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Skyline document import - 2018-01-18-Iso1-MouseUrine_scan - FINAL_2019-08-22_11-28-52.sky.zip

Skyline for Small Molecules, A Unifying Software Package for Quantitative Metabolomics

Job Status

Created: 2019-08-22
Modified: 2019-08-22
Email: will.thompson@duke.edu
Status: COMPLETE
Info:
Description: Skyline document import - 2018-01-18-Iso1-MouseUrine_scan - FINAL_2019-08-22_11-28-52.sky.zip
File Path: /data/labkey/files/Duke Proteomics Core/SRM Quantitation Results/Skyline for Small Molecules, A Unifying Software Package for Quantitative Metabolomics/@files/2018-01-18-Iso1-MouseUrine_scan_-_FINAL_2019-08-22_11-28-52.sky_2019-08-22_08-29-16.log
Files: 2018-01-18-Iso1-MouseUrine_scan_-_FINAL_2019-08-22_11-28-52.sky_2019-08-22_08-29-16.log
Completed Runs: 2018-01-18-Iso1-MouseUrine_scan - FINAL_2019-08-22_11-28-52.sky.zip
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Log File


22 Aug 2019 08:29:38,759 INFO : Starting to run task 'org.labkey.targetedms.pipeline.TargetedMSImportTask' at location 'webserver-high-priority'
22 Aug 2019 08:29:38,764 INFO : Starting to import Skyline document from 2018-01-18-Iso1-MouseUrine_scan - FINAL_2019-08-22_11-28-52.sky.zip
22 Aug 2019 08:29:38,764 INFO : Expanding 2018-01-18-Iso1-MouseUrine_scan - FINAL.skyd
22 Aug 2019 08:29:38,793 INFO : Expanding 2018-01-18-Iso1-MouseUrine_scan - FINAL.sky.view
22 Aug 2019 08:29:38,794 INFO : Expanding 2018-01-18-Iso1-MouseUrine_scan - FINAL.sky
22 Aug 2019 08:29:38,799 WARN : The version of this Skyline document is 19.1. This is newer than the highest supported version 4.1
22 Aug 2019 08:29:38,936 INFO : Inserting 1-Precursor
22 Aug 2019 08:29:39,321 INFO : Total molecules inserted: 3
22 Aug 2019 08:29:39,322 INFO : Inserting 2-Nucleobase
22 Aug 2019 08:29:39,618 INFO : Total molecules inserted: 10
22 Aug 2019 08:29:39,619 INFO : Inserting 3-Nucleoside
22 Aug 2019 08:29:39,760 INFO : Total molecules inserted: 6
22 Aug 2019 08:29:39,761 INFO : Inserting 3-Nucleoside-deoxy
22 Aug 2019 08:29:39,919 INFO : Total molecules inserted: 6
22 Aug 2019 08:29:39,919 INFO : Inserting 4-Mononucleotide
22 Aug 2019 08:29:40,192 INFO : Total molecules inserted: 10
22 Aug 2019 08:29:40,192 INFO : Inserting 4-Mononucleotide-deoxy
22 Aug 2019 08:29:40,336 INFO : Total molecules inserted: 6
22 Aug 2019 08:29:40,336 INFO : Inserting 5-Dinucleotide
22 Aug 2019 08:29:40,438 WARN : Unable to find a matching chromatogram for file path D:\Dropbox\Mass Spec files\Triple Quad 5500\2018-01-18-04 - PuPy - Mouse Urine\NB2018011801-MouseUrine-PuPy-Trial1.wiff|Std 5uM|0. SKYD file may be out of sync with primary Skyline document. Transition ADP-3 - 134.0000-, ADP, -1
22 Aug 2019 08:29:40,439 WARN : Unable to find a matching chromatogram for file path D:\Dropbox\Mass Spec files\Triple Quad 5500\2018-01-18-04 - PuPy - Mouse Urine\NB2018011801-MouseUrine-PuPy-Trial1.wiff|MouseUrine 5x Rep 1|2. SKYD file may be out of sync with primary Skyline document. Transition ADP-3 - 134.0000-, ADP, -1
22 Aug 2019 08:29:40,439 WARN : Unable to find a matching chromatogram for file path D:\Dropbox\Mass Spec files\Triple Quad 5500\2018-01-18-04 - PuPy - Mouse Urine\NB2018011801-MouseUrine-PuPy-Trial1.wiff|MouseUrine 5x Rep 2|3. SKYD file may be out of sync with primary Skyline document. Transition ADP-3 - 134.0000-, ADP, -1
22 Aug 2019 08:29:40,440 WARN : Unable to find a matching chromatogram for file path D:\Dropbox\Mass Spec files\Triple Quad 5500\2018-01-18-04 - PuPy - Mouse Urine\NB2018011801-MouseUrine-PuPy-Trial1.wiff|MouseUrine 5x Rep 3|4. SKYD file may be out of sync with primary Skyline document. Transition ADP-3 - 134.0000-, ADP, -1
22 Aug 2019 08:29:40,440 WARN : Unable to find a matching chromatogram for file path D:\Dropbox\Mass Spec files\Triple Quad 5500\2018-01-18-04 - PuPy - Mouse Urine\NB2018011801-MouseUrine-PuPy-Trial1.wiff|MouseUrine 5x Rep 4|5. SKYD file may be out of sync with primary Skyline document. Transition ADP-3 - 134.0000-, ADP, -1
22 Aug 2019 08:29:40,441 WARN : Unable to find a matching chromatogram for file path D:\Dropbox\Mass Spec files\Triple Quad 5500\2018-01-18-04 - PuPy - Mouse Urine\NB2018011801-MouseUrine-PuPy-Trial1.wiff|MouseUrine 5x Rep 5|6. SKYD file may be out of sync with primary Skyline document. Transition ADP-3 - 134.0000-, ADP, -1
22 Aug 2019 08:29:40,554 INFO : Total molecules inserted: 5
22 Aug 2019 08:29:40,554 INFO : Inserting 5-Dinucleotide-deoxy
22 Aug 2019 08:29:40,638 INFO : Total molecules inserted: 4
22 Aug 2019 08:29:40,638 INFO : Inserting 6-Trinucleotide
22 Aug 2019 08:29:40,642 WARN : Unable to find a matching chromatogram for file path D:\Dropbox\Mass Spec files\Triple Quad 5500\2018-01-18-04 - PuPy - Mouse Urine\NB2018011801-MouseUrine-PuPy-Trial1.wiff|Std 5uM|0. SKYD file may be out of sync with primary Skyline document. Transition ATP-3 - 134.0000-, ATP, -1
22 Aug 2019 08:29:40,642 WARN : Unable to find a matching chromatogram for file path D:\Dropbox\Mass Spec files\Triple Quad 5500\2018-01-18-04 - PuPy - Mouse Urine\NB2018011801-MouseUrine-PuPy-Trial1.wiff|MouseUrine 5x Rep 1|2. SKYD file may be out of sync with primary Skyline document. Transition ATP-3 - 134.0000-, ATP, -1
22 Aug 2019 08:29:40,643 WARN : Unable to find a matching chromatogram for file path D:\Dropbox\Mass Spec files\Triple Quad 5500\2018-01-18-04 - PuPy - Mouse Urine\NB2018011801-MouseUrine-PuPy-Trial1.wiff|MouseUrine 5x Rep 2|3. SKYD file may be out of sync with primary Skyline document. Transition ATP-3 - 134.0000-, ATP, -1
22 Aug 2019 08:29:40,643 WARN : Unable to find a matching chromatogram for file path D:\Dropbox\Mass Spec files\Triple Quad 5500\2018-01-18-04 - PuPy - Mouse Urine\NB2018011801-MouseUrine-PuPy-Trial1.wiff|MouseUrine 5x Rep 3|4. SKYD file may be out of sync with primary Skyline document. Transition ATP-3 - 134.0000-, ATP, -1
22 Aug 2019 08:29:40,644 WARN : Unable to find a matching chromatogram for file path D:\Dropbox\Mass Spec files\Triple Quad 5500\2018-01-18-04 - PuPy - Mouse Urine\NB2018011801-MouseUrine-PuPy-Trial1.wiff|MouseUrine 5x Rep 4|5. SKYD file may be out of sync with primary Skyline document. Transition ATP-3 - 134.0000-, ATP, -1
22 Aug 2019 08:29:40,644 WARN : Unable to find a matching chromatogram for file path D:\Dropbox\Mass Spec files\Triple Quad 5500\2018-01-18-04 - PuPy - Mouse Urine\NB2018011801-MouseUrine-PuPy-Trial1.wiff|MouseUrine 5x Rep 5|6. SKYD file may be out of sync with primary Skyline document. Transition ATP-3 - 134.0000-, ATP, -1
22 Aug 2019 08:29:40,735 INFO : Total molecules inserted: 4
22 Aug 2019 08:29:40,736 INFO : Inserting 6-Trinucleotide--deoxy
22 Aug 2019 08:29:40,852 INFO : Total molecules inserted: 5
22 Aug 2019 08:29:40,853 INFO : Inserting 7-IS
22 Aug 2019 08:29:40,904 INFO : Total molecules inserted: 1
22 Aug 2019 08:29:40,909 WARN : Log file is missing. Proceeding without the log.
22 Aug 2019 08:29:43,885 INFO : Completed import of Skyline document from 2018-01-18-Iso1-MouseUrine_scan - FINAL_2019-08-22_11-28-52.sky.zip
22 Aug 2019 08:29:44,299 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.TargetedMSImportTask'