05 Feb 2024 14:24:24,426 DEBUG: Resetting Job ID: 1281858f-a6a3-103c-a2d1-fea6ddf55050
05 Feb 2024 14:24:24,474 INFO : Starting to run task 'org.labkey.targetedms.pipeline.TargetedMSImportTask' at location 'webserver-high-priority'
05 Feb 2024 14:24:24,476 INFO : Starting to import Skyline document from ZipChip_HR_Metabolomics_2024Protocol_2024-02-05_17-24-05.sky.zip
05 Feb 2024 14:24:24,476 INFO : Expanding iMT-NSKA-PepBGE.irtdb
05 Feb 2024 14:24:24,479 INFO : Expanding ZipChip_HR_Metabolomics_2024Protocol.skyd
05 Feb 2024 14:24:24,509 INFO : Expanding ZipChip_HR_Metabolomics_2024Protocol.sky.view
05 Feb 2024 14:24:24,510 INFO : Expanding ZipChip_HR_Metabolomics_2024Protocol.sky
05 Feb 2024 14:24:24,512 INFO : Expanding ZipChip_HR_Metabolomics_2024Protocol.skyl
05 Feb 2024 14:24:24,523 INFO : 2% Done
05 Feb 2024 14:24:24,548 DEBUG: Starting to load chromatogram headers
05 Feb 2024 14:24:24,550 DEBUG: Done loading chromatogram headers
05 Feb 2024 14:24:25,991 INFO : Inserting Acylcarnitine
05 Feb 2024 14:24:25,995 INFO : 3% Done
05 Feb 2024 14:24:26,007 INFO : 5% Done
05 Feb 2024 14:24:26,012 INFO : 6% Done
05 Feb 2024 14:24:26,021 INFO : 8% Done
05 Feb 2024 14:24:26,027 INFO : 9% Done
05 Feb 2024 14:24:26,032 INFO : 10% Done
05 Feb 2024 14:24:26,047 INFO : 11% Done
05 Feb 2024 14:24:26,053 INFO : 13% Done
05 Feb 2024 14:24:26,059 INFO : 14% Done
05 Feb 2024 14:24:26,064 DEBUG: Total molecules inserted: 13
05 Feb 2024 14:24:26,064 INFO : Inserting Amino Acid
05 Feb 2024 14:24:26,066 INFO : 16% Done
05 Feb 2024 14:24:26,074 WARN : Unable to find at least one chromatogram for file path O:\908South\Data\P128\20230712_MM10151C_HR800486_P128_A1_Blank_1.raw
05 Feb 2024 14:24:26,074 WARN : Unable to find at least one chromatogram for file path O:\908South\Data\P128\20230712_MM10151C_HR800486_P128_A1_Blank_2.raw
05 Feb 2024 14:24:26,075 WARN : Unable to find at least one chromatogram for file path O:\908South\Data\P128\20230712_MM10151C_HR800486_P128_E2_1-4_1.raw
05 Feb 2024 14:24:26,075 WARN : Unable to find at least one chromatogram for file path O:\908South\Data\P128\20230712_MM10151C_HR800486_P128_E2_1-4_2.raw
05 Feb 2024 14:24:26,076 INFO : 17% Done
05 Feb 2024 14:24:26,080 INFO : 18% Done
05 Feb 2024 14:24:26,086 INFO : 19% Done
05 Feb 2024 14:24:26,095 INFO : 20% Done
05 Feb 2024 14:24:26,102 INFO : 22% Done
05 Feb 2024 14:24:26,113 INFO : 24% Done
05 Feb 2024 14:24:26,123 INFO : 25% Done
05 Feb 2024 14:24:26,128 INFO : 26% Done
05 Feb 2024 14:24:26,132 INFO : 27% Done
05 Feb 2024 14:24:26,138 INFO : 29% Done
05 Feb 2024 14:24:26,142 INFO : 30% Done
05 Feb 2024 14:24:26,151 INFO : 31% Done
05 Feb 2024 14:24:26,155 INFO : 32% Done
05 Feb 2024 14:24:26,160 INFO : 34% Done
05 Feb 2024 14:24:26,169 INFO : 35% Done
05 Feb 2024 14:24:26,174 INFO : 37% Done
05 Feb 2024 14:24:26,177 DEBUG: Total molecules inserted: 21
05 Feb 2024 14:24:26,177 INFO : Inserting Biogenic Amine
05 Feb 2024 14:24:26,179 INFO : 38% Done
05 Feb 2024 14:24:26,187 DEBUG: Total molecules inserted: 2
05 Feb 2024 14:24:26,187 INFO : Inserting Creatine
05 Feb 2024 14:24:26,193 INFO : 41% Done
05 Feb 2024 14:24:26,200 INFO : 42% Done
05 Feb 2024 14:24:26,205 DEBUG: Total molecules inserted: 3
05 Feb 2024 14:24:26,205 INFO : Inserting Neurotransmitter/Modulator
05 Feb 2024 14:24:26,207 INFO : 43% Done
05 Feb 2024 14:24:26,215 INFO : 45% Done
05 Feb 2024 14:24:26,224 DEBUG: Total molecules inserted: 3
05 Feb 2024 14:24:26,224 INFO : Inserting Redox
05 Feb 2024 14:24:26,226 INFO : 46% Done
05 Feb 2024 14:24:26,231 INFO : 47% Done
05 Feb 2024 14:24:26,237 INFO : 48% Done
05 Feb 2024 14:24:26,243 INFO : 49% Done
05 Feb 2024 14:24:26,247 DEBUG: Total molecules inserted: 4
05 Feb 2024 14:24:26,248 INFO : 50% Done
05 Feb 2024 14:24:26,248 INFO : Inserting Vitamin
05 Feb 2024 14:24:26,255 INFO : 51% Done
05 Feb 2024 14:24:26,259 DEBUG: Total molecules inserted: 2
05 Feb 2024 14:24:26,259 INFO : Inserting iMT_indexing
05 Feb 2024 14:24:26,261 INFO : 52% Done
05 Feb 2024 14:24:26,266 INFO : 53% Done
05 Feb 2024 14:24:26,271 INFO : 54% Done
05 Feb 2024 14:24:26,277 INFO : 55% Done
05 Feb 2024 14:24:26,282 INFO : 56% Done
05 Feb 2024 14:24:26,287 INFO : 58% Done
05 Feb 2024 14:24:26,300 INFO : 60% Done
05 Feb 2024 14:24:26,305 INFO : 61% Done
05 Feb 2024 14:24:26,310 INFO : 62% Done
05 Feb 2024 14:24:26,314 DEBUG: Total molecules inserted: 11
05 Feb 2024 14:24:26,315 INFO : Inserting NSKA-IS
05 Feb 2024 14:24:26,317 INFO : 63% Done
05 Feb 2024 14:24:26,321 INFO : 64% Done
05 Feb 2024 14:24:26,326 INFO : 65% Done
05 Feb 2024 14:24:26,331 INFO : 66% Done
05 Feb 2024 14:24:26,339 INFO : 67% Done
05 Feb 2024 14:24:26,344 INFO : 69% Done
05 Feb 2024 14:24:26,349 INFO : 70% Done
05 Feb 2024 14:24:26,358 INFO : 71% Done
05 Feb 2024 14:24:26,365 INFO : 73% Done
05 Feb 2024 14:24:26,369 DEBUG: Total molecules inserted: 11
05 Feb 2024 14:24:26,369 INFO : Inserting NSKB-IS
05 Feb 2024 14:24:26,375 INFO : 74% Done
05 Feb 2024 14:24:26,380 INFO : 75% Done
05 Feb 2024 14:24:26,385 INFO : 76% Done
05 Feb 2024 14:24:26,390 INFO : 78% Done
05 Feb 2024 14:24:26,399 INFO : 79% Done
05 Feb 2024 14:24:26,404 INFO : 80% Done
05 Feb 2024 14:24:26,408 DEBUG: Total molecules inserted: 8
05 Feb 2024 14:24:26,411 INFO : Done parsing Skyline document.
05 Feb 2024 14:24:26,411 INFO : Calculating iRT correlations for 4 sample(s)
05 Feb 2024 14:24:26,417 INFO : Calculated iRT regression line from full standard list.
05 Feb 2024 14:24:26,423 INFO : Calculated iRT regression line from full standard list.
05 Feb 2024 14:24:26,429 INFO : Calculated iRT regression line from full standard list.
05 Feb 2024 14:24:26,435 INFO : Calculated iRT regression line from full standard list.
05 Feb 2024 14:24:26,435 INFO : Finished calculating iRT correlations for all samples. 4 had a regression line calculated.
05 Feb 2024 14:24:26,519 INFO : No group comparisons found.
05 Feb 2024 14:24:26,519 INFO : Calculating calibration curves
05 Feb 2024 14:24:26,519 DEBUG: Calculating calibration curve for Acylcarnitine, 1 of 10
05 Feb 2024 14:24:26,650 INFO : 82% Done
05 Feb 2024 14:24:26,650 DEBUG: Calculating calibration curve for Amino Acid, 2 of 10
05 Feb 2024 14:24:26,836 INFO : 84% Done
05 Feb 2024 14:24:26,836 DEBUG: Calculating calibration curve for Biogenic Amine, 3 of 10
05 Feb 2024 14:24:26,855 INFO : 85% Done
05 Feb 2024 14:24:26,855 DEBUG: Calculating calibration curve for Creatine, 4 of 10
05 Feb 2024 14:24:26,885 INFO : 87% Done
05 Feb 2024 14:24:26,885 DEBUG: Calculating calibration curve for Neurotransmitter/Modulator, 5 of 10
05 Feb 2024 14:24:26,917 INFO : 89% Done
05 Feb 2024 14:24:26,917 DEBUG: Calculating calibration curve for Redox, 6 of 10
05 Feb 2024 14:24:26,947 INFO : 91% Done
05 Feb 2024 14:24:26,947 DEBUG: Calculating calibration curve for Vitamin, 7 of 10
05 Feb 2024 14:24:26,971 INFO : 93% Done
05 Feb 2024 14:24:26,971 DEBUG: Calculating calibration curve for iMT_indexing, 8 of 10
05 Feb 2024 14:24:27,032 INFO : 94% Done
05 Feb 2024 14:24:27,032 DEBUG: Calculating calibration curve for NSKA-IS, 9 of 10
05 Feb 2024 14:24:27,088 INFO : 96% Done
05 Feb 2024 14:24:27,089 DEBUG: Calculating calibration curve for NSKB-IS, 10 of 10
05 Feb 2024 14:24:27,131 INFO : 98% Done
05 Feb 2024 14:24:27,146 INFO : Done calculating calibration curves.
05 Feb 2024 14:24:28,301 WARN : Missed importing 6 chromatograms from sample file O:\908South\Data\P128\20230712_MM10151C_HR800486_P128_E2_1-4_1.raw
05 Feb 2024 14:24:28,301 WARN : Missed importing 6 chromatograms from sample file O:\908South\Data\P128\20230712_MM10151C_HR800486_P128_E2_1-4_2.raw
05 Feb 2024 14:24:28,301 WARN : Missed importing 6 chromatograms from sample file O:\908South\Data\P128\20230712_MM10151C_HR800486_P128_A1_Blank_2.raw
05 Feb 2024 14:24:28,302 WARN : Missed importing 6 chromatograms from sample file O:\908South\Data\P128\20230712_MM10151C_HR800486_P128_A1_Blank_1.raw
05 Feb 2024 14:24:28,302 INFO : Creating and populating temp tables for Proportion values
05 Feb 2024 14:24:28,364 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
05 Feb 2024 14:24:28,391 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
05 Feb 2024 14:24:28,411 INFO : Cleaning up temp tables
05 Feb 2024 14:24:28,421 INFO : Completed import of Skyline document from ZipChip_HR_Metabolomics_2024Protocol_2024-02-05_17-24-05.sky.zip
05 Feb 2024 14:24:28,437 INFO : 100% Done
05 Feb 2024 14:24:28,472 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.TargetedMSImportTask'