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sp|O14757|CHK1_HUMAN
VTSGGVSE
S
PSGFSK
277
292
1504.6447
0
18.6622
DDR2_chromatogram2.sky.zip
sp|O43561|LAT_HUMAN
EYVNV
S
QELHPGAAK
218
233
1720.7822
0
19.0346
DDR2_chromatogram1.sky.zip
sp|O75417|DPOLQ_HUMAN
NTELNEEQEVISNLETK
1671
1688
1988.9538
0
22.2813
DDR2_chromatogram1.sky.zip
sp|O96013|PAK4_HUMAN
RPLSGPDVGTPQPAGLASGAK
177
198
1975.0487
0
17.3651
DDR2_chromatogram4.sky.zip
sp|O96013|PAK4_HUMAN
RPL
S
GPDVGTPQPAGLASGAK
177
198
2055.0150
0
18.9926
DDR2_chromatogram1.sky.zip
sp|O96017|CHK2_HUMAN
ILGET
S
L
M
R
373
382
1114.5094
0
18.5402
DDR2_chromatogram1.sky.zip
sp|O96017|CHK2_HUMAN
TL
C
GTPTYLAPEVLVSVGTAGYNR
382
406
2538.2788
0
27.4816
DDR2_chromatogram2.sky.zip
sp|O96017|CHK2_HUMAN
TL
C
G
T
PTYLAPEVLVSVGTAGYNR
382
406
2618.2452
0
26.1515
DDR2_chromatogram8_2021-06-21_13-22-59.sky.zip
sp|P04406|G3P_HUMAN
GALQNIIPASTGAAK
200
215
1410.7831
0
20.4342
DDR2_chromatogram1.sky.zip
sp|P04637|P53_HUMAN
ALPNNTSS
S
PQPK
306
319
1419.6395
0
14.9108
DDR2_chromatogram1.sky.zip
sp|P04637|P53_HUMAN
MEEPQSDPSVEPPL
S
QETFSDLWK
0
24
2855.2249
0
25.4742
DDR2_chromatogram1.sky.zip
sp|P06493|CDK1_HUMAN
VYTHEVVTLWYR
158
170
1564.8038
0
21.3152
DDR2_chromatogram1.sky.zip
sp|P06493|CDK1_HUMAN
VY
T
HEVVTLWYR
158
170
1644.7701
0
23.1874
DDR2_chromatogram1.sky.zip
sp|P07437|TBB5_HUMAN
ISVYYNEATGGK
46
58
1300.6299
0
17.6994
DDR2_chromatogram1.sky.zip
sp|P09874|PARP1_HUMAN
MAIMVQ
S
PMFDGK
34
47
1533.6431
0
22.6026
DDR2_chromatogram8_2021-06-21_13-22-59.sky.zip
sp|P20700|LMNB1_HUMAN
AGGPT
T
PL
S
PTR
14
26
1313.5418
0
16.9026
DDR2_chromatogram1.sky.zip
sp|P20700|LMNB1_HUMAN
AGGPT
T
PLSPTR
14
26
1233.5755
0
16.2985
DDR2_chromatogram8_2021-06-21_13-22-59.sky.zip
sp|P20700|LMNB1_HUMAN
AGGPTTPL
S
PTR
14
26
1233.5755
0
16.9240
DDR2_chromatogram8_2021-06-21_13-22-59.sky.zip
sp|P30305|MPIP2_HUMAN
LLGH
S
PVLR
155
164
1070.5638
0
18.3435
DDR2_chromatogram1.sky.zip
sp|P30305|MPIP2_HUMAN
SPSMP
C
SVIRPILK
320
334
1583.8528
0
20.6603
DDR2_chromatogram1.sky.zip
sp|P30305|MPIP2_HUMAN
SP
S
MP
C
SVIRPILK
320
334
1663.8191
0
21.8113
DDR2_chromatogram1.sky.zip
sp|P30307|MPIP3_HUMAN
SPSMPENLNRPR
213
225
1396.6881
0
15.9152
Did not select the y10++ and b11++ transitions, b/c even though they have different light m/z values, they have the same heavy m/z values. Ditto for y10+++ and b11+++.
DDR2_chromatogram5.sky.zip
sp|P42574|CASP3_HUMAN
IIHGSE
S
MDSGISLDNSYK
19
38
2131.9133
0
19.5797
DDR2_chromatogram1.sky.zip
sp|P46013|KI67_HUMAN
DINTFLGTPVQK
1793
1805
1331.7085
0
23.6581
DDR2_chromatogram2.sky.zip
sp|P46013|KI67_HUMAN
DINTFLG
T
PVQK
1793
1805
1411.6748
0
21.8263
DDR2_chromatogram1.sky.zip
sp|P46013|KI67_HUMAN
NINTFVE
T
PVQK
2398
2410
1468.6963
0
19.6888
DDR2_chromatogram1.sky.zip
sp|P49959|MRE11_HUMAN
IMSQSQVSK
673
682
1006.5117
0
14.0230
DDR2_chromatogram1.sky.zip
sp|P50613|CDK7_HUMAN
AY
T
HQVVTR
167
176
1153.5281
0
16.5051
DDR2_chromatogram2.sky.zip
sp|P68133|ACTS_HUMAN
AVFPSIVGRPR
30
41
1197.6982
0
19.5409
DDR2_chromatogram1.sky.zip
sp|Q00987|MDM2_HUMAN
AI
S
ETEENSDELSGER
163
179
1844.7313
0
17.0903
DDR2_chromatogram1.sky.zip
sp|Q02223|TNR17_HUMAN
SLPAALSATEIEK
166
179
1328.7187
0
20.4524
DDR2_chromatogram1.sky.zip
sp|Q02223|TNR17_HUMAN
SLPAAL
S
ATEIEK
166
179
1408.6851
0
21.3343
DDR2_chromatogram1.sky.zip
sp|Q12888|TP53B_HUMAN
IDEDGENTQIEDTEPMSPVLNSK
535
558
2560.1487
0
20.3582
DDR2_chromatogram1.sky.zip
sp|Q12888|TP53B_HUMAN
IDEDGEN
T
QIEDTEPMSPVLNSK
535
558
2640.1150
0
21.1472
DDR2_chromatogram1.sky.zip
sp|Q12888|TP53B_HUMAN
IDEDGENTQIEDTEPM
S
PVLNSK
535
558
2640.1150
0
20.6208
DDR2_chromatogram1.sky.zip
sp|Q12888|TP53B_HUMAN
IDEDGEN
T
QIEDTEPM
S
PVLNSK
535
558
2720.0813
0
21.3123
Cannot select y4+ and y12+++ b/c they have almost the same heavy m/z values, but different light m/z values. Ditto for y9-98++ and b13-98+++, and for b10+ and b21-98++. For y9++ and b5+, the heavy m/z values seemed different enough (~0.5 m/z) so that their peaks were quite different, so I'll keep those (also b/c y9++ is ranked #1).
DDR2_chromatogram8_2021-06-21_13-22-59.sky.zip
sp|Q14566|MCM6_HUMAN
EIESEIDSEEELINK
754
769
1775.8313
0
22.6185
DDR2_chromatogram2.sky.zip
sp|Q14566|MCM6_HUMAN
EIESEID
S
EEELINK
754
769
1855.7976
0
22.7899
DDR2_chromatogram2.sky.zip
sp|Q14980|NUMA1_HUMAN
LSQLEEHL
S
QLQDNPPQEK
386
405
2312.0686
0
19.9438
DDR2_chromatogram1.sky.zip
sp|Q53HL2|BOREA_HUMAN
LTAEAIQ
T
PLK
98
109
1263.6476
0
19.0092
DDR2_chromatogram1.sky.zip
sp|Q6IBW4|CNDH2_HUMAN
FVQETEL
S
QR
484
494
1315.5809
0
17.1955
DDR2_chromatogram1.sky.zip
sp|Q8NG31|CASC5_HUMAN
SL
S
NPTPDY
C
HDK
764
777
1612.6229
0
18.0068
DDR2_chromatogram2.sky.zip
sp|Q8NG31|CASC5_HUMAN
SLSNPTPDY
C
HDK
764
777
1532.6566
0
15.4376
DDR2_chromatogram1.sky.zip
sp|Q92541|RTF1_HUMAN
SASDLSEDLFK
649
660
1210.5717
0
21.0935
DDR2_chromatogram1.sky.zip
sp|Q92541|RTF1_HUMAN
SASDL
S
EDLFK
649
660
1290.5381
0
21.9620
DDR2_chromatogram1.sky.zip
sp|Q92878|RAD50_HUMAN
YELQQLEG
S
SDR
461
473
1503.6243
0
19.3307
DDR2_chromatogram1.sky.zip
sp|Q96ER3|SAAL1_HUMAN
NGAAQPLDQPQEESEEQPVFR
223
244
2368.0931
0
19.3402
DDR2_chromatogram1.sky.zip
sp|Q96ER3|SAAL1_HUMAN
NGAAQPLDQPQEE
S
EEQPVFR
223
244
2448.0595
0
20.0545
DDR2_chromatogram1.sky.zip
sp|Q99638|RAD9A_HUMAN
SPQGPSPVLAEDSEGEG
374
391
1654.7322
0
20.5404
DDR2_chromatogram2.sky.zip
sp|Q99638|RAD9A_HUMAN
SPQGPSPVLAED
S
EGEG
374
391
1734.6986
0
19.3243
DDR2_chromatogram1.sky.zip
sp|Q9BVJ6|UT14A_HUMAN
DSGSQEVLSELR
449
461
1318.6365
0
20.2791
DDR2_chromatogram1.sky.zip
sp|Q9BVJ6|UT14A_HUMAN
DSG
S
QEVLSELR
449
461
1398.6028
0
21.2869
DDR2_chromatogram1.sky.zip