18 Mar 2021 07:27:56,669 INFO : Starting to run task 'org.labkey.targetedms.pipeline.TargetedMSImportTask' at location 'webserver-high-priority'
18 Mar 2021 07:27:56,688 INFO : Starting to import Skyline document from DDR2_repeatability1.sky.zip
18 Mar 2021 07:27:56,691 INFO : Expanding NCI56_CE_optim_Skyline_library_05312016.optdb
18 Mar 2021 07:27:56,757 INFO : Expanding Cons_all_FHCRC_Broad_Q3.blib
18 Mar 2021 07:27:56,785 INFO : Expanding DDR2_repeatability1.skyd
18 Mar 2021 07:27:57,419 INFO : Expanding DDR2_repeatability1.sky.view
18 Mar 2021 07:27:57,425 INFO : Expanding DDR2_repeatability1.sky
18 Mar 2021 07:27:57,709 INFO : 1% Done
18 Mar 2021 07:27:58,588 DEBUG: Starting to load chromatogram headers
18 Mar 2021 07:27:58,598 DEBUG: Done loading chromatogram headers
18 Mar 2021 07:27:59,121 INFO : Inserting sp|O14757|CHK1_HUMAN
18 Mar 2021 07:27:59,219 INFO : 2% Done
18 Mar 2021 07:27:59,604 DEBUG: Total peptides inserted: 1
18 Mar 2021 07:27:59,609 INFO : Inserting sp|O43561|LAT_HUMAN
18 Mar 2021 07:27:59,693 INFO : 3% Done
18 Mar 2021 07:28:00,541 DEBUG: Total peptides inserted: 1
18 Mar 2021 07:28:00,546 INFO : Inserting sp|O75417|DPOLQ_HUMAN
18 Mar 2021 07:28:00,582 INFO : 5% Done
18 Mar 2021 07:28:01,070 DEBUG: Total peptides inserted: 1
18 Mar 2021 07:28:01,075 INFO : Inserting sp|O96013|PAK4_HUMAN
18 Mar 2021 07:28:01,115 INFO : 6% Done
18 Mar 2021 07:28:02,141 INFO : 8% Done
18 Mar 2021 07:28:04,045 DEBUG: Total peptides inserted: 2
18 Mar 2021 07:28:04,053 INFO : Inserting sp|O96017|CHK2_HUMAN
18 Mar 2021 07:28:04,089 INFO : 10% Done
18 Mar 2021 07:28:05,117 INFO : 12% Done
18 Mar 2021 07:28:07,121 DEBUG: Total peptides inserted: 2
18 Mar 2021 07:28:07,129 INFO : Inserting sp|P04406|G3P_HUMAN
18 Mar 2021 07:28:07,167 INFO : 14% Done
18 Mar 2021 07:28:08,208 DEBUG: Total peptides inserted: 1
18 Mar 2021 07:28:08,217 INFO : Inserting sp|P04637|P53_HUMAN
18 Mar 2021 07:28:08,264 INFO : 16% Done
18 Mar 2021 07:28:09,993 INFO : 18% Done
18 Mar 2021 07:28:11,144 DEBUG: Total peptides inserted: 2
18 Mar 2021 07:28:11,154 INFO : Inserting sp|P06493|CDK1_HUMAN
18 Mar 2021 07:28:11,234 INFO : 19% Done
18 Mar 2021 07:28:12,657 INFO : 21% Done
18 Mar 2021 07:28:14,073 DEBUG: Total peptides inserted: 2
18 Mar 2021 07:28:14,085 INFO : Inserting sp|P07437|TBB5_HUMAN
18 Mar 2021 07:28:14,192 INFO : 22% Done
18 Mar 2021 07:28:14,995 DEBUG: Total peptides inserted: 1
18 Mar 2021 07:28:15,000 INFO : Inserting sp|P09874|PARP1_HUMAN
18 Mar 2021 07:28:15,038 INFO : 24% Done
18 Mar 2021 07:28:15,665 DEBUG: Total peptides inserted: 1
18 Mar 2021 07:28:15,670 INFO : Inserting sp|P20700|LMNB1_HUMAN
18 Mar 2021 07:28:15,721 INFO : 25% Done
18 Mar 2021 07:28:16,417 DEBUG: Total peptides inserted: 1
18 Mar 2021 07:28:16,422 INFO : Inserting sp|P30305|MPIP2_HUMAN
18 Mar 2021 07:28:16,461 INFO : 27% Done
18 Mar 2021 07:28:17,526 INFO : 29% Done
18 Mar 2021 07:28:18,699 INFO : 30% Done
18 Mar 2021 07:28:19,925 DEBUG: Total peptides inserted: 3
18 Mar 2021 07:28:19,935 INFO : Inserting sp|P30307|MPIP3_HUMAN
18 Mar 2021 07:28:20,015 INFO : 32% Done
18 Mar 2021 07:28:21,220 DEBUG: Total peptides inserted: 1
18 Mar 2021 07:28:21,231 INFO : Inserting sp|P42574|CASP3_HUMAN
18 Mar 2021 07:28:21,339 INFO : 34% Done
18 Mar 2021 07:28:22,567 DEBUG: Total peptides inserted: 1
18 Mar 2021 07:28:22,579 INFO : Inserting sp|P46013|KI67_HUMAN
18 Mar 2021 07:28:22,657 INFO : 35% Done
18 Mar 2021 07:28:23,967 INFO : 37% Done
18 Mar 2021 07:28:25,373 INFO : 38% Done
18 Mar 2021 07:28:26,579 DEBUG: Total peptides inserted: 3
18 Mar 2021 07:28:26,590 INFO : Inserting sp|P49959|MRE11_HUMAN
18 Mar 2021 07:28:26,674 INFO : 40% Done
18 Mar 2021 07:28:27,962 DEBUG: Total peptides inserted: 1
18 Mar 2021 07:28:27,972 INFO : Inserting sp|P50613|CDK7_HUMAN
18 Mar 2021 07:28:28,053 INFO : 42% Done
18 Mar 2021 07:28:29,249 DEBUG: Total peptides inserted: 1
18 Mar 2021 07:28:29,261 INFO : Inserting sp|P68133|ACTS_HUMAN
18 Mar 2021 07:28:30,360 DEBUG: Total peptides inserted: 1
18 Mar 2021 07:28:30,371 INFO : Inserting sp|Q00987|MDM2_HUMAN
18 Mar 2021 07:28:30,463 INFO : 45% Done
18 Mar 2021 07:28:31,812 DEBUG: Total peptides inserted: 1
18 Mar 2021 07:28:31,823 INFO : Inserting sp|Q02223|TNR17_HUMAN
18 Mar 2021 07:28:31,902 INFO : 46% Done
18 Mar 2021 07:28:33,263 INFO : 48% Done
18 Mar 2021 07:28:34,441 DEBUG: Total peptides inserted: 2
18 Mar 2021 07:28:34,452 INFO : Inserting sp|Q12888|TP53B_HUMAN
18 Mar 2021 07:28:34,524 INFO : 49% Done
18 Mar 2021 07:28:35,690 INFO : 51% Done
18 Mar 2021 07:28:37,065 INFO : 53% Done
18 Mar 2021 07:28:38,054 INFO : 54% Done
18 Mar 2021 07:28:38,704 DEBUG: Total peptides inserted: 4
18 Mar 2021 07:28:38,709 INFO : Inserting sp|Q14566|MCM6_HUMAN
18 Mar 2021 07:28:38,745 INFO : 56% Done
18 Mar 2021 07:28:39,984 INFO : 58% Done
18 Mar 2021 07:28:41,255 DEBUG: Total peptides inserted: 2
18 Mar 2021 07:28:41,266 INFO : Inserting sp|Q14980|NUMA1_HUMAN
18 Mar 2021 07:28:41,347 INFO : 59% Done
18 Mar 2021 07:28:42,515 DEBUG: Total peptides inserted: 1
18 Mar 2021 07:28:42,524 INFO : Inserting sp|Q53HL2|BOREA_HUMAN
18 Mar 2021 07:28:42,605 INFO : 61% Done
18 Mar 2021 07:28:43,692 DEBUG: Total peptides inserted: 1
18 Mar 2021 07:28:43,701 INFO : Inserting sp|Q6IBW4|CNDH2_HUMAN
18 Mar 2021 07:28:43,766 INFO : 62% Done
18 Mar 2021 07:28:45,015 DEBUG: Total peptides inserted: 1
18 Mar 2021 07:28:45,031 INFO : Inserting sp|Q8NG31|CASC5_HUMAN
18 Mar 2021 07:28:45,176 INFO : 64% Done
18 Mar 2021 07:28:46,549 INFO : 66% Done
18 Mar 2021 07:28:47,804 DEBUG: Total peptides inserted: 2
18 Mar 2021 07:28:47,814 INFO : Inserting sp|Q92541|RTF1_HUMAN
18 Mar 2021 07:28:47,895 INFO : 67% Done
18 Mar 2021 07:28:49,175 INFO : 69% Done
18 Mar 2021 07:28:50,473 DEBUG: Total peptides inserted: 2
18 Mar 2021 07:28:50,484 INFO : Inserting sp|Q92878|RAD50_HUMAN
18 Mar 2021 07:28:50,564 INFO : 70% Done
18 Mar 2021 07:28:52,066 DEBUG: Total peptides inserted: 1
18 Mar 2021 07:28:52,079 INFO : Inserting sp|Q96ER3|SAAL1_HUMAN
18 Mar 2021 07:28:52,157 INFO : 72% Done
18 Mar 2021 07:28:53,770 INFO : 74% Done
18 Mar 2021 07:28:55,010 DEBUG: Total peptides inserted: 2
18 Mar 2021 07:28:55,020 INFO : Inserting sp|Q99638|RAD9A_HUMAN
18 Mar 2021 07:28:55,090 INFO : 75% Done
18 Mar 2021 07:28:56,195 INFO : 77% Done
18 Mar 2021 07:28:57,380 DEBUG: Total peptides inserted: 2
18 Mar 2021 07:28:57,390 INFO : Inserting sp|Q9BVJ6|UT14A_HUMAN
18 Mar 2021 07:28:57,480 INFO : 78% Done
18 Mar 2021 07:28:58,889 INFO : 80% Done
18 Mar 2021 07:29:00,184 DEBUG: Total peptides inserted: 2
18 Mar 2021 07:29:00,187 INFO : Done parsing Skyline document.
18 Mar 2021 07:29:00,208 INFO : No group comparisons found.
18 Mar 2021 07:29:00,209 INFO : Calculating calibration curves
18 Mar 2021 07:29:00,214 DEBUG: Calculating calibration curve for sp|Q9BVJ6|UT14A_HUMAN, 1 of 31
18 Mar 2021 07:29:00,566 INFO : 81% Done
18 Mar 2021 07:29:00,567 DEBUG: Calculating calibration curve for sp|Q99638|RAD9A_HUMAN, 2 of 31
18 Mar 2021 07:29:00,894 DEBUG: Calculating calibration curve for sp|Q96ER3|SAAL1_HUMAN, 3 of 31
18 Mar 2021 07:29:01,050 INFO : 82% Done
18 Mar 2021 07:29:01,051 DEBUG: Calculating calibration curve for sp|Q92878|RAD50_HUMAN, 4 of 31
18 Mar 2021 07:29:01,134 DEBUG: Calculating calibration curve for sp|Q92541|RTF1_HUMAN, 5 of 31
18 Mar 2021 07:29:01,305 INFO : 83% Done
18 Mar 2021 07:29:01,306 DEBUG: Calculating calibration curve for sp|Q8NG31|CASC5_HUMAN, 6 of 31
18 Mar 2021 07:29:01,581 DEBUG: Calculating calibration curve for sp|Q6IBW4|CNDH2_HUMAN, 7 of 31
18 Mar 2021 07:29:01,772 INFO : 84% Done
18 Mar 2021 07:29:01,773 DEBUG: Calculating calibration curve for sp|Q53HL2|BOREA_HUMAN, 8 of 31
18 Mar 2021 07:29:01,917 INFO : 85% Done
18 Mar 2021 07:29:01,917 DEBUG: Calculating calibration curve for sp|Q14980|NUMA1_HUMAN, 9 of 31
18 Mar 2021 07:29:01,996 DEBUG: Calculating calibration curve for sp|Q14566|MCM6_HUMAN, 10 of 31
18 Mar 2021 07:29:02,152 INFO : 86% Done
18 Mar 2021 07:29:02,153 DEBUG: Calculating calibration curve for sp|Q12888|TP53B_HUMAN, 11 of 31
18 Mar 2021 07:29:02,565 DEBUG: Calculating calibration curve for sp|Q02223|TNR17_HUMAN, 12 of 31
18 Mar 2021 07:29:02,909 INFO : 87% Done
18 Mar 2021 07:29:02,910 DEBUG: Calculating calibration curve for sp|Q00987|MDM2_HUMAN, 13 of 31
18 Mar 2021 07:29:03,101 INFO : 88% Done
18 Mar 2021 07:29:03,102 DEBUG: Calculating calibration curve for sp|P68133|ACTS_HUMAN, 14 of 31
18 Mar 2021 07:29:03,229 DEBUG: Calculating calibration curve for sp|P50613|CDK7_HUMAN, 15 of 31
18 Mar 2021 07:29:03,398 INFO : 89% Done
18 Mar 2021 07:29:03,399 DEBUG: Calculating calibration curve for sp|P49959|MRE11_HUMAN, 16 of 31
18 Mar 2021 07:29:03,554 DEBUG: Calculating calibration curve for sp|P46013|KI67_HUMAN, 17 of 31
18 Mar 2021 07:29:04,046 INFO : 90% Done
18 Mar 2021 07:29:04,047 DEBUG: Calculating calibration curve for sp|P42574|CASP3_HUMAN, 18 of 31
18 Mar 2021 07:29:04,190 DEBUG: Calculating calibration curve for sp|P30307|MPIP3_HUMAN, 19 of 31
18 Mar 2021 07:29:04,340 INFO : 91% Done
18 Mar 2021 07:29:04,341 DEBUG: Calculating calibration curve for sp|P30305|MPIP2_HUMAN, 20 of 31
18 Mar 2021 07:29:04,787 INFO : 92% Done
18 Mar 2021 07:29:04,788 DEBUG: Calculating calibration curve for sp|P20700|LMNB1_HUMAN, 21 of 31
18 Mar 2021 07:29:04,925 DEBUG: Calculating calibration curve for sp|P09874|PARP1_HUMAN, 22 of 31
18 Mar 2021 07:29:05,099 INFO : 93% Done
18 Mar 2021 07:29:05,100 DEBUG: Calculating calibration curve for sp|P07437|TBB5_HUMAN, 23 of 31
18 Mar 2021 07:29:05,229 DEBUG: Calculating calibration curve for sp|P06493|CDK1_HUMAN, 24 of 31
18 Mar 2021 07:29:05,566 INFO : 94% Done
18 Mar 2021 07:29:05,567 DEBUG: Calculating calibration curve for sp|P04637|P53_HUMAN, 25 of 31
18 Mar 2021 07:29:05,941 INFO : 95% Done
18 Mar 2021 07:29:05,942 DEBUG: Calculating calibration curve for sp|P04406|G3P_HUMAN, 26 of 31
18 Mar 2021 07:29:06,107 DEBUG: Calculating calibration curve for sp|O96017|CHK2_HUMAN, 27 of 31
18 Mar 2021 07:29:06,593 INFO : 96% Done
18 Mar 2021 07:29:06,594 DEBUG: Calculating calibration curve for sp|O96013|PAK4_HUMAN, 28 of 31
18 Mar 2021 07:29:06,953 DEBUG: Calculating calibration curve for sp|O75417|DPOLQ_HUMAN, 29 of 31
18 Mar 2021 07:29:07,038 INFO : 97% Done
18 Mar 2021 07:29:07,039 DEBUG: Calculating calibration curve for sp|O43561|LAT_HUMAN, 30 of 31
18 Mar 2021 07:29:07,141 DEBUG: Calculating calibration curve for sp|O14757|CHK1_HUMAN, 31 of 31
18 Mar 2021 07:29:07,196 INFO : 98% Done
18 Mar 2021 07:29:07,218 INFO : Done calculating calibration curves.
18 Mar 2021 07:29:07,220 INFO : Creating and populating temp tables for Proportion values
18 Mar 2021 07:29:07,315 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
18 Mar 2021 07:29:08,999 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
18 Mar 2021 07:29:09,226 INFO : Cleaning up temp tables
18 Mar 2021 07:29:09,630 INFO : Completed import of Skyline document from DDR2_repeatability1.sky.zip
18 Mar 2021 07:29:09,636 INFO : 100% Done
18 Mar 2021 07:29:09,692 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.TargetedMSImportTask'