500Fmol-1.raw

26 Feb 2025 11:37:51,981 WARN : Missed importing 1 chromatograms from sample file D:\Aducanumab project\Std curve\Adu_StdCurve_NoBackground_500Fmol-2.raw

26 Feb 2025 11:37:51,981 WARN : Missed importing 1 chromatograms from sample file D:\Aducanumab project\Std curve\Adu_StdCurve_NoBackground_500Fmol-3.raw

26 Feb 2025 11:37:51,981 WARN : Missed importing 1 chromatograms from sample file D:\Aducanumab project\Std curve\Adu_StdCurve_NoBackground_100Fmol-3.raw

26 Feb 2025 11:37:51,981 INFO : Creating and populating temp tables for Proportion values

26 Feb 2025 11:37:51,984 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

26 Feb 2025 11:37:51,987 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

26 Feb 2025 11:37:51,989 INFO : Cleaning up temp tables

26 Feb 2025 11:37:52,283 INFO : Completed import of Skyline document from Aducanumab_nce_2025-02-26_14-37-42.sky.zip

26 Feb 2025 11:37:52,285 INFO : 100% Done

26 Feb 2025 11:37:52,533 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.TargetedMSImportTask'