24 Jan 2024 19:40:02,566 DEBUG: Resetting Job ID: 4bcc0808-9d61-103c-b9a2-fea6ddf51bb6
24 Jan 2024 19:40:02,586 INFO : Starting to run task 'org.labkey.targetedms.pipeline.TargetedMSImportTask' at location 'webserver-high-priority'
24 Jan 2024 19:40:02,587 INFO : Starting to import Skyline document from P179_UNCSet2_ACE_v0p3_2024-01-24_22-37-25.sky.zip
24 Jan 2024 19:40:02,588 INFO : Expanding ACE_1p0.irtdb
24 Jan 2024 19:40:02,589 INFO : Expanding P179_UNCSet2_ACE_v0p3.skyd
24 Jan 2024 19:40:03,238 INFO : Expanding P179_UNCSet2_ACE_v0p3.sky.view
24 Jan 2024 19:40:03,239 INFO : Expanding P179_UNCSet2_ACE_v0p3.sky
24 Jan 2024 19:40:03,264 INFO : Expanding P179_UNCSet2_ACE_v0p3.skyl
24 Jan 2024 19:40:04,076 DEBUG: Starting to load chromatogram headers
24 Jan 2024 19:40:04,113 DEBUG: Done loading chromatogram headers
24 Jan 2024 19:40:04,333 INFO : Inserting iMT
24 Jan 2024 19:40:04,336 INFO : 1% Done
24 Jan 2024 19:40:04,362 INFO : 2% Done
24 Jan 2024 19:40:04,434 INFO : 3% Done
24 Jan 2024 19:40:04,455 INFO : 4% Done
24 Jan 2024 19:40:04,487 INFO : 5% Done
24 Jan 2024 19:40:04,520 INFO : 6% Done
24 Jan 2024 19:40:04,551 DEBUG: Total molecules inserted: 19
24 Jan 2024 19:40:04,551 INFO : Inserting IS
24 Jan 2024 19:40:04,574 INFO : 7% Done
24 Jan 2024 19:40:04,607 INFO : 8% Done
24 Jan 2024 19:40:04,640 INFO : 9% Done
24 Jan 2024 19:40:04,662 INFO : 10% Done
24 Jan 2024 19:40:04,725 INFO : 11% Done
24 Jan 2024 19:40:04,757 INFO : 12% Done
24 Jan 2024 19:40:04,779 INFO : 13% Done
24 Jan 2024 19:40:04,812 INFO : 14% Done
24 Jan 2024 19:40:04,865 INFO : 15% Done
24 Jan 2024 19:40:04,899 INFO : 16% Done
24 Jan 2024 19:40:04,932 INFO : 17% Done
24 Jan 2024 19:40:04,942 DEBUG: Total molecules inserted: 36
24 Jan 2024 19:40:04,942 INFO : Inserting 1-Carbon Metabolism
24 Jan 2024 19:40:04,948 INFO : 18% Done
24 Jan 2024 19:40:04,992 INFO : 19% Done
24 Jan 2024 19:40:05,051 INFO : 20% Done
24 Jan 2024 19:40:05,066 DEBUG: Total molecules inserted: 4
24 Jan 2024 19:40:05,067 INFO : Inserting Acylcarnitine
24 Jan 2024 19:40:05,084 INFO : 21% Done
24 Jan 2024 19:40:05,114 INFO : 22% Done
24 Jan 2024 19:40:05,159 INFO : 23% Done
24 Jan 2024 19:40:05,191 INFO : 24% Done
24 Jan 2024 19:40:05,222 INFO : 25% Done
24 Jan 2024 19:40:05,254 DEBUG: Total molecules inserted: 12
24 Jan 2024 19:40:05,254 INFO : Inserting Biogenic Amine
24 Jan 2024 19:40:05,258 INFO : 26% Done
24 Jan 2024 19:40:05,316 INFO : 28% Done
24 Jan 2024 19:40:05,363 INFO : 29% Done
24 Jan 2024 19:40:05,394 INFO : 30% Done
24 Jan 2024 19:40:05,448 DEBUG: Total molecules inserted: 6
24 Jan 2024 19:40:05,448 INFO : Inserting Canonical AA
24 Jan 2024 19:40:05,465 INFO : 31% Done
24 Jan 2024 19:40:05,493 INFO : 32% Done
24 Jan 2024 19:40:05,521 INFO : 33% Done
24 Jan 2024 19:40:05,550 INFO : 34% Done
24 Jan 2024 19:40:05,581 INFO : 35% Done
24 Jan 2024 19:40:05,636 INFO : 36% Done
24 Jan 2024 19:40:05,654 INFO : 37% Done
24 Jan 2024 19:40:05,699 INFO : 38% Done
24 Jan 2024 19:40:05,745 INFO : 39% Done
24 Jan 2024 19:40:05,790 INFO : 41% Done
24 Jan 2024 19:40:05,848 INFO : 42% Done
24 Jan 2024 19:40:05,888 INFO : 43% Done
24 Jan 2024 19:40:05,907 INFO : 44% Done
24 Jan 2024 19:40:05,939 INFO : 45% Done
24 Jan 2024 19:40:05,979 INFO : 46% Done
24 Jan 2024 19:40:06,013 INFO : 48% Done
24 Jan 2024 19:40:06,077 DEBUG: Total molecules inserted: 22
24 Jan 2024 19:40:06,077 INFO : Inserting Noncanonical AA
24 Jan 2024 19:40:06,082 INFO : 49% Done
24 Jan 2024 19:40:06,128 INFO : 50% Done
24 Jan 2024 19:40:06,162 INFO : 51% Done
24 Jan 2024 19:40:06,232 INFO : 52% Done
24 Jan 2024 19:40:06,248 INFO : 53% Done
24 Jan 2024 19:40:06,281 INFO : 54% Done
24 Jan 2024 19:40:06,348 INFO : 55% Done
24 Jan 2024 19:40:06,370 INFO : 56% Done
24 Jan 2024 19:40:06,409 DEBUG: Total molecules inserted: 14
24 Jan 2024 19:40:06,409 INFO : Inserting Creatine
24 Jan 2024 19:40:06,417 INFO : 58% Done
24 Jan 2024 19:40:06,515 INFO : 59% Done
24 Jan 2024 19:40:06,531 DEBUG: Total molecules inserted: 4
24 Jan 2024 19:40:06,532 INFO : Inserting Dipeptide
24 Jan 2024 19:40:06,551 INFO : 60% Done
24 Jan 2024 19:40:06,587 INFO : 61% Done
24 Jan 2024 19:40:06,625 INFO : 62% Done
24 Jan 2024 19:40:06,674 INFO : 63% Done
24 Jan 2024 19:40:06,710 INFO : 64% Done
24 Jan 2024 19:40:06,746 INFO : 65% Done
24 Jan 2024 19:40:06,783 INFO : 66% Done
24 Jan 2024 19:40:06,853 INFO : 67% Done
24 Jan 2024 19:40:06,889 INFO : 68% Done
24 Jan 2024 19:40:06,920 DEBUG: Total molecules inserted: 22
24 Jan 2024 19:40:06,920 INFO : Inserting Neurotransmitter/Modulator
24 Jan 2024 19:40:06,924 INFO : 69% Done
24 Jan 2024 19:40:06,958 INFO : 70% Done
24 Jan 2024 19:40:06,973 DEBUG: Total molecules inserted: 3
24 Jan 2024 19:40:06,973 INFO : Inserting Other
24 Jan 2024 19:40:07,017 DEBUG: Total molecules inserted: 3
24 Jan 2024 19:40:07,017 INFO : Inserting Polyamine
24 Jan 2024 19:40:07,020 INFO : 71% Done
24 Jan 2024 19:40:07,036 INFO : 72% Done
24 Jan 2024 19:40:07,064 INFO : 73% Done
24 Jan 2024 19:40:07,088 INFO : 74% Done
24 Jan 2024 19:40:07,102 DEBUG: Total molecules inserted: 4
24 Jan 2024 19:40:07,102 INFO : Inserting Purine/Pyrimidine
24 Jan 2024 19:40:07,109 INFO : 75% Done
24 Jan 2024 19:40:07,184 INFO : 76% Done
24 Jan 2024 19:40:07,212 DEBUG: Total molecules inserted: 2
24 Jan 2024 19:40:07,212 INFO : Inserting Redox
24 Jan 2024 19:40:07,234 INFO : 77% Done
24 Jan 2024 19:40:07,261 DEBUG: Total molecules inserted: 3
24 Jan 2024 19:40:07,261 INFO : Inserting Sphingosine
24 Jan 2024 19:40:07,264 INFO : 78% Done
24 Jan 2024 19:40:07,280 DEBUG: Total molecules inserted: 1
24 Jan 2024 19:40:07,280 INFO : Inserting Tryptophan Metabolism
24 Jan 2024 19:40:07,296 DEBUG: Total molecules inserted: 1
24 Jan 2024 19:40:07,296 INFO : Inserting Vitamin
24 Jan 2024 19:40:07,327 INFO : 79% Done
24 Jan 2024 19:40:07,344 INFO : 80% Done
24 Jan 2024 19:40:07,371 DEBUG: Total molecules inserted: 4
24 Jan 2024 19:40:07,372 INFO : Done parsing Skyline document.
24 Jan 2024 19:40:07,372 INFO : Calculating iRT correlations for 26 sample(s)
24 Jan 2024 19:40:07,388 INFO : Calculated iRT regression line from full standard list.
24 Jan 2024 19:40:07,401 INFO : Calculated iRT regression line from full standard list.
24 Jan 2024 19:40:07,415 INFO : Calculated iRT regression line from full standard list.
24 Jan 2024 19:40:07,429 INFO : Calculated iRT regression line from full standard list.
24 Jan 2024 19:40:07,442 INFO : Calculated iRT regression line from full standard list.
24 Jan 2024 19:40:07,456 INFO : Calculated iRT regression line from full standard list.
24 Jan 2024 19:40:07,469 INFO : Calculated iRT regression line from full standard list.
24 Jan 2024 19:40:07,483 INFO : Calculated iRT regression line from full standard list.
24 Jan 2024 19:40:07,497 INFO : Calculated iRT regression line from full standard list.
24 Jan 2024 19:40:07,510 INFO : Calculated iRT regression line from full standard list.
24 Jan 2024 19:40:07,524 INFO : Calculated iRT regression line from full standard list.
24 Jan 2024 19:40:07,537 INFO : Calculated iRT regression line from full standard list.
24 Jan 2024 19:40:07,551 INFO : Calculated iRT regression line from full standard list.
24 Jan 2024 19:40:07,565 INFO : Calculated iRT regression line from full standard list.
24 Jan 2024 19:40:07,578 INFO : Calculated iRT regression line from full standard list.
24 Jan 2024 19:40:07,592 INFO : Calculated iRT regression line from full standard list.
24 Jan 2024 19:40:07,605 INFO : Calculated iRT regression line from full standard list.
24 Jan 2024 19:40:07,619 INFO : Calculated iRT regression line from full standard list.
24 Jan 2024 19:40:07,632 INFO : Calculated iRT regression line from full standard list.
24 Jan 2024 19:40:07,646 INFO : Calculated iRT regression line from full standard list.
24 Jan 2024 19:40:07,659 INFO : Calculated iRT regression line from full standard list.
24 Jan 2024 19:40:07,673 INFO : Calculated iRT regression line from full standard list.
24 Jan 2024 19:40:07,686 INFO : Calculated iRT regression line from full standard list.
24 Jan 2024 19:40:07,699 INFO : Calculated iRT regression line from full standard list.
24 Jan 2024 19:40:07,713 INFO : Calculated iRT regression line from full standard list.
24 Jan 2024 19:40:07,726 INFO : Calculated iRT regression line from full standard list.
24 Jan 2024 19:40:07,727 INFO : Finished calculating iRT correlations for all samples. 26 had a regression line calculated.
24 Jan 2024 19:40:07,788 INFO : No group comparisons found.
24 Jan 2024 19:40:07,788 INFO : Calculating calibration curves
24 Jan 2024 19:40:07,788 DEBUG: Calculating calibration curve for iMT, 1 of 17
24 Jan 2024 19:40:07,875 INFO : 81% Done
24 Jan 2024 19:40:07,875 DEBUG: Calculating calibration curve for IS, 2 of 17
24 Jan 2024 19:40:08,044 INFO : 82% Done
24 Jan 2024 19:40:08,044 DEBUG: Calculating calibration curve for 1-Carbon Metabolism, 3 of 17
24 Jan 2024 19:40:08,149 INFO : 83% Done
24 Jan 2024 19:40:08,149 DEBUG: Calculating calibration curve for Acylcarnitine, 4 of 17
24 Jan 2024 19:40:08,280 INFO : 84% Done
24 Jan 2024 19:40:08,281 DEBUG: Calculating calibration curve for Biogenic Amine, 5 of 17
24 Jan 2024 19:40:08,384 INFO : 85% Done
24 Jan 2024 19:40:08,384 DEBUG: Calculating calibration curve for Canonical AA, 6 of 17
24 Jan 2024 19:40:08,709 INFO : 86% Done
24 Jan 2024 19:40:08,709 DEBUG: Calculating calibration curve for Noncanonical AA, 7 of 17
24 Jan 2024 19:40:08,906 INFO : 87% Done
24 Jan 2024 19:40:08,906 DEBUG: Calculating calibration curve for Creatine, 8 of 17
24 Jan 2024 19:40:08,960 INFO : 88% Done
24 Jan 2024 19:40:08,961 DEBUG: Calculating calibration curve for Dipeptide, 9 of 17
24 Jan 2024 19:40:09,182 INFO : 90% Done
24 Jan 2024 19:40:09,182 DEBUG: Calculating calibration curve for Neurotransmitter/Modulator, 10 of 17
24 Jan 2024 19:40:09,214 INFO : 91% Done
24 Jan 2024 19:40:09,215 DEBUG: Calculating calibration curve for Other, 11 of 17
24 Jan 2024 19:40:09,246 INFO : 92% Done
24 Jan 2024 19:40:09,246 DEBUG: Calculating calibration curve for Polyamine, 12 of 17
24 Jan 2024 19:40:09,296 INFO : 93% Done
24 Jan 2024 19:40:09,296 DEBUG: Calculating calibration curve for Purine/Pyrimidine, 13 of 17
24 Jan 2024 19:40:09,334 INFO : 94% Done
24 Jan 2024 19:40:09,335 DEBUG: Calculating calibration curve for Redox, 14 of 17
24 Jan 2024 19:40:09,366 INFO : 95% Done
24 Jan 2024 19:40:09,366 DEBUG: Calculating calibration curve for Sphingosine, 15 of 17
24 Jan 2024 19:40:09,378 INFO : 96% Done
24 Jan 2024 19:40:09,378 DEBUG: Calculating calibration curve for Tryptophan Metabolism, 16 of 17
24 Jan 2024 19:40:09,390 INFO : 97% Done
24 Jan 2024 19:40:09,390 DEBUG: Calculating calibration curve for Vitamin, 17 of 17
24 Jan 2024 19:40:09,436 INFO : 98% Done
24 Jan 2024 19:40:09,795 INFO : Done calculating calibration curves.
24 Jan 2024 19:40:11,085 INFO : Creating and populating temp tables for Proportion values
24 Jan 2024 19:40:11,175 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
24 Jan 2024 19:40:11,390 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
24 Jan 2024 19:40:11,504 INFO : Cleaning up temp tables
24 Jan 2024 19:40:11,816 INFO : Completed import of Skyline document from P179_UNCSet2_ACE_v0p3_2024-01-24_22-37-25.sky.zip
24 Jan 2024 19:40:11,818 INFO : 100% Done
24 Jan 2024 19:40:11,853 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.TargetedMSImportTask'